› 5ahs

X-ray diffraction
2.3Å resolution

3-Sulfinopropionyl-Coenzyme A (3SP-CoA) desulfinase from Advenella mimgardefordensis DPN7T: holo crystal structure with the substrate analog succinyl-CoA

Released:
DOI: 10.2210/pdb5ahs/pdb
PDB entry 5ahs coloured by chain, front view.
PDB entry 5ahs coloured by chain, side view.
PDB entry 5ahs coloured by chain, top view.
Source organism: Advenella mimigardefordensis DPN7
Primary publication:
3-Sulfinopropionyl-coenzyme A (3SP-CoA) desulfinase from Advenella mimigardefordensis DPN7(T): crystal structure and function of a desulfinase with an acyl-CoA dehydrogenase fold.
Schürmann M, Meijers R, Schneider TR, Steinbüchel A, Cianci M
OpenAccess logo Acta Crystallogr D Biol Crystallogr 71 1360-72 (2015)
PMID: 26057676

Function and Biology Details

Reaction catalysed: 
3-sulfinopropanoyl-CoA + H(2)O = propanoyl-CoA + sulfite
Biochemical function:
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-125535 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
3-sulfinopropanoyl-CoA desulfinase Chains: A, B, C, D, E, F
Molecule details ›
Chains: A, B, C, D, E, F
Length: 401 amino acids
Theoretical weight: 43.58 KDa
Source organism: Advenella mimigardefordensis DPN7
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: K4L7X3 (Residues: 1-401; Coverage: 100%)
Gene names: MIM_c31390, acd
Sequence domains:

Ligands and Environments


Cofactor: Ligand FAD 6 x FAD
3 bound ligands:
Ligand COA 5 x COA
Ligand SIN 1 x SIN
Ligand SO4 1 x SO4
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: PETRA III, EMBL c/o DESY BEAMLINE P13 (MX1)
Spacegroup: P21212
Unit cell:
a: 100.066Å b: 233.493Å c: 121.285Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.202 0.2 0.244
Expression system: Escherichia coli BL21(DE3)

Quick links

Citations

3 citation in other articles

An integrated pipeline for sample preparation and characterization at the EMBL@PETRA3 synchrotron facilities.
Boivin et al. (2016)
2 more

1 mention without citation

3-Sulfinopropionyl-coenzyme A (3SP-CoA) desulfinase from Advenella mimigardefordensis DPN7(T): crystal structure and function of a desulfinase with an acyl-CoA dehydrogenase fold.
Schürmann et al. (2015)