8f8y

X-ray diffraction
3.06Å resolution

PHF2 (PHD+JMJ) in Complex with VRK1 N-Terminal Peptide

Released:

Function and Biology Details

Reaction catalysed:
ATP + a protein = ADP + a phosphoprotein
Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
hetero dimer (preferred)
PDBe Complex ID:
PDB-CPX-130855 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
Lysine-specific demethylase PHF2 Chains: A, B
Molecule details ›
Chains: A, B
Length: 455 amino acids
Theoretical weight: 51.83 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: O75151 (Residues: 1-451; Coverage: 41%)
Gene names: CENP-35, KIAA0662, PHF2
Sequence domains:
Serine/threonine-protein kinase VRK1 Chains: E, F
Molecule details ›
Chains: E, F
Length: 12 amino acids
Theoretical weight: 1.31 KDa
Source organism: Homo sapiens
Expression system: Not provided
UniProt:
  • Canonical: Q99986 (Residues: 2-13; Coverage: 3%)
Gene name: VRK1

Ligands and Environments

3 bound ligands:
1 modified residue:

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 22-ID
Spacegroup: P21
Unit cell:
a: 74.406Å b: 84.065Å c: 105.215Å
α: 90° β: 103.99° γ: 90°
R-values:
R R work R free
0.197 0.194 0.249
Expression systems:
  • Escherichia coli BL21(DE3)
  • Not provided