IHECRE00000928.7 LIVE JSON
| Type | Single donor |
| Status | Complete |
| Project | NIH Roadmap Epigenomics |
| Description | REMC Epigenome (Class 2) for Ovary using donors/samples:STL002 |
| Previous versions | IHECRE00000928.6 IHECRE00000928.5 IHECRE00000928.4 IHECRE00000928.3 IHECRE00000928.2 IHECRE00000928.1 |
Metadata
| Disease ontology curie | ncim:C115222 |
| Biomaterial type | Primary Tissue |
| Donor id | ENCDO424HVB |
| Disease ontology uri | https://nciterms.nci.nih.gov/ncitbrowser/ConceptReport.jsp?dictionary=NCI_Thesaurus&code=C115222 |
| Donor life stage | adult |
| Donor ethnicity | Caucasian |
| Donor sex | Female |
| Donor age unit | year |
| Biological replicates | ENCBS341OKA |
| Tissue type | ovary |
| Taxon id | 9606 |
| Species | Homo sapiens |
| Disease | Bipolar disorder and iron deficiency |
| Sample ontology uri | http://purl.obolibrary.org/obo/UBERON_0000992 |
| Donor age | 30 |
| Donor health status ontology uri | https://nciterms.nci.nih.gov/ncitbrowser/ConceptReport.jsp?dictionary=NCI_Thesaurus&code=C115222 |
| Collection method | unknown |
| Donor health status ontology curie | ncim:C115222 |
| Treatment | NA |
| Sample ontology curie | uberon:0000992 |
| Tissue depot | ovary |
| Donor health status | Bipolar disorder and iron deficiency |
| Biomaterial provider | Shin Lin at Washington University |
Raw data
| Assay Type | Experiment Type | Archive | Primary ID | Secondary ID | URL |
|---|---|---|---|---|---|
| RNA-Seq | mRNA-Seq | ENCODE | ENCSR725TPW | None | https://www.encodeproject.org/experiments/ENCSR725TPW |
| Bisulfite-Seq | DNA Methylation | ENCODE | ENCSR417YFD | None | https://www.encodeproject.org/experiments/ENCSR417YFD |
| ChIP-Seq | Histone H3K4me3 | ENCODE | ENCSR139TLA | None | https://www.encodeproject.org/experiments/ENCSR139TLA |
| ChIP-Seq | ChIP-Seq Input | ENCODE | ENCSR674QIU | None | https://www.encodeproject.org/experiments/ENCSR674QIU |
| ChIP-Seq | Histone H3K27ac | ENCODE | ENCSR268JQE | None | https://www.encodeproject.org/experiments/ENCSR268JQE |
| ChIP-Seq | Histone H3K9me3 | ENCODE | ENCSR956UFV | None | https://www.encodeproject.org/experiments/ENCSR956UFV |
| ChIP-Seq | Histone H3K36me3 | ENCODE | ENCSR659MYS | None | https://www.encodeproject.org/experiments/ENCSR659MYS |
| ChIP-Seq | Histone H3K4me1 | ENCODE | ENCSR113AFY | None | https://www.encodeproject.org/experiments/ENCSR113AFY |
| ChIP-Seq | Histone H3K27me3 | ENCODE | ENCSR037SNV | None | https://www.encodeproject.org/experiments/ENCSR037SNV |
| DNase-Hypersensitivity | Chromatin Accessibility | ENCODE | ENCSR712PYJ | None | https://www.encodeproject.org/experiments/ENCSR712PYJ |