› › Structure analysis

Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain

Electron Microscopy
2.65Å resolution
PDB entry 6skg coloured by chain, front view.
PDB entry 6skg coloured by chain, side view.
PDB entry 6skg coloured by chain, top view.
Source organism: Thermococcus kodakarensis
Assembly composition:
hetero 69-mer (preferred)
Entry contents: 62 distinct polypeptide molecules
3 distinct RNA molecules

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Assemblies

Assembly 1 (preferred)
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Multimeric state: hetero 69-mer
PDBe Complex ID: PDB-CPX-287859

Macromolecules

Small ribosomal subunit protein uS2
Chain: Ab
Length: 201 amino acids
Theoretical weight: 23.04 KDa
Source organism: Thermococcus kodakarensis
UniProt:
  • Canonical: Q5JJD2 (Residues: 1-201; Coverage: 100%)
Gene names: TK1496, rps2
Pfam: Ribosomal protein S2
InterPro:
Small ribosomal subunit protein uS2 in PDB entry 6skg, assembly 1, front view.
Small ribosomal subunit protein uS2 in PDB entry 6skg, assembly 1, side view.
Small ribosomal subunit protein uS2 in PDB entry 6skg, assembly 1, top view.
PDBe-KB: UniProt Coverage View: Q5JJD2  
120120406080100120140160180200
 
50100150200
UniProt
Q5JJD2
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Small ribosomal subunit protein uS3
Chain: Ac
Length: 209 amino acids
Theoretical weight: 23.39 KDa
Source organism: Thermococcus kodakarensis
UniProt:
  • Canonical: Q5JDH5 (Residues: 1-209; Coverage: 100%)
Gene names: TK1536, rps3
Pfam:
InterPro:
Small ribosomal subunit protein uS3 in PDB entry 6skg, assembly 1, front view.
Small ribosomal subunit protein uS3 in PDB entry 6skg, assembly 1, side view.
Small ribosomal subunit protein uS3 in PDB entry 6skg, assembly 1, top view.
PDBe-KB: UniProt Coverage View: Q5JDH5  
120920406080100120140160180200
 
50100150200
UniProt
Q5JDH5
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Small ribosomal subunit protein eS1
Chain: Ad
Length: 200 amino acids
Theoretical weight: 23.06 KDa
Source organism: Thermococcus kodakarensis
UniProt:
  • Canonical: Q5JGM4 (Residues: 1-200; Coverage: 100%)
Gene names: TK1254, rps3ae
Pfam: Ribosomal S3Ae family
InterPro:
Small ribosomal subunit protein eS1 in PDB entry 6skg, assembly 1, front view.
Small ribosomal subunit protein eS1 in PDB entry 6skg, assembly 1, side view.
Small ribosomal subunit protein eS1 in PDB entry 6skg, assembly 1, top view.
PDBe-KB: UniProt Coverage View: Q5JGM4  
120020406080100120140160180200
 
50100150200
UniProt
Q5JGM4
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Small ribosomal subunit protein uS4
Chain: Ae
Length: 180 amino acids
Theoretical weight: 21.24 KDa
Source organism: Thermococcus kodakarensis
UniProt:
  • Canonical: Q5JJF2 (Residues: 1-180; Coverage: 100%)
Gene names: TK1505, rps4
Pfam:
InterPro:
Small ribosomal subunit protein uS4 in PDB entry 6skg, assembly 1, front view.
Small ribosomal subunit protein uS4 in PDB entry 6skg, assembly 1, side view.
Small ribosomal subunit protein uS4 in PDB entry 6skg, assembly 1, top view.
PDBe-KB: UniProt Coverage View: Q5JJF2  
118020406080100120140160180
 
50100150
UniProt
Q5JJF2
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Small ribosomal subunit protein eS4
Chain: Af
Length: 243 amino acids
Theoretical weight: 27.82 KDa
Source organism: Thermococcus kodakarensis
UniProt:
  • Canonical: Q5JJG0 (Residues: 1-243; Coverage: 100%)
Gene names: TK1529, rps4e
Pfam:
InterPro:
Small ribosomal subunit protein eS4 in PDB entry 6skg, assembly 1, front view.
Small ribosomal subunit protein eS4 in PDB entry 6skg, assembly 1, side view.
Small ribosomal subunit protein eS4 in PDB entry 6skg, assembly 1, top view.
PDBe-KB: UniProt Coverage View: Q5JJG0  
124320406080100120140160180200220240
 
100200
UniProt
Q5JJG0
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Small ribosomal subunit protein uS5
Chain: Ag
Length: 235 amino acids
Theoretical weight: 26.37 KDa
Source organism: Thermococcus kodakarensis
UniProt:
  • Canonical: Q5JJG8 (Residues: 1-235; Coverage: 100%)
Gene names: TK1521, rps5
Pfam:
InterPro:
Small ribosomal subunit protein uS5 in PDB entry 6skg, assembly 1, front view.
Small ribosomal subunit protein uS5 in PDB entry 6skg, assembly 1, side view.
Small ribosomal subunit protein uS5 in PDB entry 6skg, assembly 1, top view.
PDBe-KB: UniProt Coverage View: Q5JJG8  
123520406080100120140160180200220
 
100200
UniProt
Q5JJG8
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Small ribosomal subunit protein eS6
Chain: Ah
Length: 125 amino acids
Theoretical weight: 13.76 KDa
Source organism: Thermococcus kodakarensis
UniProt:
  • Canonical: Q5JDK8 (Residues: 1-125; Coverage: 100%)
Gene names: TK1951, rps6e
Pfam: Ribosomal protein S6e
InterPro:
Small ribosomal subunit protein eS6 in PDB entry 6skg, assembly 1, front view.
Small ribosomal subunit protein eS6 in PDB entry 6skg, assembly 1, side view.
Small ribosomal subunit protein eS6 in PDB entry 6skg, assembly 1, top view.
PDBe-KB: UniProt Coverage View: Q5JDK8  
1125102030405060708090100110120
 
50100
UniProt
Q5JDK8
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Small ribosomal subunit protein uS7
Chain: Ai
Length: 215 amino acids
Theoretical weight: 24.57 KDa
Source organism: Thermococcus kodakarensis
UniProt:
  • Canonical: Q5JE04 (Residues: 1-215; Coverage: 100%)
Gene names: TK1077, rps7
Pfam: Ribosomal protein S7p/S5e
InterPro:
Small ribosomal subunit protein uS7 in PDB entry 6skg, assembly 1, front view.
Small ribosomal subunit protein uS7 in PDB entry 6skg, assembly 1, side view.
Small ribosomal subunit protein uS7 in PDB entry 6skg, assembly 1, top view.
PDBe-KB: UniProt Coverage View: Q5JE04  
121520406080100120140160180200
 
