› 6jet

X-ray diffraction
2.6Å resolution

Actinonin bound crystal structure of class I type a peptide deformylase from Acinetobacter baumannii

Released:
DOI: 10.2210/pdb6jet/pdb
PDB entry 6jet coloured by chain, front view.
PDB entry 6jet coloured by chain, side view.
PDB entry 6jet coloured by chain, top view.
Source organism: Acinetobacter baumannii MRSN 3527
Entry authors: Ho TH, Lee IH, Kang LW

Function and Biology Details

Reaction catalysed: 
Formyl-L-methionyl peptide + H(2)O = formate + methionyl peptide
Biochemical function:
Biological process:
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-109255 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Peptide deformylase Chains: A, B
Molecule details ›
Chains: A, B
Length: 171 amino acids
Theoretical weight: 19.51 KDa
Source organism: Acinetobacter baumannii MRSN 3527
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: B0VNL8 (Residues: 2-172; Coverage: 97%)
Gene names: ABSDF0185, def
Sequence domains: Polypeptide deformylase

Ligands and Environments

2 bound ligands:
Ligand ZN 2 x ZN
Ligand BB2 2 x BB2
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: PAL/PLS BEAMLINE 5C (4A)
Spacegroup: P21
Unit cell:
a: 43.666Å b: 112.903Å c: 43.678Å
α: 90° β: 102.85° γ: 90°
R-values:
R R work R free
0.25 0.247 0.295
Expression system: Escherichia coli BL21(DE3)

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