› 7edl

X-ray diffraction
2.6Å resolution

Crystal structure of the bacterial ribosomal decoding site in complex with G418 and Hg(II)

Released:
DOI: 10.2210/pdb7edl/pdb
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PDB entry 7edl coloured by chain, front view.
PDB entry 7edl coloured by chain, side view.
PDB entry 7edl coloured by chain, top view.
Source organism: synthetic construct
Entry authors: Kondo J, Suzuki C

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-197224 (preferred)
Entry contents:
1 distinct RNA molecule
Macromolecule:
RNA (5'-R(P*UP*GP*CP*GP*UP*CP*AP*CP*GP*CP*CP*GP*GP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3') Chains: A, B
Molecule details ›
Chains: A, B
Length: 23 nucleotides
Theoretical weight: 7.37 KDa
Source organism: synthetic construct
Expression system: Not provided

Ligands and Environments

2 bound ligands:
Ligand GET 2 x GET
Ligand HG 2 x HG
No modified residues

Experiments and Validation Details

wwPDB Validation report is not available for this entry.
X-ray source: PHOTON FACTORY BEAMLINE BL-1A
Spacegroup: P21212
Unit cell:
a: 31.64Å b: 97.301Å c: 47.06Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.19 0.186 0.222
Expression system: Not provided

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