› 5r57

X-ray diffraction
1.44Å resolution

PanDDA analysis group deposition -- Crystal Structure of human NUDT22 in complex with N08253b

Released:
DOI: 10.2210/pdb5r57/pdb
PDB entry 5r57 coloured by chain, front view.
PDB entry 5r57 coloured by chain, side view.
PDB entry 5r57 coloured by chain, top view.
Source organism: Homo sapiens
Entry authors: Diaz-Saez L, Talon R, Krojer T, Burgess-Brown NA, Arrowsmith CH, Edwards AM, Bountra C, von Delft F, Huber KVM

Function and Biology Details

Reaction catalysed: 
UDP-sugar + H(2)O = UMP + alpha-D-aldose 1-phosphate
Biochemical function:
Biological process:
  • not assigned
Cellular component:
Sequence domain:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-189690 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Uridine diphosphate glucose pyrophosphatase NUDT22 Chain: A
Molecule details ›
Chain: A
Length: 304 amino acids
Theoretical weight: 32.71 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli
UniProt:
  • Canonical: Q9BRQ3 (Residues: 1-303; Coverage: 100%)
Gene names: NUDT22, PP11246

Ligands and Environments

2 bound ligands:
Ligand S0P 1 x S0P
Ligand DMS 4 x DMS
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: DIAMOND BEAMLINE I04-1
Spacegroup: P212121
Unit cell:
a: 49.56Å b: 52.35Å c: 101.6Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.189 0.187 0.219
Expression system: Escherichia coli

Quick links