› 5fn1

Electron Microscopy
3.9Å resolution

Electron cryo-microscopy of filamentous flexible virus PepMV (Pepino Mosaic Virus)

Released:
DOI: 10.2210/pdb5fn1/pdb
PDB entry 5fn1 coloured by chain, front view.
PDB entry 5fn1 coloured by chain, side view.
PDB entry 5fn1 coloured by chain, top view.
Source organism: Pepino mosaic virus
Primary publication:
The near-atomic cryoEM structure of a flexible filamentous plant virus shows homology of its coat protein with nucleoproteins of animal viruses.
Agirrezabala X, Méndez-López E, Lasso G, Sánchez-Pina MA, Aranda M, Valle M
OpenAccess logo Elife 4 e11795 (2015)
PMID: 26673077
Related structures: EMD-3236

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
Sequence domain:

Structure analysis Details

Assembly composition:
hetero 36-mer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-180748 (preferred)
Entry contents:
1 distinct polypeptide molecule
1 distinct RNA molecule
Macromolecules (2 distinct):
Potexviruses and carlaviruses coat protein domain-containing protein Chain: A
Molecule details ›
Chain: A
Length: 237 amino acids
Theoretical weight: 25.15 KDa
Source organism: Pepino mosaic virus
UniProt:
  • Canonical: Q71FK2 (Residues: 1-237; Coverage: 100%)
Sequence domains: Viral coat protein
5'-R(*UP*UP*UP*UP*UP)-3' Chain: B
Molecule details ›
Chain: B
Length: 5 nucleotides
Theoretical weight: 1.49 KDa
Source organism: Pepino mosaic virus

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 3.9Å
Relevant EMDB volumes: EMD-3236

Quick links

Citations

4 review citations

Metagenomics reshapes the concepts of RNA virus evolution by revealing extensive horizontal virus transfer.
Dolja et al. (2018)
3 more

10 mentions without citation

Nucleocapsid Structure of Negative Strand RNA Virus.
Luo et al. (2020)
9 more