PDB 6ztm structure summary ‹ Protein Data Bank in Europe (PDBe)

Function and Biology Details

Reaction catalysed:

Nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1)

Biochemical function:

structural constituent of ribosome

Biological process:

translation

Cellular component:

cytoplasm

Sequence domains:

216 more domains

Structure analysis Details

Assembly composition:

hetero 60-mer (preferred)

PDBe Complex ID:

PDB-CPX-199530 (preferred)

Entry contents:

51 distinct polypeptide molecules
2 distinct DNA molecules
6 distinct RNA molecules

Macromolecules (59 distinct):

Small ribosomal subunit protein uS2 Chain: AB

Molecule details ›

Chain: AB
Length: 241 amino acids
Theoretical weight: 26.78 KDa
Source organism: Escherichia coli
UniProt:

Canonical: P0A7V0 (Residues: 1-241; Coverage: 100%)

Gene names: JW0164, b0169, rpsB
Sequence domains: Ribosomal protein S2

Small ribosomal subunit protein uS3 Chain: AC

Molecule details ›

Chain: AC
Length: 233 amino acids
Theoretical weight: 26.03 KDa
Source organism: Escherichia coli
UniProt:

Canonical: P0A7V3 (Residues: 1-233; Coverage: 100%)

Gene names: JW3276, b3314, rpsC
Sequence domains:

Small ribosomal subunit protein uS4 Chain: AD

Molecule details ›

Chain: AD
Length: 206 amino acids
Theoretical weight: 23.51 KDa
Source organism: Escherichia coli
UniProt:

Canonical: P0A7V8 (Residues: 1-206; Coverage: 100%)

Gene names: JW3258, b3296, ramA, rpsD
Sequence domains:

Small ribosomal subunit protein uS5 Chain: AE

Molecule details ›

Chain: AE
Length: 167 amino acids
Theoretical weight: 17.62 KDa
Source organism: Escherichia coli
UniProt:

Canonical: P0A7W1 (Residues: 1-167; Coverage: 100%)

Gene names: JW3265, b3303, rpsE, spc
Sequence domains:

Small ribosomal subunit protein bS6 Chain: AF

Molecule details ›

Chain: AF
Length: 131 amino acids
Theoretical weight: 15.2 KDa
Source organism: Escherichia coli
UniProt:

Canonical: P02358 (Residues: 1-131; Coverage: 97%)

Gene names: JW4158, b4200, rpsF
Sequence domains: Ribosomal protein S6

Small ribosomal subunit protein uS7 Chain: AG

Molecule details ›

Chain: AG
Length: 156 amino acids
Theoretical weight: 17.64 KDa
Source organism: Escherichia coli
UniProt:

Canonical: P02359 (Residues: 1-156; Coverage: 87%)

Gene names: JW3303, b3341, rpsG
Sequence domains: Ribosomal protein S7p/S5e

Small ribosomal subunit protein uS8 Chain: AH

Molecule details ›

Chain: AH
Length: 130 amino acids
Theoretical weight: 14.15 KDa
Source organism: Escherichia coli
UniProt:

Canonical: P0A7W7 (Residues: 1-130; Coverage: 100%)

Gene names: JW3268, b3306, rpsH
Sequence domains: Ribosomal protein S8

Small ribosomal subunit protein uS9 Chain: AI

Molecule details ›

Chain: AI
Length: 130 amino acids
Theoretical weight: 14.89 KDa
Source organism: Escherichia coli
UniProt:

Canonical: P0A7X3 (Residues: 1-130; Coverage: 100%)

Gene names: JW3199, b3230, rpsI
Sequence domains: Ribosomal protein S9/S16

Small ribosomal subunit protein uS10 Chain: AJ

Molecule details ›

Chain: AJ
Length: 103 amino acids
Theoretical weight: 11.76 KDa
Source organism: Escherichia coli
UniProt:

Canonical: P0A7R5 (Residues: 1-103; Coverage: 100%)

Gene names: JW3283, b3321, nusE, rpsJ
Sequence domains: Ribosomal protein S10p/S20e

