› 4kqu

X-ray diffraction
2.07Å resolution

Crystal Structure of Farnesyl Synthase Mutant (Y204A) Complexed with Mg, Alendronate and Isopentenyl Pyrophosphate

Released:
DOI: 10.2210/pdb4kqu/pdb
PDB entry 4kqu coloured by chain, front view.
PDB entry 4kqu coloured by chain, side view.
PDB entry 4kqu coloured by chain, top view.
Source organism: Homo sapiens
Entry authors: Barnett BL, Tsoumpra MK, Muniz JRC, Walter RL

Function and Biology Details

Reactions catalysed: 
Prenyl diphosphate + isopentenyl diphosphate = diphosphate + geranyl diphosphate
Geranyl diphosphate + isopentenyl diphosphate = diphosphate + (2E,6E)-farnesyl diphosphate
Biochemical function:
Biological process:
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-146902 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Farnesyl pyrophosphate synthase Chain: A
Molecule details ›
Chain: A
Length: 375 amino acids
Theoretical weight: 43.05 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: P14324 (Residues: 67-419; Coverage: 84%)
  • Best match: P14324-2 (Residues: 1-353)
Gene names: FDPS, FPS, KIAA1293
Sequence domains: Polyprenyl synthetase
Structure domains: Farnesyl Diphosphate Synthase

Ligands and Environments

3 bound ligands:
Ligand MG 3 x MG
Ligand IPE 1 x IPE
Ligand AHD 1 x AHD
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: DIAMOND BEAMLINE I02
Spacegroup: P41212
Unit cell:
a: 111.5Å b: 111.5Å c: 66.53Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.178 0.176 0.201
Expression system: Escherichia coli BL21(DE3)

Quick links