100200
UniProt
Q5JE04
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Small ribosomal subunit protein uS8
Chain: Aj
Length: 130 amino acids
Theoretical weight: 14.6 KDa
Source organism: Thermococcus kodakarensis
UniProt:
  • Canonical: Q5JJG3 (Residues: 1-130; Coverage: 100%)
Gene names: TK1526, rps8
Pfam: Ribosomal protein S8
InterPro:
Small ribosomal subunit protein uS8 in PDB entry 6skg, assembly 1, front view.
Small ribosomal subunit protein uS8 in PDB entry 6skg, assembly 1, side view.
Small ribosomal subunit protein uS8 in PDB entry 6skg, assembly 1, top view.
PDBe-KB: UniProt Coverage View: Q5JJG3  
1130102030405060708090100110120130
 
50100
UniProt
Q5JJG3
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Small ribosomal subunit protein eS8
Chain: Ak
Length: 130 amino acids
Theoretical weight: 14.55 KDa
Source organism: Thermococcus kodakarensis
UniProt:
  • Canonical: Q5JGF3 (Residues: 1-130; Coverage: 100%)
Gene names: TK1191, rps8e
Pfam: Ribosomal protein S8e
InterPro:
Small ribosomal subunit protein eS8 in PDB entry 6skg, assembly 1, front view.
Small ribosomal subunit protein eS8 in PDB entry 6skg, assembly 1, side view.
Small ribosomal subunit protein eS8 in PDB entry 6skg, assembly 1, top view.
PDBe-KB: UniProt Coverage View: Q5JGF3  
1130102030405060708090100110120130
 
50100
UniProt
Q5JGF3
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Small ribosomal subunit protein uS9
Chain: Al
Length: 135 amino acids
Theoretical weight: 15.36 KDa
Source organism: Thermococcus kodakarensis
UniProt:
  • Canonical: Q5JJE2 (Residues: 1-135; Coverage: 100%)
Gene names: TK1500, rps9
Pfam: Ribosomal protein S9/S16
InterPro:
Small ribosomal subunit protein uS9 in PDB entry 6skg, assembly 1, front view.
Small ribosomal subunit protein uS9 in PDB entry 6skg, assembly 1, side view.
Small ribosomal subunit protein uS9 in PDB entry 6skg, assembly 1, top view.
PDBe-KB: UniProt Coverage View: Q5JJE2  
1135102030405060708090100110120130
 
50100
UniProt
Q5JJE2
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Small ribosomal subunit protein uS10
Chain: Am
Length: 102 amino acids
Theoretical weight: 11.72 KDa
Source organism: Thermococcus kodakarensis
UniProt:
  • Canonical: Q5JFZ5 (Residues: 1-102; Coverage: 100%)
Gene names: TK0307, rps10
Pfam: Ribosomal protein S10p/S20e
InterPro:
Small ribosomal subunit protein uS10 in PDB entry 6skg, assembly 1, front view.
Small ribosomal subunit protein uS10 in PDB entry 6skg, assembly 1, side view.
Small ribosomal subunit protein uS10 in PDB entry 6skg, assembly 1, top view.
PDBe-KB: UniProt Coverage View: Q5JFZ5  
1102102030405060708090100
 
50100MQKARIKLASTNIKALNEVTDQIKQIAERTGVRMSGPIPLPTKRIRITTRKSPDGEGSATFDRFELRVHKRLVDIEADERAMRQIMRIRVPEDVTIEIELIS
UniProt
Q5JFZ5
Chains
Domains
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Small ribosomal subunit protein uS11
Chain: An
Length: 140 amino acids
Theoretical weight: 15.11 KDa
Source organism: Thermococcus kodakarensis
UniProt:
  • Canonical: Q5JJF3 (Residues: 1-140; Coverage: 100%)
Gene names: TK1504, rps11
Pfam: Ribosomal protein S11
InterPro:
Small ribosomal subunit protein uS11 in PDB entry 6skg, assembly 1, front view.
Small ribosomal subunit protein uS11 in PDB entry 6skg, assembly 1, side view.
Small ribosomal subunit protein uS11 in PDB entry 6skg, assembly 1, top view.
PDBe-KB: UniProt Coverage View: Q5JJF3  
1140102030405060708090100110120130140
 
50100
UniProt
Q5JJF3
Chains
Domains
Flexibility predictions
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Small ribosomal subunit protein uS12
Chain: Ao
Length: 147 amino acids
Theoretical weight: 16.49 KDa
Source organism: Thermococcus kodakarensis
UniProt:
  • Canonical: Q5JE20 (Residues: 1-147; Coverage: 100%)
Gene names: TK1078, rps12
Pfam: Ribosomal protein S12/S23
InterPro:
Small ribosomal subunit protein uS12 in PDB entry 6skg, assembly 1, front view.
Small ribosomal subunit protein uS12 in PDB entry 6skg, assembly 1, side view.
Small ribosomal subunit protein uS12 in PDB entry 6skg, assembly 1, top view.
PDBe-KB: UniProt Coverage View: Q5JE20  
114720406080100120140
 
50100
UniProt
Q5JE20
Chains
Domains
Sequence conservation
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Small ribosomal subunit protein uS13
Chain: Ap
Length: 149 amino acids
Theoretical weight: 17.03 KDa
Source organism: Thermococcus kodakarensis
UniProt:
  • Canonical: Q5JJF1 (Residues: 1-149; Coverage: 100%)
Gene names: TK1506, rps13
Pfam: Ribosomal protein S13/S18
InterPro:
Small ribosomal subunit protein uS13 in PDB entry 6skg, assembly 1, front view.
Small ribosomal subunit protein uS13 in PDB entry 6skg, assembly 1, side view.
Small ribosomal subunit protein uS13 in PDB entry 6skg, assembly 1, top view.
PDBe-KB: UniProt Coverage View: Q5JJF1  
114920406080100120140
 
50100150
UniProt
Q5JJF1
Chains
Domains
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Small ribosomal subunit protein uS15
Chain: Aq
Length: 151 amino acids
Theoretical weight: 17.58 KDa
Source organism: Thermococcus kodakarensis
UniProt:
  • Canonical: Q5JGJ4 (Residues: 1-151; Coverage: 100%)
Gene names: TK1251, rps15
Pfam:
InterPro:
Small ribosomal subunit protein uS15 in PDB entry 6skg, assembly 1, front view.
Small ribosomal subunit protein uS15 in PDB entry 6skg, assembly 1, side view.
Small ribosomal subunit protein uS15 in PDB entry 6skg, assembly 1, top view.
PDBe-KB: UniProt Coverage View: Q5JGJ4  
115120406080100120140
 
50100150
UniProt
Q5JGJ4
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Small ribosomal subunit protein uS14
Chain: Ar
Length: 56 amino acids
Theoretical weight: 6.63 KDa
Source organism: Thermococcus kodakarensis
UniProt:
  • Canonical: Q5JJG2 (Residues: 1-56; Coverage: 100%)
Gene names: TK1527, rps14
Pfam: Ribosomal protein S14p/S29e
InterPro:
Small ribosomal subunit protein uS14 in PDB entry 6skg, assembly 1, front view.
Small ribosomal subunit protein uS14 in PDB entry 6skg, assembly 1, side view.
Small ribosomal subunit protein uS14 in PDB entry 6skg, assembly 1, top view.
PDBe-KB: UniProt Coverage View: Q5JJG2  
156510152025303540455055
 
