IHECRE00000949.6 LIVE JSON
| Type | Composite |
| Status | Complete |
| Project | NIH Roadmap Epigenomics |
| Description | REMC Epigenome (Class 2) for Fetal Intestine Small using donors/samples:H-24595; H-23769 |
| Previous versions | IHECRE00000949.5 IHECRE00000949.4 IHECRE00000949.3 IHECRE00000949.2 IHECRE00000949.1 |
Metadata
| Disease ontology curie | ncim:C115222 |
| Biomaterial type | Primary Tissue |
| Disease ontology uri | https://nciterms.nci.nih.gov/ncitbrowser/ConceptReport.jsp?dictionary=NCI_Thesaurus&code=C115222 |
| Donor life stage | embryonic |
| Donor ethnicity | NA |
| Donor sex | Male |
| Donor age unit | day |
| Biological replicates | NA |
| Tissue type | small intestine |
| Taxon id | 9606 |
| Species | Homo sapiens |
| Disease | NA |
| Sample ontology uri | http://purl.obolibrary.org/obo/UBERON_0002108 |
| Donor age | 108 |
| Donor health status ontology uri | https://nciterms.nci.nih.gov/ncitbrowser/ConceptReport.jsp?dictionary=NCI_Thesaurus&code=C115222 |
| Collection method | unknown |
| Donor health status ontology curie | ncim:C115222 |
| Treatment | NA |
| Sample ontology curie | uberon:0002108 |
| Tissue depot | small intestine |
| Donor health status | NA |
| Biomaterial provider | Ian Glass at Congenital Defects Lab, University of Washington |
Raw data
| Assay Type | Experiment Type | Archive | Primary ID | Secondary ID | URL |
|---|---|---|---|---|---|
| Bisulfite-Seq | DNA Methylation | ENCODE | ENCSR522UKJ | None | https://www.encodeproject.org/experiments/ENCSR522UKJ |
| RNA-Seq | mRNA-Seq | ENCODE | ENCSR482VRI | None | https://www.encodeproject.org/experiments/ENCSR482VRI |
| ChIP-Seq | ChIP-Seq Input | ENCODE | ENCSR541DBO | None | https://www.encodeproject.org/experiments/ENCSR541DBO |
| ChIP-Seq | Histone H3K4me1 | ENCODE | ENCSR330NKU | None | https://www.encodeproject.org/experiments/ENCSR330NKU |
| ChIP-Seq | Histone H3K27me3 | ENCODE | ENCSR859EIX | None | https://www.encodeproject.org/experiments/ENCSR859EIX |
| ChIP-Seq | Histone H3K36me3 | ENCODE | ENCSR205NEW | None | https://www.encodeproject.org/experiments/ENCSR205NEW |
| DNase-Hypersensitivity | Chromatin Accessibility | ENCODE | ENCSR945RWN | None | https://www.encodeproject.org/experiments/ENCSR945RWN |
| ChIP-Seq | Histone H3K9me3 | ENCODE | ENCSR773TWR | None | https://www.encodeproject.org/experiments/ENCSR773TWR |
| ChIP-Seq | Histone H3K27ac | ENCODE | ENCSR892XFG | None | https://www.encodeproject.org/experiments/ENCSR892XFG |
| ChIP-Seq | Histone H3K4me3 | ENCODE | ENCSR237QFJ | None | https://www.encodeproject.org/experiments/ENCSR237QFJ |