EMBL-EBI: Interactions & Pathways - Reactome
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Date:
Tuesday 28 February 2017Venue:
University of Cambridge - Downing Site, Cambridge, CB2 3AR, United KingdomApplication opens:
Friday 16 December 2016Application deadline:
Monday 27 February 2017Participation:
First come, first servedContact:
Louisa BellisRegistration fee:
This course is free to University of Cambridge students, but charges will apply for other participants.Registration closed
Course Overview
This workshop will give an introduction to the Reactome pathway database website and analysis tools, using short presentations and practical hands-on exercises. The session will also explain where to learn more, get help, and how to become involved in adding more pathway information to Reactome.
Audience
This workshop is aimed at researchers who want to learn about pathways or identify pathways relevant to a set of molecules. No previous experience of bioinformatics is required, but an undergraduate level knolwedge of Biology would be an advantage.
Modules
- interactions-and-pathways
Learning outcomes
After this course you should be able to:
- Navigate the Reactome Pathway browser, search pathways and understand pathway diagrams
- Find proteins or compounds represented in Reactome
- Extend Reactome pathways with protein-protein or protein-compound interactions from relevant databases or with your own interactions data
- Map your own lists of genes, proteins, or compounds to Reactome pathways and identifying the pathways that are over-represented
- Visualise pathway expression levels using your own microarray or protein dataset
Programme
| Time | Topic | Trainer |
|---|---|---|
| Day 1 - Tuesday 28 February 2017 | ||
| 09:00 | Introduction to Reactome pathways database | Steve Jupe |
| Reactome practical | Steve Jupe | |
| The Reactome Functional Interaction Network | Steve Jupe | |
| 11:45 | Course Feedback and End of workshop | Steve Jupe |
In association with
How to apply
Registration is run by the University of Cambridge, please visit their training website for full details.
Application deadline
27 February 2017
Number of places
40 places
Organisers
Gabriella Rustici - University of Cambridge, UK
Sarah Morgan - EMBL-EBI, UK
Trainers
Steve Jupe - EMBL-EBI, UK