› 7tem

X-ray diffraction
1.65Å resolution

Crystal Structure of the Putative Exported Protein YPO2471 from Yersinia pestis

Released:
DOI: 10.2210/pdb7tem/pdb
PDB entry 7tem coloured by chain, front view.
PDB entry 7tem coloured by chain, side view.
PDB entry 7tem coloured by chain, top view.
Source organism: Yersinia pestis CO92
Entry authors: Kim Y, Chhor G, Endres M, Babnigg G, Schneewind O, Joachimiak A, Center for Structural Genomics of Infectious Diseases (CSGID)

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-101585 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecules (2 distinct):
Exported protein Chains: A, B
Molecule details ›
Chains: A, B
Length: 427 amino acids
Theoretical weight: 48.81 KDa
Source organism: Yersinia pestis CO92
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: A0A5P8YGV9 (Residues: 1-424; Coverage: 100%)
Gene name: YPO2471

Ligands and Environments

Carbohydrate polymer : NEW Components: GLC, FRU
Ligand GLC 2 x GLC
Ligand FRU 2 x FRU
4 bound ligands:
Ligand CL 2 x CL
Ligand EDO 6 x EDO
Ligand ACY 1 x ACY
Ligand GOL 1 x GOL
1 modified residue:
Ligand MSE 20 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 19-BM
Spacegroup: P212121
Unit cell:
a: 54.774Å b: 90.016Å c: 181.301Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.16 0.159 0.189
Expression system: Escherichia coli BL21(DE3)

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