2040MAKADYNKRKPRKFGKGARRCMRCGQYGPIIRIHGLMLCRHCFREVAPKLGFKKYE
UniProt
Q5JJG2
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Domains
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Sequence conservation
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Small ribosomal subunit protein uS17
Chain: As
Length: 114 amino acids
Theoretical weight: 13.22 KDa
Source organism: Thermococcus kodakarensis
UniProt:
  • Canonical: Q5JDH9 (Residues: 1-114; Coverage: 100%)
Gene names: TK1532, rps17
Pfam: Ribosomal protein S17
InterPro:
Small ribosomal subunit protein uS17 in PDB entry 6skg, assembly 1, front view.
Small ribosomal subunit protein uS17 in PDB entry 6skg, assembly 1, side view.
Small ribosomal subunit protein uS17 in PDB entry 6skg, assembly 1, top view.
PDBe-KB: UniProt Coverage View: Q5JDH9  
1114102030405060708090100110
 
50100
UniProt
Q5JDH9
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Domains
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Small ribosomal subunit protein eS17
Chains: At, Bm
Length: 67 amino acids
Theoretical weight: 8.04 KDa
Source organism: Thermococcus kodakarensis
UniProt:
  • Canonical: Q5JDC7 (Residues: 1-67; Coverage: 100%)
Gene names: TK2292, rps17e
Pfam: Ribosomal S17
InterPro:
Small ribosomal subunit protein eS17 in PDB entry 6skg, assembly 1, front view.
Small ribosomal subunit protein eS17 in PDB entry 6skg, assembly 1, side view.
Small ribosomal subunit protein eS17 in PDB entry 6skg, assembly 1, top view.
PDBe-KB: UniProt Coverage View: Q5JDC7  
1675101520253035404550556065
 
204060MGNIKQTFIKRTARELFDRYPDKFTRDFEHNKKMVAELTNVTSKTIRNRIAGYITRLVRMKEEGKIL
UniProt
Q5JDC7
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Domains
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Small ribosomal subunit protein uS19
Chain: Au
Length: 133 amino acids
Theoretical weight: 15.45 KDa
Source organism: Thermococcus kodakarensis
UniProt:
  • Canonical: Q5JDH3 (Residues: 1-133; Coverage: 100%)
Gene names: TK1538, rps19
Pfam: Ribosomal protein S19
InterPro:
Small ribosomal subunit protein uS19 in PDB entry 6skg, assembly 1, front view.
Small ribosomal subunit protein uS19 in PDB entry 6skg, assembly 1, side view.
Small ribosomal subunit protein uS19 in PDB entry 6skg, assembly 1, top view.
PDBe-KB: UniProt Coverage View: Q5JDH3  
1133102030405060708090100110120130
 
50100
UniProt
Q5JDH3
Chains
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Small ribosomal subunit protein eS19
Chain: Av
Length: 150 amino acids
Theoretical weight: 17.3 KDa
Source organism: Thermococcus kodakarensis
UniProt:
  • Canonical: Q5JGN5 (Residues: 1-150; Coverage: 100%)
Gene names: TK1276, rps19e
Pfam: Ribosomal protein S19e
InterPro:
Small ribosomal subunit protein eS19 in PDB entry 6skg, assembly 1, front view.
Small ribosomal subunit protein eS19 in PDB entry 6skg, assembly 1, side view.
Small ribosomal subunit protein eS19 in PDB entry 6skg, assembly 1, top view.
PDBe-KB: UniProt Coverage View: Q5JGN5  
115020406080100120140
 
50100150
UniProt
Q5JGN5
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Domains
Sequence conservation
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Small ribosomal subunit protein eS24
Chains: Aw, Bn
Length: 98 amino acids
Theoretical weight: 11.46 KDa
Source organism: Thermococcus kodakarensis
UniProt:
  • Canonical: Q5JIY8 (Residues: 1-98; Coverage: 100%)
Gene names: TK1696, rps24e
Pfam: Ribosomal protein S24e
InterPro:
Small ribosomal subunit protein eS24 in PDB entry 6skg, assembly 1, front view.
Small ribosomal subunit protein eS24 in PDB entry 6skg, assembly 1, side view.
Small ribosomal subunit protein eS24 in PDB entry 6skg, assembly 1, top view.
PDBe-KB: UniProt Coverage View: Q5JIY8  
198102030405060708090
 
50MEIKVTEIRENKLLGRKEIYFDVLHEGEPTPSREAVKGKLVAMLDLDPNTTVIQYIRSYFGSNVSKGYAKAYETRERMLYIEPEYILVRDGLVQKQEE
UniProt
Q5JIY8
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Domains
Sequence conservation
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Small ribosomal subunit protein eS27
Chain: Ax
Length: 65 amino acids
Theoretical weight: 7.09 KDa
Source organism: Thermococcus kodakarensis
UniProt:
  • Canonical: Q5JE50 (Residues: 1-65; Coverage: 100%)
Gene names: TK1099, rps27e
Pfam: Ribosomal protein S27
InterPro:
Small ribosomal subunit protein eS27 in PDB entry 6skg, assembly 1, front view.
Small ribosomal subunit protein eS27 in PDB entry 6skg, assembly 1, side view.
Small ribosomal subunit protein eS27 in PDB entry 6skg, assembly 1, top view.
PDBe-KB: UniProt Coverage View: Q5JE50  
1655101520253035404550556065
 
204060MALPKNLIPMPRSRFLRVKCIDCGNEQIVFSHPATPVRCLVCGATLVEPTGGKGIIKAKVLEVEE
UniProt
Q5JE50
Chains
Domains
Ligand binding sites
Sequence conservation
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Small ribosomal subunit protein eS28
Chain: Ay
Length: 70 amino acids
Theoretical weight: 7.97 KDa
Source organism: Thermococcus kodakarensis
UniProt:
  • Canonical: Q5JGR4 (Residues: 1-70; Coverage: 100%)
Gene names: TK1310, rps28e
Pfam: Ribosomal protein S28e
InterPro:
Small ribosomal subunit protein eS28 in PDB entry 6skg, assembly 1, front view.
Small ribosomal subunit protein eS28 in PDB entry 6skg, assembly 1, side view.
Small ribosomal subunit protein eS28 in PDB entry 6skg, assembly 1, top view.
PDBe-KB: UniProt Coverage View: Q5JGR4  
170510152025303540455055606570
 
204060MSDEGYPAEVIEIVGRTGVTGGVTQVKVRILEGRDKGRVIRRNVKGPVRVGDIVILRETEREAREIRRRR
UniProt
Q5JGR4
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Domains
Sequence conservation
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Double zinc ribbon protein TK0111
Chain: Az
Length: 62 amino acids
Theoretical weight: 7 KDa
Source organism: Thermococcus kodakarensis
UniProt:
  • Canonical: Q5JFE2 (Residues: 1-62; Coverage: 100%)
Gene name: TK0111
Pfam: Small zinc finger protein HVO_2753-like, Zn-binding pocket
InterPro:
Small zinc finger protein HVO-2753-like zinc-binding pocket domain-containing protein in PDB entry 6skg, assembly 1, front view.
Small zinc finger protein HVO-2753-like zinc-binding pocket domain-containing protein in PDB entry 6skg, assembly 1, side view.
Small zinc finger protein HVO-2753-like zinc-binding pocket domain-containing protein in PDB entry 6skg, assembly 1, top view.
PDBe-KB: UniProt Coverage View: Q5JFE2  
16251015202530354045505560
 
