› 6jfs

X-ray diffraction
2.25Å resolution

K4U bound crystal structure of class II peptide deformylase from methicillin resistant Staphylococcus aureus

Released:
DOI: 10.2210/pdb6jfs/pdb
PDB entry 6jfs coloured by chain, front view.
PDB entry 6jfs coloured by chain, side view.
PDB entry 6jfs coloured by chain, top view.
Source organism: Staphylococcus aureus
Entry authors: Lee IH, Ho TH, Kang LW

Function and Biology Details

Reaction catalysed: 
Formyl-L-methionyl peptide + H(2)O = formate + methionyl peptide
Biochemical function:
Biological process:
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-159509 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Peptide deformylase Chain: A
Molecule details ›
Chain: A
Length: 183 amino acids
Theoretical weight: 20.59 KDa
Source organism: Staphylococcus aureus
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: P68826 (Residues: 1-183; Coverage: 100%)
Gene names: def, def1, pdf1
Sequence domains: Polypeptide deformylase

Ligands and Environments

2 bound ligands:
Ligand NI 1 x NI
Ligand LHY 1 x LHY
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: PAL/PLS BEAMLINE 5C (4A)
Spacegroup: C2221
Unit cell:
a: 95.76Å b: 120.396Å c: 47.208Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.212 0.209 0.268
Expression system: Escherichia coli BL21(DE3)

Quick links