› 6lgj

X-ray diffraction
2.4Å resolution

Crystal structure of an oxido-reductase

Released:
DOI: 10.2210/pdb6lgj/pdb
PDB entry 6lgj coloured by chain, front view.
PDB entry 6lgj coloured by chain, side view.
PDB entry 6lgj coloured by chain, top view.
Source organism: Mus musculus
Entry authors: Yang Y, Lei J, Yin L

Function and Biology Details

Reaction catalysed: 
D-glyceraldehyde 3-phosphate + phosphate + NAD(+) = 3-phospho-D-glyceroyl phosphate + NADH
Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
homo tetramer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-147820 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Glyceraldehyde-3-phosphate dehydrogenase Chains: A, B, C, D
Molecule details ›
Chains: A, B, C, D
Length: 333 amino acids
Theoretical weight: 35.85 KDa
Source organism: Mus musculus
Expression system: Escherichia coli
UniProt:
  • Canonical: P16858 (Residues: 1-333; Coverage: 100%)
Gene names: Gapd, Gapdh
Sequence domains:

Ligands and Environments


Cofactor: Ligand NAD 4 x NAD
No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRF BEAMLINE BL19U1
Spacegroup: P21
Unit cell:
a: 71.14Å b: 112.17Å c: 84.83Å
α: 90° β: 93.01° γ: 90°
R-values:
R R work R free
0.161 0.159 0.216
Expression system: Escherichia coli

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