204060MFAVEMKFEVPVCTSCGKEITPREHATHFVCPNCGEAIIWRCESCRVLSVPYKCPKCGWEGP
UniProt
Q5JFE2
Chains
Domains
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Sequence conservation
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Large ribosomal subunit protein uL2
Chain: BC
Length: 239 amino acids
Theoretical weight: 26.09 KDa
Source organism: Thermococcus kodakarensis
UniProt:
  • Canonical: Q5JDH2 (Residues: 1-239; Coverage: 100%)
Gene names: TK1539, rpl2
Pfam:
InterPro:
Large ribosomal subunit protein uL2 in PDB entry 6skg, assembly 1, front view.
Large ribosomal subunit protein uL2 in PDB entry 6skg, assembly 1, side view.
Large ribosomal subunit protein uL2 in PDB entry 6skg, assembly 1, top view.
PDBe-KB: UniProt Coverage View: Q5JDH2  
123920406080100120140160180200220
 
100200
UniProt
Q5JDH2
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Large ribosomal subunit protein uL3
Chain: BD
Length: 346 amino acids
Theoretical weight: 39.12 KDa
Source organism: Thermococcus kodakarensis
UniProt:
  • Canonical: Q5JDJ0 (Residues: 1-346; Coverage: 100%)
Gene names: TK1542, rpl3
Pfam: Ribosomal protein L3
InterPro:
Large ribosomal subunit protein uL3 in PDB entry 6skg, assembly 1, front view.
Large ribosomal subunit protein uL3 in PDB entry 6skg, assembly 1, side view.
Large ribosomal subunit protein uL3 in PDB entry 6skg, assembly 1, top view.
PDBe-KB: UniProt Coverage View: Q5JDJ0  
134650100150200250300
 
100200300
UniProt
Q5JDJ0
Chains
Domains
Flexibility predictions
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Large ribosomal subunit protein uL4
Chain: BE
Length: 255 amino acids
Theoretical weight: 28.77 KDa
Source organism: Thermococcus kodakarensis
UniProt:
  • Canonical: Q5JDI0 (Residues: 1-255; Coverage: 100%)
Gene names: TK1541, rpl4
Pfam: Ribosomal protein L4/L1 family
InterPro:
Large ribosomal subunit protein uL4 in PDB entry 6skg, assembly 1, front view.
Large ribosomal subunit protein uL4 in PDB entry 6skg, assembly 1, side view.
Large ribosomal subunit protein uL4 in PDB entry 6skg, assembly 1, top view.
PDBe-KB: UniProt Coverage View: Q5JDI0  
125520406080100120140160180200220240
 
100200
UniProt
Q5JDI0
Chains
Domains
Sequence conservation
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Large ribosomal subunit protein uL5
Chain: BF
Length: 183 amino acids
Theoretical weight: 21.03 KDa
Source organism: Thermococcus kodakarensis
UniProt:
  • Canonical: Q5JJG1 (Residues: 1-183; Coverage: 100%)
Gene names: TK1528, rpl5
Pfam:
InterPro:
Large ribosomal subunit protein uL5 in PDB entry 6skg, assembly 1, front view.
Large ribosomal subunit protein uL5 in PDB entry 6skg, assembly 1, side view.
Large ribosomal subunit protein uL5 in PDB entry 6skg, assembly 1, top view.
PDBe-KB: UniProt Coverage View: Q5JJG1  
118320406080100120140160180
 
50100150
UniProt
Q5JJG1
Chains
Domains
Sequence conservation
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Large ribosomal subunit protein uL6
Chain: BG
Length: 184 amino acids
Theoretical weight: 20.89 KDa
Source organism: Thermococcus kodakarensis
UniProt:
  • Canonical: Q5JJG4 (Residues: 1-184; Coverage: 100%)
Gene names: TK1525, rpl6
Pfam: Ribosomal protein L6
InterPro:
Large ribosomal subunit protein uL6 in PDB entry 6skg, assembly 1, front view.
Large ribosomal subunit protein uL6 in PDB entry 6skg, assembly 1, side view.
Large ribosomal subunit protein uL6 in PDB entry 6skg, assembly 1, top view.
PDBe-KB: UniProt Coverage View: Q5JJG4  
118420406080100120140160180
 
50100150
UniProt
Q5JJG4
Chains
Domains
Sequence conservation
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Large ribosomal subunit protein eL8
Chains: BH, BI
Length: 123 amino acids
Theoretical weight: 13.45 KDa
Source organism: Thermococcus kodakarensis
UniProt:
  • Canonical: Q5JGR3 (Residues: 1-123; Coverage: 100%)
Gene names: TK1311, rpl7ae
Pfam: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
InterPro:
Large ribosomal subunit protein eL8 in PDB entry 6skg, assembly 1, front view.
Large ribosomal subunit protein eL8 in PDB entry 6skg, assembly 1, side view.
Large ribosomal subunit protein eL8 in PDB entry 6skg, assembly 1, top view.
PDBe-KB: UniProt Coverage View: Q5JGR3  
1123102030405060708090100110120
 
50100
UniProt
Q5JGR3
Chains
Domains
Sequence conservation
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Large ribosomal subunit protein uL16
Chain: BJ
Length: 182 amino acids
Theoretical weight: 21.12 KDa
Source organism: Thermococcus kodakarensis
UniProt:
  • Canonical: Q5JDI6 (Residues: 1-182; Coverage: 100%)
Gene names: TK1546, rpl10e
Pfam: Ribosomal protein L16p/L10e
InterPro:
Large ribosomal subunit protein uL16 in PDB entry 6skg, assembly 1, front view.
Large ribosomal subunit protein uL16 in PDB entry 6skg, assembly 1, side view.
Large ribosomal subunit protein uL16 in PDB entry 6skg, assembly 1, top view.
PDBe-KB: UniProt Coverage View: Q5JDI6  
118220406080100120140160180
 
50100150
UniProt
Q5JDI6
Chains
Domains
Sequence conservation
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Large ribosomal subunit protein uL13
Chain: BK
Length: 142 amino acids
Theoretical weight: 16.32 KDa
Source organism: Thermococcus kodakarensis
UniProt:
  • Canonical: Q5JJF6 (Residues: 1-142; Coverage: 100%)
Gene names: TK1501, rpl13
Pfam: Ribosomal protein L13
InterPro:
Large ribosomal subunit protein uL13 in PDB entry 6skg, assembly 1, front view.
Large ribosomal subunit protein uL13 in PDB entry 6skg, assembly 1, side view.
Large ribosomal subunit protein uL13 in PDB entry 6skg, assembly 1, top view.
PDBe-KB: UniProt Coverage View: Q5JJF6  
1142102030405060708090100110120130140
 