Small ribosomal subunit protein uS11 Chain: AK

Molecule details ›

Chain: AK
Length: 129 amino acids
Theoretical weight: 13.87 KDa
Source organism: Escherichia coli
UniProt:

Canonical: P0A7R9 (Residues: 1-129; Coverage: 100%)

Gene names: JW3259, b3297, rpsK
Sequence domains: Ribosomal protein S11

Small ribosomal subunit protein uS12 Chain: AL

Molecule details ›

Chain: AL
Length: 124 amino acids
Theoretical weight: 13.81 KDa
Source organism: Escherichia coli
UniProt:

Canonical: P0A7S3 (Residues: 1-124; Coverage: 100%)

Gene names: JW3304, b3342, rpsL, strA
Sequence domains: Ribosomal protein S12/S23

Small ribosomal subunit protein uS13 Chain: AM

Molecule details ›

Chain: AM
Length: 118 amino acids
Theoretical weight: 13.13 KDa
Source organism: Escherichia coli
UniProt:

Canonical: P0A7S9 (Residues: 1-118; Coverage: 100%)

Gene names: JW3260, b3298, rpsM
Sequence domains: Ribosomal protein S13/S18

Small ribosomal subunit protein uS14 Chain: AN

Molecule details ›

Chain: AN
Length: 101 amino acids
Theoretical weight: 11.61 KDa
Source organism: Escherichia coli
UniProt:

Canonical: P0AG59 (Residues: 1-101; Coverage: 100%)

Gene names: JW3269, b3307, rpsN
Sequence domains: Ribosomal protein S14p/S29e

Small ribosomal subunit protein uS15 Chain: AO

Molecule details ›

Chain: AO
Length: 89 amino acids
Theoretical weight: 10.29 KDa
Source organism: Escherichia coli
UniProt:

Canonical: P0ADZ4 (Residues: 1-89; Coverage: 100%)

Gene names: JW3134, b3165, rpsO, secC
Sequence domains: Ribosomal protein S15

Small ribosomal subunit protein bS16 Chain: AP

Molecule details ›

Chain: AP
Length: 82 amino acids
Theoretical weight: 9.21 KDa
Source organism: Escherichia coli
UniProt:

Canonical: P0A7T3 (Residues: 1-82; Coverage: 100%)

Gene names: JW2590, b2609, rpsP
Sequence domains: Ribosomal protein S16

Small ribosomal subunit protein uS17 Chain: AQ

Molecule details ›

Chain: AQ
Length: 84 amino acids
Theoretical weight: 9.72 KDa
Source organism: Escherichia coli
UniProt:

Canonical: P0AG63 (Residues: 1-84; Coverage: 100%)

Gene names: JW3273, b3311, neaA, rpsQ
Sequence domains: Ribosomal protein S17

Small ribosomal subunit protein bS18 Chain: AR

Molecule details ›

Chain: AR
Length: 75 amino acids
Theoretical weight: 9.01 KDa
Source organism: Escherichia coli
UniProt:

Canonical: P0A7T7 (Residues: 1-75; Coverage: 100%)

Gene names: JW4160, b4202, rpsR
Sequence domains: Ribosomal protein S18

Small ribosomal subunit protein uS19 Chain: AS

Molecule details ›

Chain: AS
Length: 92 amino acids
Theoretical weight: 10.46 KDa
Source organism: Escherichia coli
UniProt:

Canonical: P0A7U3 (Residues: 1-92; Coverage: 100%)

Gene names: JW3278, b3316, rpsS
Sequence domains: Ribosomal protein S19

Small ribosomal subunit protein bS20 Chain: AT

Molecule details ›

Chain: AT
Length: 87 amino acids
Theoretical weight: 9.71 KDa
Source organism: Escherichia coli
UniProt:

Canonical: P0A7U7 (Residues: 1-87; Coverage: 100%)

Gene names: JW0022, b0023, rpsT
Sequence domains: Ribosomal protein S20

Small ribosomal subunit protein bS21 Chain: AU

Molecule details ›

Chain: AU
Length: 71 amino acids
Theoretical weight: 8.52 KDa
Source organism: Escherichia coli
UniProt:

Canonical: P68679 (Residues: 1-71; Coverage: 100%)

Gene names: JW3037, b3065, rpsU
Sequence domains: Ribosomal protein S21

Large ribosomal subunit protein uL2 Chain: BC

Molecule details ›

Chain: BC
Length: 273 amino acids
Theoretical weight: 29.92 KDa
Source organism: Escherichia coli
UniProt:

Canonical: P60422 (Residues: 1-273; Coverage: 100%)

Gene names: JW3279, b3317, rplB
Sequence domains:

Large ribosomal subunit protein uL3 Chain: BD

Molecule details ›

Chain: BD
Length: 209 amino acids
Theoretical weight: 22.29 KDa
Source organism: Escherichia coli
UniProt:

Canonical: P60438 (Residues: 1-209; Coverage: 100%)

Gene names: JW3282, b3320, rplC
Sequence domains: Ribosomal protein L3

Large ribosomal subunit protein uL4 Chain: BE

Molecule details ›

Chain: BE
Length: 201 amino acids
Theoretical weight: 22.12 KDa
Source organism: Escherichia coli
UniProt:

Canonical: P60723 (Residues: 1-201; Coverage: 100%)

Gene names: JW3281, b3319, eryA, rplD
Sequence domains: Ribosomal protein L4/L1 family

Large ribosomal subunit protein uL5 Chain: BF

Molecule details ›

Chain: BF
Length: 179 amino acids
Theoretical weight: 20.33 KDa
Source organism: Escherichia coli
UniProt:

Canonical: P62399 (Residues: 1-179; Coverage: 100%)

Gene names: JW3270, b3308, rplE
Sequence domains:

Large ribosomal subunit protein uL6 Chain: BG

Molecule details ›

Chain: BG
Length: 177 amino acids
Theoretical weight: 18.93 KDa
Source organism: Escherichia coli
UniProt:

Canonical: P0AG55 (Residues: 1-177; Coverage: 100%)

Gene names: JW3267, b3305, rplF
Sequence domains: Ribosomal protein L6

Large ribosomal subunit protein bL9 Chain: BH

Molecule details ›

Chain: BH
Length: 149 amino acids
Theoretical weight: 15.79 KDa
Source organism: Escherichia coli
UniProt:

Canonical: P0A7R1 (Residues: 1-149; Coverage: 100%)

Gene names: JW4161, b4203, rplI
Sequence domains:

Large ribosomal subunit protein uL13 Chain: BK

Molecule details ›

Chain: BK
Length: 142 amino acids
Theoretical weight: 16.05 KDa
Source organism: Escherichia coli
UniProt:

Canonical: P0AA10 (Residues: 1-142; Coverage: 100%)

Gene names: JW3200, b3231, rplM
Sequence domains: Ribosomal protein L13

Large ribosomal subunit protein uL14 Chain: BL

Molecule details ›

Chain: BL
Length: 123 amino acids
Theoretical weight: 13.57 KDa
Source organism: Escherichia coli
UniProt:

Canonical: P0ADY3 (Residues: 1-123; Coverage: 100%)

Gene names: JW3272, b3310, rplN
Sequence domains: Ribosomal protein L14p/L23e

Large ribosomal subunit protein uL15 Chain: BM

Molecule details ›

Chain: BM
Length: 144 amino acids
Theoretical weight: 14.99 KDa
Source organism: Escherichia coli
UniProt:

Canonical: P02413 (Residues: 1-144; Coverage: 100%)

Gene names: JW3263, b3301, rplO
Sequence domains: Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A

Large ribosomal subunit protein uL16 Chain: BN

Molecule details ›

Chain: BN
Length: 136 amino acids
Theoretical weight: 15.33 KDa
Source organism: Escherichia coli
UniProt:

Canonical: P0ADY7 (Residues: 1-136; Coverage: 100%)

