IHECRE00001027.7 LIVE JSON  


Type Composite
Status Complete
Project NIH Roadmap Epigenomics
Description REMC Epigenome (Class 2) for Psoas Muscle using donors/samples:STL001; STL003
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Metadata


Disease ontology curie ncim:C115222
Biomaterial type Primary Tissue
Disease ontology uri https://nciterms.nci.nih.gov/ncitbrowser/ConceptReport.jsp?dictionary=NCI_Thesaurus&code=C115222
Donor sex Male
Donor age unit year
Tissue type psoas muscle
Taxon id 9606
Species Homo sapiens
Sample ontology uri http://purl.obolibrary.org/obo/UBERON_0008450
Donor health status ontology uri https://nciterms.nci.nih.gov/ncitbrowser/ConceptReport.jsp?dictionary=NCI_Thesaurus&code=C115222
Collection method unknown
Donor health status ontology curie ncim:C115222
Treatment NA
Sample ontology curie uberon:0008450
Tissue depot psoas muscle
Biomaterial provider Shin Lin at Washington University

Raw data


Assay Type Experiment Type Archive Primary ID Secondary ID URL
RNA-Seq mRNA-Seq ENCODE ENCSR843HXR None https://www.encodeproject.org/experiments/ENCSR843HXR
RNA-Seq mRNA-Seq ENCODE ENCSR817TLH None https://www.encodeproject.org/experiments/ENCSR817TLH
Bisulfite-Seq DNA Methylation ENCODE ENCSR414XEF None https://www.encodeproject.org/experiments/ENCSR414XEF
Bisulfite-Seq DNA Methylation ENCODE ENCSR364ANL None https://www.encodeproject.org/experiments/ENCSR364ANL
DNase-Hypersensitivity Chromatin Accessibility ENCODE ENCSR426TPQ None https://www.encodeproject.org/experiments/ENCSR426TPQ
ChIP-Seq Histone H3K27me3 ENCODE ENCSR720SAS None https://www.encodeproject.org/experiments/ENCSR720SAS
ChIP-Seq ChIP-Seq Input ENCODE ENCSR688CIB None https://www.encodeproject.org/experiments/ENCSR688CIB
ChIP-Seq Histone H3K4me1 ENCODE ENCSR700NGJ None https://www.encodeproject.org/experiments/ENCSR700NGJ
ChIP-Seq ChIP-Seq Input ENCODE ENCSR163UEW None https://www.encodeproject.org/experiments/ENCSR163UEW
ChIP-Seq Histone H3K4me1 ENCODE ENCSR410UUH None https://www.encodeproject.org/experiments/ENCSR410UUH
ChIP-Seq Histone H3K4me3 ENCODE ENCSR949OYZ None https://www.encodeproject.org/experiments/ENCSR949OYZ
ChIP-Seq Histone H3K27ac ENCODE ENCSR791ISZ None https://www.encodeproject.org/experiments/ENCSR791ISZ
ChIP-Seq Histone H3K27ac ENCODE ENCSR367WYJ None https://www.encodeproject.org/experiments/ENCSR367WYJ
ChIP-Seq Histone H3K9me3 ENCODE ENCSR394DRL None https://www.encodeproject.org/experiments/ENCSR394DRL
ChIP-Seq Histone H3K4me3 ENCODE ENCSR245BEV None https://www.encodeproject.org/experiments/ENCSR245BEV
ChIP-Seq Histone H3K36me3 ENCODE ENCSR277PDE None https://www.encodeproject.org/experiments/ENCSR277PDE