50100
UniProt
Q5JJF6
Chains
Domains
Sequence conservation
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Large ribosomal subunit protein uL14
Chain: BL
Length: 141 amino acids
Theoretical weight: 15.18 KDa
Source organism: Thermococcus kodakarensis
UniProt:
  • Canonical: Q5JJF8 (Residues: 1-141; Coverage: 100%)
Gene names: TK1531, rpl14
Pfam: Ribosomal protein L14p/L23e
InterPro:
Large ribosomal subunit protein uL14 in PDB entry 6skg, assembly 1, front view.
Large ribosomal subunit protein uL14 in PDB entry 6skg, assembly 1, side view.
Large ribosomal subunit protein uL14 in PDB entry 6skg, assembly 1, top view.
PDBe-KB: UniProt Coverage View: Q5JJF8  
1141102030405060708090100110120130140
 
50100
UniProt
Q5JJF8
Chains
Domains
Sequence conservation
Molecule details ›

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Large ribosomal subunit protein eL14
Chains: BM, BN
Length: 83 amino acids
Theoretical weight: 8.97 KDa
Source organism: Thermococcus kodakarensis
UniProt:
  • Canonical: Q5JJE4 (Residues: 1-83; Coverage: 100%)
Gene names: TK1513, rpl14e
InterPro:
Large ribosomal subunit protein eL14 in PDB entry 6skg, assembly 1, front view.
Large ribosomal subunit protein eL14 in PDB entry 6skg, assembly 1, side view.
Large ribosomal subunit protein eL14 in PDB entry 6skg, assembly 1, top view.
PDBe-KB: UniProt Coverage View: Q5JJE4  
1831020304050607080
 
20406080MPAIEVGRIAVVIAGRRAGQKVVVADIIDKNFVLVTGAGLNKVKRRRMNVKHLEPLPERVNIQRGASDEEIKAALEGAGISLE
UniProt
Q5JJE4
Chains
Domains
Sequence conservation
Molecule details ›

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Large ribosomal subunit protein uL15
Chain: BO
Length: 148 amino acids
Theoretical weight: 16.57 KDa
Source organism: Thermococcus kodakarensis
UniProt:
  • Canonical: Q5JJH0 (Residues: 1-148; Coverage: 100%)
Gene names: TK1519, rpl15
Pfam: Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
InterPro:
Large ribosomal subunit protein uL15 in PDB entry 6skg, assembly 1, front view.
Large ribosomal subunit protein uL15 in PDB entry 6skg, assembly 1, side view.
Large ribosomal subunit protein uL15 in PDB entry 6skg, assembly 1, top view.
PDBe-KB: UniProt Coverage View: Q5JJH0  
114820406080100120140
 
50100
UniProt
Q5JJH0
Chains
Domains
Flexibility predictions
Sequence conservation
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Large ribosomal subunit protein eL15
Chain: BP
Length: 194 amino acids
Theoretical weight: 22.61 KDa
Source organism: Thermococcus kodakarensis
UniProt:
  • Canonical: Q5JH43 (Residues: 1-194; Coverage: 100%)
Gene names: TK1454, rpl15e
Pfam: Ribosomal L15
InterPro:
Large ribosomal subunit protein eL15 in PDB entry 6skg, assembly 1, front view.
Large ribosomal subunit protein eL15 in PDB entry 6skg, assembly 1, side view.
Large ribosomal subunit protein eL15 in PDB entry 6skg, assembly 1, top view.
PDBe-KB: UniProt Coverage View: Q5JH43  
119420406080100120140160180
 
50100150
UniProt
Q5JH43
Chains
Domains
Flexibility predictions
Sequence conservation
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Large ribosomal subunit protein uL18
Chain: BQ
Length: 201 amino acids
Theoretical weight: 22.9 KDa
Source organism: Thermococcus kodakarensis
UniProt:
  • Canonical: Q5JJG7 (Residues: 1-201; Coverage: 100%)
Gene names: TK1522, rpl18
Pfam: Ribosomal large subunit proteins 60S L5, and 50S L18
InterPro: Large ribosomal subunit protein uL18 eukaryotic/archaeal
Large ribosomal subunit protein uL18 in PDB entry 6skg, assembly 1, front view.
Large ribosomal subunit protein uL18 in PDB entry 6skg, assembly 1, side view.
Large ribosomal subunit protein uL18 in PDB entry 6skg, assembly 1, top view.
PDBe-KB: UniProt Coverage View: Q5JJG7  
120120406080100120140160180200
 
50100150200
UniProt
Q5JJG7
Chains
Domains
Sequence conservation
Molecule details ›

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Large ribosomal subunit protein eL18
Chain: BR
Length: 121 amino acids
Theoretical weight: 13.8 KDa
Source organism: Thermococcus kodakarensis
UniProt:
  • Canonical: Q5JJF5 (Residues: 1-121; Coverage: 100%)
Gene names: TK1502, rpl18e
Pfam: Ribosomal protein 60S L18 and 50S L18e
InterPro:
Large ribosomal subunit protein eL18 in PDB entry 6skg, assembly 1, front view.
Large ribosomal subunit protein eL18 in PDB entry 6skg, assembly 1, side view.
Large ribosomal subunit protein eL18 in PDB entry 6skg, assembly 1, top view.
PDBe-KB: UniProt Coverage View: Q5JJF5  
1121102030405060708090100110120
 
50100
UniProt
Q5JJF5
Chains
Domains
Sequence conservation
Molecule details ›

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Large ribosomal subunit protein eL19
Chain: BS
Length: 150 amino acids
Theoretical weight: 17.67 KDa
Source organism: Thermococcus kodakarensis
UniProt:
  • Canonical: Q5JJG6 (Residues: 1-150; Coverage: 100%)
Gene names: TK1523, rpl19e
Pfam: Ribosomal protein L19e
InterPro:
Large ribosomal subunit protein eL19 in PDB entry 6skg, assembly 1, front view.
Large ribosomal subunit protein eL19 in PDB entry 6skg, assembly 1, side view.
Large ribosomal subunit protein eL19 in PDB entry 6skg, assembly 1, top view.
PDBe-KB: UniProt Coverage View: Q5JJG6  
115020406080100120140
 
50100150
UniProt
Q5JJG6
Chains
Domains
Flexibility predictions
Sequence conservation
Molecule details ›

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Large ribosomal subunit protein eL20
Chain: BT
Length: 77 amino acids
Theoretical weight: 9.23 KDa
Source organism: Thermococcus kodakarensis
UniProt:
  • Canonical: Q5JGT3 (Residues: 1-77; Coverage: 100%)
Gene names: TK1322, rpl18a, rpl20e, rplX
Pfam: Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A
InterPro:
Large ribosomal subunit protein eL20 in PDB entry 6skg, assembly 1, front view.
Large ribosomal subunit protein eL20 in PDB entry 6skg, assembly 1, side view.
Large ribosomal subunit protein eL20 in PDB entry 6skg, assembly 1, top view.
PDBe-KB: UniProt Coverage View: Q5JGT3  
17710203040506070
 
204060MEVKVFRVKGTFERLGKKQPFTKEYRALKEEHVRELVYSDIGSKHRVPRTKIWIESIEEIKPEEAEDPVVRRLSLEL
UniProt
Q5JGT3
Chains
Domains
Sequence conservation
Molecule details ›

