IHECRE00000928.7 LIVE JSON
Type | Single donor |
Status | Complete |
Project | NIH Roadmap Epigenomics |
Description | REMC Epigenome (Class 2) for Ovary using donors/samples:STL002 |
Previous versions | IHECRE00000928.6 IHECRE00000928.5 IHECRE00000928.4 IHECRE00000928.3 IHECRE00000928.2 IHECRE00000928.1 |
Metadata
Disease ontology curie | ncim:C115222 |
Biomaterial type | Primary Tissue |
Donor id | ENCDO424HVB |
Disease ontology uri | https://nciterms.nci.nih.gov/ncitbrowser/ConceptReport.jsp?dictionary=NCI_Thesaurus&code=C115222 |
Donor life stage | adult |
Donor ethnicity | Caucasian |
Donor sex | Female |
Donor age unit | year |
Biological replicates | ENCBS341OKA |
Tissue type | ovary |
Taxon id | 9606 |
Species | Homo sapiens |
Disease | Bipolar disorder and iron deficiency |
Sample ontology uri | http://purl.obolibrary.org/obo/UBERON_0000992 |
Donor age | 30 |
Donor health status ontology uri | https://nciterms.nci.nih.gov/ncitbrowser/ConceptReport.jsp?dictionary=NCI_Thesaurus&code=C115222 |
Collection method | unknown |
Donor health status ontology curie | ncim:C115222 |
Treatment | NA |
Sample ontology curie | uberon:0000992 |
Tissue depot | ovary |
Donor health status | Bipolar disorder and iron deficiency |
Biomaterial provider | Shin Lin at Washington University |
Raw data
Assay Type | Experiment Type | Archive | Primary ID | Secondary ID | URL |
---|---|---|---|---|---|
RNA-Seq | mRNA-Seq | ENCODE | ENCSR725TPW | None | https://www.encodeproject.org/experiments/ENCSR725TPW |
Bisulfite-Seq | DNA Methylation | ENCODE | ENCSR417YFD | None | https://www.encodeproject.org/experiments/ENCSR417YFD |
ChIP-Seq | Histone H3K4me3 | ENCODE | ENCSR139TLA | None | https://www.encodeproject.org/experiments/ENCSR139TLA |
ChIP-Seq | ChIP-Seq Input | ENCODE | ENCSR674QIU | None | https://www.encodeproject.org/experiments/ENCSR674QIU |
ChIP-Seq | Histone H3K27ac | ENCODE | ENCSR268JQE | None | https://www.encodeproject.org/experiments/ENCSR268JQE |
ChIP-Seq | Histone H3K9me3 | ENCODE | ENCSR956UFV | None | https://www.encodeproject.org/experiments/ENCSR956UFV |
ChIP-Seq | Histone H3K36me3 | ENCODE | ENCSR659MYS | None | https://www.encodeproject.org/experiments/ENCSR659MYS |
ChIP-Seq | Histone H3K4me1 | ENCODE | ENCSR113AFY | None | https://www.encodeproject.org/experiments/ENCSR113AFY |
ChIP-Seq | Histone H3K27me3 | ENCODE | ENCSR037SNV | None | https://www.encodeproject.org/experiments/ENCSR037SNV |
DNase-Hypersensitivity | Chromatin Accessibility | ENCODE | ENCSR712PYJ | None | https://www.encodeproject.org/experiments/ENCSR712PYJ |