IHECRE00001030.7 LIVE JSON
| Type | Single donor |
| Status | Complete |
| Project | NIH Roadmap Epigenomics |
| Description | REMC Epigenome (Class 2) for Esophagus using donors/samples:STL003 |
| Previous versions | IHECRE00001030.6 IHECRE00001030.5 IHECRE00001030.4 IHECRE00001030.3 IHECRE00001030.2 IHECRE00001030.1 |
Metadata
| Disease ontology curie | ncim:C115222 |
| Biomaterial type | Primary Tissue |
| Donor id | ENCDO058AAA |
| Disease ontology uri | https://nciterms.nci.nih.gov/ncitbrowser/ConceptReport.jsp?dictionary=NCI_Thesaurus&code=C115222 |
| Donor life stage | adult |
| Donor ethnicity | Caucasian |
| Donor sex | Male |
| Donor age unit | year |
| Biological replicates | ENCBS857GIO |
| Tissue type | esophagus |
| Taxon id | 9606 |
| Species | Homo sapiens |
| Disease | healthy with polysubstance abuse |
| Sample ontology uri | http://purl.obolibrary.org/obo/UBERON_0001043 |
| Donor age | 34 |
| Donor health status ontology uri | https://nciterms.nci.nih.gov/ncitbrowser/ConceptReport.jsp?dictionary=NCI_Thesaurus&code=C115222 |
| Collection method | unknown |
| Donor health status ontology curie | ncim:C115222 |
| Treatment | NA |
| Sample ontology curie | uberon:0001043 |
| Tissue depot | esophagus |
| Donor health status | healthy with polysubstance abuse |
| Biomaterial provider | Shin Lin at Washington University |
Raw data
| Assay Type | Experiment Type | Archive | Primary ID | Secondary ID | URL |
|---|---|---|---|---|---|
| Bisulfite-Seq | DNA Methylation | ENCODE | ENCSR559QOU | None | https://www.encodeproject.org/experiments/ENCSR559QOU |
| RNA-Seq | mRNA-Seq | ENCODE | ENCSR102TQN | None | https://www.encodeproject.org/experiments/ENCSR102TQN |
| ChIP-Seq | Histone H3K27ac | ENCODE | ENCSR679OVD | None | https://www.encodeproject.org/experiments/ENCSR679OVD |
| ChIP-Seq | Histone H3K9me3 | ENCODE | ENCSR150GLE | None | https://www.encodeproject.org/experiments/ENCSR150GLE |
| ChIP-Seq | ChIP-Seq Input | ENCODE | ENCSR161JTT | None | https://www.encodeproject.org/experiments/ENCSR161JTT |
| ChIP-Seq | Histone H3K4me3 | ENCODE | ENCSR577ILY | None | https://www.encodeproject.org/experiments/ENCSR577ILY |
| ChIP-Seq | Histone H3K4me1 | ENCODE | ENCSR306ZBD | None | https://www.encodeproject.org/experiments/ENCSR306ZBD |
| ChIP-Seq | Histone H3K27me3 | ENCODE | ENCSR088GXB | None | https://www.encodeproject.org/experiments/ENCSR088GXB |
| ChIP-Seq | Histone H3K36me3 | ENCODE | ENCSR034ZHF | None | https://www.encodeproject.org/experiments/ENCSR034ZHF |