Gene names: JW3275, b3313, rplP
Sequence domains: Ribosomal protein L16p/L10e

Large ribosomal subunit protein bL17 Chain: BO

Molecule details ›

Chain: BO
Length: 127 amino acids
Theoretical weight: 14.39 KDa
Source organism: Escherichia coli
UniProt:

Canonical: P0AG44 (Residues: 1-127; Coverage: 100%)

Gene names: JW3256, b3294, rplQ
Sequence domains: Ribosomal protein L17

Large ribosomal subunit protein uL18 Chain: BP

Molecule details ›

Chain: BP
Length: 117 amino acids
Theoretical weight: 12.79 KDa
Source organism: Escherichia coli
UniProt:

Canonical: P0C018 (Residues: 1-117; Coverage: 100%)

Gene names: JW3266, b3304, rplR
Sequence domains: Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast

Large ribosomal subunit protein bL19 Chain: BQ

Molecule details ›

Chain: BQ
Length: 115 amino acids
Theoretical weight: 13.16 KDa
Source organism: Escherichia coli
UniProt:

Canonical: P0A7K6 (Residues: 1-115; Coverage: 100%)

Gene names: JW2587, b2606, rplS
Sequence domains: Ribosomal protein L19

Large ribosomal subunit protein bL20 Chain: BR

Molecule details ›

Chain: BR
Length: 118 amino acids
Theoretical weight: 13.53 KDa
Source organism: Escherichia coli
UniProt:

Canonical: P0A7L3 (Residues: 1-118; Coverage: 100%)

Gene names: JW1706, b1716, pdzA, rplT
Sequence domains: Ribosomal protein L20

Large ribosomal subunit protein bL21 Chain: BS

Molecule details ›

Chain: BS
Length: 103 amino acids
Theoretical weight: 11.59 KDa
Source organism: Escherichia coli
UniProt:

Canonical: P0AG48 (Residues: 1-103; Coverage: 100%)

Gene names: JW3153, b3186, rplU
Sequence domains: Ribosomal prokaryotic L21 protein

Large ribosomal subunit protein uL22 Chain: BT

Molecule details ›

Chain: BT
Length: 110 amino acids
Theoretical weight: 12.25 KDa
Source organism: Escherichia coli
UniProt:

Canonical: P61175 (Residues: 1-110; Coverage: 100%)

Gene names: JW3277, b3315, eryB, rplV
Sequence domains: Ribosomal protein L22p/L17e

Large ribosomal subunit protein uL23 Chain: BU

Molecule details ›

Chain: BU
Length: 100 amino acids
Theoretical weight: 11.22 KDa
Source organism: Escherichia coli
UniProt:

Canonical: P0ADZ0 (Residues: 1-100; Coverage: 100%)

Gene names: JW3280, b3318, rplW
Sequence domains: Ribosomal protein L23

Large ribosomal subunit protein uL24 Chain: BV

Molecule details ›

Chain: BV
Length: 104 amino acids
Theoretical weight: 11.34 KDa
Source organism: Escherichia coli
UniProt:

Canonical: P60624 (Residues: 1-104; Coverage: 100%)

Gene names: JW3271, b3309, rplX
Sequence domains:

Large ribosomal subunit protein bL25 Chain: BW

Molecule details ›

Chain: BW
Length: 94 amino acids
Theoretical weight: 10.71 KDa
Source organism: Escherichia coli
UniProt:

Canonical: P68919 (Residues: 1-94; Coverage: 100%)

Gene names: JW2173, b2185, rplY
Sequence domains: Ribosomal L25p family

Large ribosomal subunit protein bL27 Chain: BX

Molecule details ›

Chain: BX
Length: 85 amino acids
Theoretical weight: 9.15 KDa
Source organism: Escherichia coli
UniProt:

Canonical: P0A7L8 (Residues: 1-85; Coverage: 100%)

Gene names: JW3152, b3185, rpmA
Sequence domains: Ribosomal L27 protein

Large ribosomal subunit protein bL28 Chain: BY

Molecule details ›

Chain: BY
Length: 78 amino acids
Theoretical weight: 9.03 KDa
Source organism: Escherichia coli
UniProt:

Canonical: P0A7M2 (Residues: 1-78; Coverage: 100%)