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Large ribosomal subunit protein eL21
Chain: BU
Length: 98 amino acids
Theoretical weight: 11.29 KDa
Source organism: Thermococcus kodakarensis
UniProt:
  • Canonical: Q5JI51 (Residues: 1-98; Coverage: 100%)
Gene names: TK0902, rpl21e
Pfam: Ribosomal protein L21e
InterPro:
Large ribosomal subunit protein eL21 in PDB entry 6skg, assembly 1, front view.
Large ribosomal subunit protein eL21 in PDB entry 6skg, assembly 1, side view.
Large ribosomal subunit protein eL21 in PDB entry 6skg, assembly 1, top view.
PDBe-KB: UniProt Coverage View: Q5JI51  
198102030405060708090
 
50MVKKAHSFRRKTRGKLSKHPRRRGLPPLTRFLQEFEVGQKVHIVIEPSYHKGMPDPRFHGRTGTVVGKRGDAYIVQITDGGKVKTFFIHPVHLRPQKG
UniProt
Q5JI51
Chains
Domains
Flexibility predictions
Sequence conservation
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Large ribosomal subunit protein uL22
Chain: BV
Length: 156 amino acids
Theoretical weight: 17.84 KDa
Source organism: Thermococcus kodakarensis
UniProt:
  • Canonical: Q5JDH4 (Residues: 1-156; Coverage: 100%)
Gene names: TK1537, rpl22
Pfam: Ribosomal protein L22p/L17e
InterPro:
Large ribosomal subunit protein uL22 in PDB entry 6skg, assembly 1, front view.
Large ribosomal subunit protein uL22 in PDB entry 6skg, assembly 1, side view.
Large ribosomal subunit protein uL22 in PDB entry 6skg, assembly 1, top view.
PDBe-KB: UniProt Coverage View: Q5JDH4  
115620406080100120140
 
50100150
UniProt
Q5JDH4
Chains
Domains
Sequence conservation
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Large ribosomal subunit protein uL23
Chain: BW
Length: 86 amino acids
Theoretical weight: 9.92 KDa
Source organism: Thermococcus kodakarensis
UniProt:
  • Canonical: Q5JDH1 (Residues: 1-86; Coverage: 100%)
Gene names: TK1540, rpl23
Pfam: Ribosomal protein L23
InterPro:
Large ribosomal subunit protein uL23 in PDB entry 6skg, assembly 1, front view.
Large ribosomal subunit protein uL23 in PDB entry 6skg, assembly 1, side view.
Large ribosomal subunit protein uL23 in PDB entry 6skg, assembly 1, top view.
PDBe-KB: UniProt Coverage View: Q5JDH1  
1861020304050607080
 
20406080MDPYKVIIRPLVTEKAVSLIERENKLTFIVDRRATKQDIKRAVEEMFNVKVAKVNTLVTMKGEKKAYVKLKPEYDASEIAARLGLF
UniProt
Q5JDH1
Chains
Domains
Sequence conservation
Molecule details ›

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Large ribosomal subunit protein uL24
Chain: BX
Length: 121 amino acids
Theoretical weight: 14.23 KDa
Source organism: Thermococcus kodakarensis
UniProt:
  • Canonical: Q5JJF9 (Residues: 1-121; Coverage: 100%)
Gene names: TK1530, rpl24
Pfam:
InterPro:
Large ribosomal subunit protein uL24 in PDB entry 6skg, assembly 1, front view.
Large ribosomal subunit protein uL24 in PDB entry 6skg, assembly 1, side view.
Large ribosomal subunit protein uL24 in PDB entry 6skg, assembly 1, top view.
PDBe-KB: UniProt Coverage View: Q5JJF9  
1121102030405060708090100110120
 
50100
UniProt
Q5JJF9
Chains
Domains
Sequence conservation
Molecule details ›

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Large ribosomal subunit protein eL24
Chain: BY
Length: 67 amino acids
Theoretical weight: 8.11 KDa
Source organism: Thermococcus kodakarensis
UniProt:
  • Canonical: Q5JGR5 (Residues: 1-67; Coverage: 100%)
Gene names: TK1309, rpl24e
Pfam: Ribosomal protein L24e
InterPro:
Large ribosomal subunit protein eL24 in PDB entry 6skg, assembly 1, front view.
Large ribosomal subunit protein eL24 in PDB entry 6skg, assembly 1, side view.
Large ribosomal subunit protein eL24 in PDB entry 6skg, assembly 1, top view.
PDBe-KB: UniProt Coverage View: Q5JGR5  
1675101520253035404550556065
 
204060MARWNVCSYCGREFEPGTGKMFVRNDGRVLFFCSSKCEKYYFMGRNPRKLKWTKAFQEARLQRAKRK
UniProt
Q5JGR5
Chains
Domains
Ligand binding sites
Sequence conservation
Molecule details ›

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Large ribosomal subunit protein uL29
Chain: BZ
Length: 66 amino acids
Theoretical weight: 7.94 KDa
Source organism: Thermococcus kodakarensis
UniProt:
  • Canonical: Q5JDH6 (Residues: 1-66; Coverage: 100%)
Gene names: TK1535, rpl29
Pfam: Ribosomal L29 protein
InterPro:
Large ribosomal subunit protein uL29 in PDB entry 6skg, assembly 1, front view.
Large ribosomal subunit protein uL29 in PDB entry 6skg, assembly 1, side view.
Large ribosomal subunit protein uL29 in PDB entry 6skg, assembly 1, top view.
PDBe-KB: UniProt Coverage View: Q5JDH6  
1665101520253035404550556065
 
204060MKPSEIREMSIEEIDKKIRELRLELAKERGVLTMGASMENPMVIRNLRRDIARLLTIKREKLREKR
UniProt
Q5JDH6
Chains
Domains
Sequence conservation
Molecule details ›

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Large ribosomal subunit protein uL30
Chain: Ba
Length: 155 amino acids
Theoretical weight: 17.86 KDa
Source organism: Thermococcus kodakarensis
UniProt:
  • Canonical: Q5JJG9 (Residues: 1-155; Coverage: 100%)
Gene names: TK1520, rpl30
Pfam: Ribosomal protein L30p/L7e
InterPro:
Large ribosomal subunit protein uL30 in PDB entry 6skg, assembly 1, front view.
Large ribosomal subunit protein uL30 in PDB entry 6skg, assembly 1, side view.
Large ribosomal subunit protein uL30 in PDB entry 6skg, assembly 1, top view.
PDBe-KB: UniProt Coverage View: Q5JJG9  
115520406080100120140
 
50100150
UniProt
Q5JJG9
Chains
Domains
Sequence conservation
Molecule details ›

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Large ribosomal subunit protein eL30
Chain: Bb
Length: 102 amino acids
Theoretical weight: 10.97 KDa
Source organism: Thermococcus kodakarensis
UniProt:
  • Canonical: Q5JE35 (Residues: 1-102; Coverage: 100%)
Gene names: TK1080, rpl30e
Pfam: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
InterPro:
Large ribosomal subunit protein eL30 in PDB entry 6skg, assembly 1, front view.
Large ribosomal subunit protein eL30 in PDB entry 6skg, assembly 1, side view.
Large ribosomal subunit protein eL30 in PDB entry 6skg, assembly 1, top view.
PDBe-KB: UniProt Coverage View: Q5JE35  
1102102030405060708090100
 
50100MVDFAFELRKVQDTGKIVMGAKKSIHLAKVGGAKLIIVARNARPDIKEDIYYYAKLSGIPVYEFEGTSVELGTLLGRPHTVSALAVIDPGESKILALAGGKE
UniProt
Q5JE35
Chains
Domains
Sequence conservation
Molecule details ›

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Large ribosomal subunit protein eL31
Chain: Bc
Length: 90 amino acids
Theoretical weight: 10.35 KDa
Source organism: Thermococcus kodakarensis
UniProt:
  • Canonical: Q5JGT5 (Residues: 1-90; Coverage: 100%)
Gene names: TK1320, rpl31e
Pfam: Ribosomal protein L31e
InterPro:
Large ribosomal subunit protein eL31 in PDB entry 6skg, assembly 1, front view.
Large ribosomal subunit protein eL31 in PDB entry 6skg, assembly 1, side view.
Large ribosomal subunit protein eL31 in PDB entry 6skg, assembly 1, top view.
PDBe-KB: UniProt Coverage View: Q5JGT5  
190102030405060708090
 
20406080MPIKPGEEVIFVVPINKIKKRVPRWKRAPRAARFVREWIARHAKADEVIIGTDVNEKIWERGAEKPPGKLRVKVVVEESEGKRIARVSLA
UniProt
Q5JGT5
Chains
Domains
Sequence conservation
Molecule details ›

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Large ribosomal subunit protein eL32
Chain: Bd
Length: 125 amino acids
Theoretical weight: 14.65 KDa
Source organism: Thermococcus kodakarensis
UniProt:
  • Canonical: Q5JJG5 (Residues: 1-125; Coverage: 99%)
Gene names: TK1524, rpl32e
Pfam: Ribosomal protein L32
InterPro:
Large ribosomal subunit protein eL32 in PDB entry 6skg, assembly 1, front view.
Large ribosomal subunit protein eL32 in PDB entry 6skg, assembly 1, side view.
Large ribosomal subunit protein eL32 in PDB entry 6skg, assembly 1, top view.
PDBe-KB: UniProt Coverage View: Q5JJG5  
1125102030405060708090100110120
 
50100
UniProt
Q5JJG5
Chains
Domains
Sequence conservation
Molecule details ›

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Large ribosomal subunit protein eL34
Chain: Be
Length: 90 amino acids
Theoretical weight: 10.56 KDa
Source organism: Thermococcus kodakarensis
UniProt:
  • Canonical: Q5JJF7 (Residues: 1-90; Coverage: 100%)
Gene names: TK1515, rpl34e
Pfam: Ribosomal protein L34e
InterPro:
Large ribosomal subunit protein eL34 in PDB entry 6skg, assembly 1, front view.
Large ribosomal subunit protein eL34 in PDB entry 6skg, assembly 1, side view.
Large ribosomal subunit protein eL34 in PDB entry 6skg, assembly 1, top view.
PDBe-KB: UniProt Coverage View: Q5JJF7  
190102030405060708090
 
20406080MKPMYRSRSWRRKYVRTPGGRTVIHFERRKPKVAHCAMCGRPLNGVPRGRPSELRKLPKTKKRPERPYPNLCPSCMRKVMKAQVRASITA
UniProt
Q5JJF7
Chains
Domains
Flexibility predictions
Ligand binding sites
Sequence conservation
Molecule details ›

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Ribosomal protein eL35A
Chain: Bf
Length: 101 amino acids
Theoretical weight: 11.06 KDa
Source organism: Thermococcus kodakarensis
InterPro:
Ribosomal protein eL35A in PDB entry 6skg, assembly 1, front view.
Ribosomal protein eL35A in PDB entry 6skg, assembly 1, side view.
Ribosomal protein eL35A in PDB entry 6skg, assembly 1, top view.
1101102030405060708090100
 
50100MNGTTPWPEAEGVVVVRKAVVLSYVGSHEHRDPNRVILKPLDVNDRGSAARLIGRKVVWRTPTGRKLVGKIVRTHGTRGEVKAVFKPGLPGQALGDYVEIL
Chains
Chain FB (auth Bf)
Domains
Sequence conservation
Molecule details ›

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Large ribosomal subunit protein eL43
Chain: Bg
Length: 86 amino acids
Theoretical weight: 9.24 KDa
Source organism: Thermococcus kodakarensis
UniProt:
  • Canonical: Q5JDM6 (Residues: 1-86; Coverage: 100%)
Gene names: TK0615, rpl37ae
Pfam: Ribosomal L37ae protein family
InterPro:
Large ribosomal subunit protein eL43 in PDB entry 6skg, assembly 1, front view.
Large ribosomal subunit protein eL43 in PDB entry 6skg, assembly 1, side view.
Large ribosomal subunit protein eL43 in PDB entry 6skg, assembly 1, top view.
PDBe-KB: UniProt Coverage View: Q5JDM6  
1861020304050607080
 
20406080MGRTTKVGSAGRFGPRYGLKIRRRVAAVEARMKQKHVCPVCGRKAVRRISTGIWQCQKCGATFAGGAYLPTTPAGKVAKRVTASKA
UniProt
Q5JDM6
Chains
Domains
Ligand binding sites
Sequence conservation
Molecule details ›

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Large ribosomal subunit protein eL37
Chain: Bh
Length: 63 amino acids
Theoretical weight: 7.47 KDa
Source organism: Thermococcus kodakarensis
UniProt:
  • Canonical: Q5JIE1 (Residues: 1-63; Coverage: 100%)
Gene names: TK0975, rpl37e
Pfam: Ribosomal protein L37e
InterPro:
Large ribosomal subunit protein eL37 in PDB entry 6skg, assembly 1, front view.
Large ribosomal subunit protein eL37 in PDB entry 6skg, assembly 1, side view.
Large ribosomal subunit protein eL37 in PDB entry 6skg, assembly 1, top view.
PDBe-KB: UniProt Coverage View: Q5JIE1  
16351015202530354045505560
 
204060MGAGTAPKGKRNRTPTHIRCRRCGRRAFNVKKGYCAACGFGRSRRMRKYSWSHKWRKKRNLSY
UniProt
Q5JIE1
Chains
Domains
Ligand binding sites
Sequence conservation
Molecule details ›

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Large ribosomal subunit protein eL39
Chain: Bi
Length: 51 amino acids
Theoretical weight: 6.26 KDa
Source organism: Thermococcus kodakarensis
UniProt:
  • Canonical: Q5JGT6 (Residues: 1-51; Coverage: 100%)
Gene names: TK1319, rpl39e
Pfam: Ribosomal L39 protein
InterPro:
Large ribosomal subunit protein eL39 in PDB entry 6skg, assembly 1, front view.
Large ribosomal subunit protein eL39 in PDB entry 6skg, assembly 1, side view.
Large ribosomal subunit protein eL39 in PDB entry 6skg, assembly 1, top view.
PDBe-KB: UniProt Coverage View: Q5JGT6  
1515101520253035404550
 
