IHECRE00001805.7 LIVE JSON  


Type Single donor
Status Complete
Project ENCODE
Description Reference epigenome for mouse forebrain (15.5 day embryonic)
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Metadata


Disease ontology curie ncim:C115222
Biomaterial type Primary Tissue
Donor id ENCDO956IXV
Disease ontology uri https://nciterms.nci.nih.gov/ncitbrowser/ConceptReport.jsp?dictionary=NCI_Thesaurus&code=C115222
Donor life stage embryonic
Donor ethnicity NA
Donor sex Mixed
Donor age unit day
Biological replicates ENCBS841GER
Tissue type forebrain
Taxon id 10090
Species Mus musculus
Disease healthy
Sample ontology uri http://purl.obolibrary.org/obo/UBERON_0001890
Donor age 15
Donor health status ontology uri https://nciterms.nci.nih.gov/ncitbrowser/ConceptReport.jsp?dictionary=NCI_Thesaurus&code=C115222
Collection method unknown
Donor health status ontology curie ncim:C115222
Treatment NA
Sample ontology curie uberon:0001890
Tissue depot forebrain
Donor health status healthy
Biomaterial provider Len Pennacchio at Joint Genome Institute

Raw data


Assay Type Experiment Type Archive Primary ID Secondary ID URL
ATAC-seq Chromatin Accessibility ENCODE ENCSR976LWP None https://www.encodeproject.org/experiments/ENCSR976LWP
ChIP-Seq Histone H3K9me3 ENCODE ENCSR668BBX None https://www.encodeproject.org/experiments/ENCSR668BBX
Bisulfite-Seq DNA Methylation ENCODE ENCSR019HJV None https://www.encodeproject.org/experiments/ENCSR019HJV
RNA-Seq mRNA-Seq ENCODE ENCSR752RGN None https://www.encodeproject.org/experiments/ENCSR752RGN
ChIP-Seq Histone H3K36me3 ENCODE ENCSR437SFX None https://www.encodeproject.org/experiments/ENCSR437SFX
ChIP-Seq ChIP-Seq Input ENCODE ENCSR880HDV None https://www.encodeproject.org/experiments/ENCSR880HDV
ChIP-Seq Histone H3K27ac ENCODE ENCSR691NQH None https://www.encodeproject.org/experiments/ENCSR691NQH
ChIP-Seq Histone H3K27me3 ENCODE ENCSR564XSR None https://www.encodeproject.org/experiments/ENCSR564XSR
ChIP-Seq Histone H3K4me1 ENCODE ENCSR875KRK None https://www.encodeproject.org/experiments/ENCSR875KRK
ChIP-Seq Histone H3K4me3 ENCODE ENCSR022KDE None https://www.encodeproject.org/experiments/ENCSR022KDE
ChIP-Seq Histone H3K9ac ENCODE ENCSR717XCU None https://www.encodeproject.org/experiments/ENCSR717XCU
ChIP-Seq Histone H3K4me2 ENCODE ENCSR402ZLE None https://www.encodeproject.org/experiments/ENCSR402ZLE
miRNA-Seq smRNA-Seq ENCODE ENCSR758VDY None https://www.encodeproject.org/experiments/ENCSR758VDY