IHECRE00001780.7 LIVE JSON  


Type Single donor
Status Complete
Project ENCODE
Description Reference epigenome for mouse liver (12.5 day embryonic)
Previous versions IHECRE00001780.6   IHECRE00001780.5   IHECRE00001780.4   IHECRE00001780.3   IHECRE00001780.2   IHECRE00001780.1  

Metadata


Disease ontology curie ncim:C115222
Biomaterial type Primary Tissue
Donor id ENCDO956IXV
Disease ontology uri https://nciterms.nci.nih.gov/ncitbrowser/ConceptReport.jsp?dictionary=NCI_Thesaurus&code=C115222
Donor life stage embryonic
Donor ethnicity NA
Donor sex Mixed
Donor age unit day
Biological replicates ENCBS236ISK
Tissue type liver
Taxon id 10090
Species Mus musculus
Disease healthy
Sample ontology uri http://purl.obolibrary.org/obo/UBERON_0002107
Donor age 12
Donor health status ontology uri https://nciterms.nci.nih.gov/ncitbrowser/ConceptReport.jsp?dictionary=NCI_Thesaurus&code=C115222
Collection method unknown
Donor health status ontology curie ncim:C115222
Treatment NA
Sample ontology curie uberon:0002107
Tissue depot liver
Donor health status healthy
Biomaterial provider Len Pennacchio at Joint Genome Institute

Raw data


Assay Type Experiment Type Archive Primary ID Secondary ID URL
ATAC-seq Chromatin Accessibility ENCODE ENCSR302LIV None https://www.encodeproject.org/experiments/ENCSR302LIV
miRNA-Seq smRNA-Seq ENCODE ENCSR453ESQ None https://www.encodeproject.org/experiments/ENCSR453ESQ
ChIP-Seq Histone H3K27ac ENCODE ENCSR136GMT None https://www.encodeproject.org/experiments/ENCSR136GMT
ChIP-Seq Histone H3K9ac ENCODE ENCSR607HIQ None https://www.encodeproject.org/experiments/ENCSR607HIQ
ChIP-Seq Histone H3K4me3 ENCODE ENCSR471SJG None https://www.encodeproject.org/experiments/ENCSR471SJG
ChIP-Seq Histone H3K36me3 ENCODE ENCSR295ZLV None https://www.encodeproject.org/experiments/ENCSR295ZLV
ChIP-Seq Histone H3K9me3 ENCODE ENCSR149GYK None https://www.encodeproject.org/experiments/ENCSR149GYK
ChIP-Seq Histone H3K4me2 ENCODE ENCSR110MSZ None https://www.encodeproject.org/experiments/ENCSR110MSZ
ChIP-Seq ChIP-Seq Input ENCODE ENCSR680ZSE None https://www.encodeproject.org/experiments/ENCSR680ZSE
ChIP-Seq Histone H3K27me3 ENCODE ENCSR642ZLN None https://www.encodeproject.org/experiments/ENCSR642ZLN
ChIP-Seq Histone H3K4me1 ENCODE ENCSR770OXU None https://www.encodeproject.org/experiments/ENCSR770OXU
Bisulfite-Seq DNA Methylation ENCODE ENCSR334GBD None https://www.encodeproject.org/experiments/ENCSR334GBD
RNA-Seq mRNA-Seq ENCODE ENCSR648YEP None https://www.encodeproject.org/experiments/ENCSR648YEP