IHECRE00001795.7 LIVE JSON  


Type Single donor
Status Complete
Project ENCODE
Description Reference epigenome for mouse forebrain (12.5 day embryonic)
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Metadata


Disease ontology curie ncim:C115222
Biomaterial type Primary Tissue
Donor id ENCDO956IXV
Disease ontology uri https://nciterms.nci.nih.gov/ncitbrowser/ConceptReport.jsp?dictionary=NCI_Thesaurus&code=C115222
Donor life stage embryonic
Donor ethnicity NA
Donor sex Mixed
Donor age unit day
Biological replicates ENCBS974GPH
Tissue type forebrain
Taxon id 10090
Species Mus musculus
Disease healthy
Sample ontology uri http://purl.obolibrary.org/obo/UBERON_0001890
Donor age 12
Donor health status ontology uri https://nciterms.nci.nih.gov/ncitbrowser/ConceptReport.jsp?dictionary=NCI_Thesaurus&code=C115222
Collection method unknown
Donor health status ontology curie ncim:C115222
Treatment NA
Sample ontology curie uberon:0001890
Tissue depot forebrain
Donor health status healthy
Biomaterial provider Len Pennacchio at Joint Genome Institute

Raw data


Assay Type Experiment Type Archive Primary ID Secondary ID URL
ATAC-seq Chromatin Accessibility ENCODE ENCSR559FAJ None https://www.encodeproject.org/experiments/ENCSR559FAJ
miRNA-Seq smRNA-Seq ENCODE ENCSR715QTV None https://www.encodeproject.org/experiments/ENCSR715QTV
ChIP-Seq Histone H3K4me1 ENCODE ENCSR243JOL None https://www.encodeproject.org/experiments/ENCSR243JOL
ChIP-Seq Histone H3K4me2 ENCODE ENCSR782SUW None https://www.encodeproject.org/experiments/ENCSR782SUW
ChIP-Seq Histone H3K4me3 ENCODE ENCSR527EUE None https://www.encodeproject.org/experiments/ENCSR527EUE
ChIP-Seq Histone H3K9ac ENCODE ENCSR161UUY None https://www.encodeproject.org/experiments/ENCSR161UUY
ChIP-Seq Histone H3K27ac ENCODE ENCSR966AIB None https://www.encodeproject.org/experiments/ENCSR966AIB
ChIP-Seq Histone H3K27me3 ENCODE ENCSR297CHD None https://www.encodeproject.org/experiments/ENCSR297CHD
ChIP-Seq Histone H3K36me3 ENCODE ENCSR345DDI None https://www.encodeproject.org/experiments/ENCSR345DDI
ChIP-Seq ChIP-Seq Input ENCODE ENCSR523QKO None https://www.encodeproject.org/experiments/ENCSR523QKO
ChIP-Seq Histone H3K9me3 ENCODE ENCSR634GFJ None https://www.encodeproject.org/experiments/ENCSR634GFJ
Bisulfite-Seq DNA Methylation ENCODE ENCSR007JSP None https://www.encodeproject.org/experiments/ENCSR007JSP
RNA-Seq mRNA-Seq ENCODE ENCSR647QBV None https://www.encodeproject.org/experiments/ENCSR647QBV