Gene names: JW3612, b3637, rpmB
Sequence domains: Ribosomal L28 family

Large ribosomal subunit protein uL29 Chain: BZ

Molecule details ›

Chain: BZ
Length: 63 amino acids
Theoretical weight: 7.29 KDa
Source organism: Escherichia coli
UniProt:

Canonical: P0A7M6 (Residues: 1-63; Coverage: 100%)

Gene names: JW3274, b3312, rpmC
Sequence domains: Ribosomal L29 protein

Large ribosomal subunit protein uL30 Chain: B1

Molecule details ›

Chain: B1
Length: 59 amino acids
Theoretical weight: 6.55 KDa
Source organism: Escherichia coli
UniProt:

Canonical: P0AG51 (Residues: 1-59; Coverage: 100%)

Gene names: JW3264, b3302, rpmD
Sequence domains: Ribosomal protein L30p/L7e

Large ribosomal subunit protein bL32 Chain: B2

Molecule details ›

Chain: B2
Length: 57 amino acids
Theoretical weight: 6.46 KDa
Source organism: Escherichia coli
UniProt:

Canonical: P0A7N4 (Residues: 1-57; Coverage: 100%)

Gene names: JW1075, b1089, rpmF
Sequence domains: Ribosomal L32p protein family

Large ribosomal subunit protein bL33 Chain: B3

Molecule details ›

Chain: B3
Length: 55 amino acids
Theoretical weight: 6.39 KDa
Source organism: Escherichia coli
UniProt:

Canonical: P0A7N9 (Residues: 1-55; Coverage: 100%)

Gene names: JW3611, b3636, rpmG
Sequence domains: Ribosomal protein L33

Large ribosomal subunit protein bL34 Chain: B4

Molecule details ›

Chain: B4
Length: 46 amino acids
Theoretical weight: 5.4 KDa
Source organism: Escherichia coli
UniProt:

Canonical: P0A7P5 (Residues: 1-46; Coverage: 100%)

Gene names: JW3680, b3703, rimA, rpmH, ssaF
Sequence domains: Ribosomal protein L34

Large ribosomal subunit protein bL35 Chain: B5

Molecule details ›

Chain: B5
Length: 65 amino acids
Theoretical weight: 7.31 KDa
Source organism: Escherichia coli
UniProt:

Canonical: P0A7Q1 (Residues: 1-65; Coverage: 100%)

Gene names: JW1707, b1717, rpmI
Sequence domains: Ribosomal protein L35

Large ribosomal subunit protein bL36A Chain: B6

Molecule details ›

Chain: B6
Length: 50 amino acids
Theoretical weight: 5.72 KDa
Source organism: Escherichia coli
UniProt:

Canonical: P0A7Q6 (Residues: 1-38; Coverage: 100%)

Gene names: JW3261, b3299, rpmJ
Sequence domains: Ribosomal protein L36

DNA-directed RNA polymerase subunit alpha Chains: CA, CB

Molecule details ›

Chains: CA, CB
Length: 329 amino acids
Theoretical weight: 36.56 KDa
Source organism: Escherichia coli
Expression system: Escherichia coli
UniProt:

Canonical: P0A7Z4 (Residues: 1-329; Coverage: 100%)

Gene names: JW3257, b3295, pez, phs, rpoA, sez
Sequence domains:

DNA-directed RNA polymerase subunit beta Chain: CC

Molecule details ›

Chain: CC
Length: 1342 amino acids
Theoretical weight: 150.82 KDa
Source organism: Escherichia coli
Expression system: Escherichia coli
UniProt:

Canonical: P0A8V2 (Residues: 1-1342; Coverage: 100%)

Gene names: JW3950, b3987, groN, nitB, rif, ron, rpoB, stl, stv, tabD
Sequence domains:

DNA-directed RNA polymerase subunit beta' Chain: CD

Molecule details ›

Chain: CD
Length: 1407 amino acids
Theoretical weight: 155.37 KDa
Source organism: Escherichia coli
Expression system: Escherichia coli
UniProt: