IHECRE00000969.7 LIVE JSON
| Type | Single donor |
| Status | Complete |
| Project | NIH Roadmap Epigenomics |
| Description | REMC Epigenome (Class 2) for Thymus using donors/samples:STL001 |
| Previous versions | IHECRE00000969.6 IHECRE00000969.5 IHECRE00000969.4 IHECRE00000969.3 IHECRE00000969.2 IHECRE00000969.1 |
Metadata
| Disease ontology curie | ncim:C115222 |
| Biomaterial type | Primary Tissue |
| Donor id | ENCDO478OMA |
| Disease ontology uri | https://nciterms.nci.nih.gov/ncitbrowser/ConceptReport.jsp?dictionary=NCI_Thesaurus&code=C115222 |
| Donor life stage | child |
| Donor ethnicity | NA |
| Donor sex | Male |
| Donor age unit | year |
| Biological replicates | ENCBS672KLQ |
| Tissue type | thymus |
| Taxon id | 9606 |
| Species | Homo sapiens |
| Disease | healthy |
| Sample ontology uri | http://purl.obolibrary.org/obo/UBERON_0002370 |
| Donor age | 3 |
| Donor health status ontology uri | https://nciterms.nci.nih.gov/ncitbrowser/ConceptReport.jsp?dictionary=NCI_Thesaurus&code=C115222 |
| Collection method | unknown |
| Donor health status ontology curie | ncim:C115222 |
| Treatment | NA |
| Sample ontology curie | uberon:0002370 |
| Tissue depot | thymus |
| Donor health status | healthy |
| Biomaterial provider | Shin Lin at Washington University |
Raw data
| Assay Type | Experiment Type | Archive | Primary ID | Secondary ID | URL |
|---|---|---|---|---|---|
| Bisulfite-Seq | DNA Methylation | ENCODE | ENCSR914REH | None | https://www.encodeproject.org/experiments/ENCSR914REH |
| RNA-Seq | mRNA-Seq | ENCODE | ENCSR775KCE | None | https://www.encodeproject.org/experiments/ENCSR775KCE |
| ChIP-Seq | Histone H3K9me3 | ENCODE | ENCSR298PMB | None | https://www.encodeproject.org/experiments/ENCSR298PMB |
| ChIP-Seq | Histone H3K36me3 | ENCODE | ENCSR923WPP | None | https://www.encodeproject.org/experiments/ENCSR923WPP |
| ChIP-Seq | Histone H3K27me3 | ENCODE | ENCSR952EID | None | https://www.encodeproject.org/experiments/ENCSR952EID |
| ChIP-Seq | Histone H3K4me1 | ENCODE | ENCSR762ZLM | None | https://www.encodeproject.org/experiments/ENCSR762ZLM |
| ChIP-Seq | ChIP-Seq Input | ENCODE | ENCSR687ZYY | None | https://www.encodeproject.org/experiments/ENCSR687ZYY |
| ChIP-Seq | Histone H3K4me3 | ENCODE | ENCSR738LBP | None | https://www.encodeproject.org/experiments/ENCSR738LBP |
| ChIP-Seq | Histone H3K27ac | ENCODE | ENCSR303IKJ | None | https://www.encodeproject.org/experiments/ENCSR303IKJ |