IHECRE00001785.7 LIVE JSON  


Type Composite
Status Complete
Project ENCODE
Description Reference epigenome for mouse forebrain (0 day postnatal)
Previous versions IHECRE00001785.6   IHECRE00001785.5   IHECRE00001785.4   IHECRE00001785.3   IHECRE00001785.2   IHECRE00001785.1  

Metadata


Disease ontology curie ncim:C115222
Biomaterial type Primary Tissue
Disease ontology uri https://nciterms.nci.nih.gov/ncitbrowser/ConceptReport.jsp?dictionary=NCI_Thesaurus&code=C115222
Donor life stage postnatal
Donor ethnicity NA
Donor age unit day
Tissue type forebrain
Taxon id 10090
Species Mus musculus
Sample ontology uri http://purl.obolibrary.org/obo/UBERON_0001890
Donor age 0
Donor health status ontology uri https://nciterms.nci.nih.gov/ncitbrowser/ConceptReport.jsp?dictionary=NCI_Thesaurus&code=C115222
Collection method unknown
Donor health status ontology curie ncim:C115222
Treatment NA
Sample ontology curie uberon:0001890
Tissue depot forebrain

Raw data


Assay Type Experiment Type Archive Primary ID Secondary ID URL
ChIP-Seq ChIP-Seq Input ENCODE ENCSR264HIK None https://www.encodeproject.org/experiments/ENCSR264HIK
RNA-Seq total-RNA-Seq ENCODE ENCSR723SZV None https://www.encodeproject.org/experiments/ENCSR723SZV
ATAC-seq Chromatin Accessibility ENCODE ENCSR310MLB None https://www.encodeproject.org/experiments/ENCSR310MLB
ChIP-Seq Transcription Factor ENCODE ENCSR677HXC None https://www.encodeproject.org/experiments/ENCSR677HXC
Bisulfite-Seq DNA Methylation ENCODE ENCSR020GGM None https://www.encodeproject.org/experiments/ENCSR020GGM
ChIP-Seq Histone H3K27ac ENCODE ENCSR094TTT None https://www.encodeproject.org/experiments/ENCSR094TTT
ChIP-Seq Histone H3K36me3 ENCODE ENCSR069TDC None https://www.encodeproject.org/experiments/ENCSR069TDC
ChIP-Seq Histone H3K27me3 ENCODE ENCSR070MOK None https://www.encodeproject.org/experiments/ENCSR070MOK
ChIP-Seq Histone H3K4me3 ENCODE ENCSR258YWW None https://www.encodeproject.org/experiments/ENCSR258YWW
ChIP-Seq ChIP-Seq Input ENCODE ENCSR398NCK None https://www.encodeproject.org/experiments/ENCSR398NCK
ChIP-Seq Histone H3K9me3 ENCODE ENCSR093DWU None https://www.encodeproject.org/experiments/ENCSR093DWU
ChIP-Seq Histone H3K4me1 ENCODE ENCSR465PLB None https://www.encodeproject.org/experiments/ENCSR465PLB
ChIP-Seq Histone H3K4me2 ENCODE ENCSR906UJW None https://www.encodeproject.org/experiments/ENCSR906UJW
DNase-Hypersensitivity Chromatin Accessibility ENCODE ENCSR791AJY None https://www.encodeproject.org/experiments/ENCSR791AJY
ChIP-Seq Histone H3K9ac ENCODE ENCSR369RBO None https://www.encodeproject.org/experiments/ENCSR369RBO
RNA-Seq mRNA-Seq ENCODE ENCSR362AIZ None https://www.encodeproject.org/experiments/ENCSR362AIZ
miRNA-Seq smRNA-Seq ENCODE ENCSR683JZO None https://www.encodeproject.org/experiments/ENCSR683JZO
miRNA-Seq smRNA-Seq ENCODE ENCSR267CQC None https://www.encodeproject.org/experiments/ENCSR267CQC