1 bound ligand:
TFA 101(A)
Environment details ›
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Jmol JavaScript applet _PDBE_JMOL__6818552468748966__ initializing
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setting document base to "https://www.ebi.ac.uk/pdbe/entry/pdb/8t89/ligands"
(C) 2012 Jmol Development
Jmol Version: 14.3.6_2014.08.17b 2014-08-17 17:24
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s://www.ebi.ac.uk/pdbe/software/jmol-future/jsmol/j2s/core/corescript.z.js
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FileManager.getAtomSetCollectionFromFile(https://www.ebi.ac.uk/pdbe/entry-files/download/8t89.cif)
FileManager opening 1 https://www.ebi.ac.uk/pdbe/entry-files/download/8t89.cif
The Resolver thinks MMCif
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TITLE: Racemic Peptides from Amyloid beta and Amylin Form Rippled beta-Sheets Rather Than Pleated beta-Sheets.
Setting space group name to HM:P -1
found biomolecule 1: A,B,C
found biomolecule 1: A,B,C
found biomolecule 1: A,B,C
found biomolecule 1: A,B,C
found biomolecule 1: A,B,C
found biomolecule 1: A,B,C
assembly operator 1 x,y,z
assembly operator 2 x+1,y,z
assembly operator 3 x-1,y,z
assembly operator 4 -x,-y+1,-z+1
assembly operator 5 -x-1,-y+1,-z+1
assembly operator 6 -x+1,-y+1,-z+1
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: doub
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: doub
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: doub
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: doub
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: doub
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: doub
unknown CIF bond order: sing
unknown CIF bond order: doub
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: doub
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: doub
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
s://www.ebi.ac.uk/pdbe/software/jmol-future/jsmol/j2s/core/coresym.z.js
Time for openFile(*8t89): 960 ms
reading 119 atoms
ModelSet: haveSymmetry:false haveUnitcells:true haveFractionalCoord:false
1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.
model 1.1 alternative locations: AB
Default Van der Waals type for model set to Babel
119 atoms created
ModelSet: not autobonding; use forceAutobond=true to force automatic bond creation
Jmol 14.3.6_2014.08.17b 2014-08-17 17:24 DSSP analysis for model 1.1 - 8T89
W. Kabsch and C. Sander, Biopolymers, vol 22, 1983, pp 2577-2637
We thank Wolfgang Kabsch and Chris Sander for writing the DSSP software,
and we thank the CMBI for maintaining it to the extent that it was easy to
re-engineer for our purposes. At this point in time, we make no guarantee
that this code gives precisely the same analysis as the code available via license
from CMBI at http://swift.cmbi.ru.nl/gv/dssp
All bioshapes have been deleted and must be regenerated.
Note: This model contains alternative locations. Use 'CONFIGURATION 1' to be consistent with CMBI DSSP.
NOTE: Backbone amide hydrogen positions are present and will be ignored. Their positions will be approximated, as in standard DSSP analysis.
Use SET dsspCalculateHydrogenAlways FALSE to not use this approximation.
TITLE: Racemic Peptides from Amyloid beta and Amylin Form Rippled beta-Sheets Rather Than Pleated beta-Sheets.
found biomolecule 1: A,B,C
found biomolecule 1: A,B,C
found biomolecule 1: A,B,C
found biomolecule 1: A,B,C
found biomolecule 1: A,B,C
found biomolecule 1: A,B,C
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contact ID "hb" {environmentAtoms} hbond color TRANSLUCENT 0.2 purple;
0 function(c,b)
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19 function()
20 scriptWait
21 function(c,b,g,d,e,f)
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script ERROR: TypeError: Cannot read properties of null (reading 'length') J.shapesurface.Contact set set
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