2040MARNKPFAKKLRLAKAAKQNRRVPVWVIVKTNRKVITHPKRRHWRRTKLKE
UniProt
Q5JGT6
Chains
Domains
Sequence conservation
Molecule details ›

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Large ribosomal subunit protein eL40
Chain: Bj
Length: 51 amino acids
Theoretical weight: 5.78 KDa
Source organism: Thermococcus kodakarensis
UniProt:
  • Canonical: Q5JJD3 (Residues: 1-51; Coverage: 100%)
Gene names: TK1495, rpl40e
InterPro:
Large ribosomal subunit protein eL40 in PDB entry 6skg, assembly 1, front view.
Large ribosomal subunit protein eL40 in PDB entry 6skg, assembly 1, side view.
Large ribosomal subunit protein eL40 in PDB entry 6skg, assembly 1, top view.
PDBe-KB: UniProt Coverage View: Q5JJD3  
1515101520253035404550
 
2040MARFPEAEARIFRKLVCMRCGATNPWGAKKCRKCGYKGLRPKAREPRGGGR
UniProt
Q5JJD3
Chains
Domains
Ligand binding sites
Sequence conservation
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Small ribosomal subunit protein eS32
Chain: Bk
Length: 37 amino acids
Theoretical weight: 5.05 KDa
Source organism: Thermococcus kodakarensis
UniProt:
  • Canonical: Q5JEV0 (Residues: 1-37; Coverage: 100%)
Gene names: TK1915, rpl41e
LSU ribosomal protein L41E in PDB entry 6skg, assembly 1, front view.
LSU ribosomal protein L41E in PDB entry 6skg, assembly 1, side view.
LSU ribosomal protein L41E in PDB entry 6skg, assembly 1, top view.
PDBe-KB: UniProt Coverage View: Q5JEV0  
1375101520253035
 
102030MKRRPRKWKKKGRMRWKWIKKRIRRLKRQRRKERGLI
UniProt
Q5JEV0
Chains
Sequence conservation
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Large ribosomal subunit protein eL42
Chain: Bl
Length: 94 amino acids
Theoretical weight: 11.2 KDa
Source organism: Thermococcus kodakarensis
UniProt:
  • Canonical: Q5JE51 (Residues: 1-94; Coverage: 100%)
Gene names: TK1098, rpl44e
Pfam: Ribosomal protein L44
InterPro:
Large ribosomal subunit protein eL42 in PDB entry 6skg, assembly 1, front view.
Large ribosomal subunit protein eL42 in PDB entry 6skg, assembly 1, side view.
Large ribosomal subunit protein eL42 in PDB entry 6skg, assembly 1, top view.
PDBe-KB: UniProt Coverage View: Q5JE51  
194102030405060708090
 
20406080MKYPKQIRTYCPFCKRHTIHKVEKVKKRPRSELSAGQRRFRRKLKGYTGFPRPNPAGREKPVKKLDLRFRCTVCGKAHTRGQGFRVKKFELVEV
UniProt
Q5JE51
Chains
Domains
Ligand binding sites
Sequence conservation
Molecule details ›

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Zinc-finger protein TK0143
Chain: Bo
Length: 47 amino acids
Theoretical weight: 5.49 KDa
Source organism: Thermococcus kodakarensis
UniProt:
  • Canonical: Q5JFH3 (Residues: 1-47; Coverage: 100%)
Gene name: TK0143
Pfam: Zinc finger, C2H2 type
InterPro:
C2H2-type domain-containing protein in PDB entry 6skg, assembly 1, front view.
C2H2-type domain-containing protein in PDB entry 6skg, assembly 1, side view.
C2H2-type domain-containing protein in PDB entry 6skg, assembly 1, top view.
PDBe-KB: UniProt Coverage View: Q5JFH3  
14751015202530354045
 
2040MAVLKAIKIEDRDGEILFRCPRCGMVFRSAKAYTRHVNKAHGHLFRK
UniProt
Q5JFH3
Chains
Domains
Ligand binding sites
Sequence conservation
Molecule details ›

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Ribosome maturation protein SDO1 homolog
Chain: Bp
Length: 236 amino acids
Theoretical weight: 26.87 KDa
Source organism: Thermococcus kodakarensis
UniProt:
  • Canonical: Q5JIV0 (Residues: 1-236; Coverage: 100%)
Gene name: TK1636
Pfam:
InterPro:
Ribosome maturation protein SDO1 homolog in PDB entry 6skg, assembly 1, front view.
Ribosome maturation protein SDO1 homolog in PDB entry 6skg, assembly 1, side view.
Ribosome maturation protein SDO1 homolog in PDB entry 6skg, assembly 1, top view.
PDBe-KB: UniProt Coverage View: Q5JIV0  
123620406080100120140160180200220
 
100200
UniProt
Q5JIV0
Chains
Domains
Sequence conservation
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Unknown ribosomal protein
Chain: Bq
Length: 34 amino acids
Theoretical weight: 2.43 KDa
Source organism: Thermococcus kodakarensis
InterPro: Antifreeze protein, type I
Unknown ribosomal protein in PDB entry 6skg, assembly 1, front view.
Unknown ribosomal protein in PDB entry 6skg, assembly 1, side view.
Unknown ribosomal protein in PDB entry 6skg, assembly 1, top view.
13451015202530
 
102030AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Chains
Chain QB (auth Bq)
Domains
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RNA chain Aa
Name: 16S ribosomal RNA
Representative chains: Aa
Length: 1498 nucleotides
Theoretical weight: 487.39 KDa
16S ribosomal RNA in PDB entry 6skg, assembly 1, front view.
16S ribosomal RNA in PDB entry 6skg, assembly 1, side view.
16S ribosomal RNA in PDB entry 6skg, assembly 1, top view.
114982004006008001,0001,2001,400
 
5001000
Chains
Chain A (auth Aa)
Rfam
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RNA chain BA
Name: 23S ribosomal RNA
Representative chains: BA
Length: 3037 nucleotides
Theoretical weight: 987.98 KDa
23S ribosomal RNA in PDB entry 6skg, assembly 1, front view.
23S ribosomal RNA in PDB entry 6skg, assembly 1, side view.
23S ribosomal RNA in PDB entry 6skg, assembly 1, top view.
130372004006008001,0001,2001,4001,6001,8002,0002,2002,4002,6002,8003,000
 
100020003000
Chains
Chain AA (auth BA)
Rfam
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RNA chain BB
Name: 5S ribosomal RNA
Representative chains: BB
Length: 126 nucleotides
Theoretical weight: 40.74 KDa
5S ribosomal RNA in PDB entry 6skg, assembly 1, front view.
5S ribosomal RNA in PDB entry 6skg, assembly 1, side view.
5S ribosomal RNA in PDB entry 6skg, assembly 1, top view.
1126102030405060708090100110120
 
50100
Chains
Chain BA (auth BB)
Rfam
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