IHECRE00001841.6 LIVE JSON  


Type Single donor
Status Complete
Project ENCODE
Description Reference epigenome for mouse liver (15.5 day embryonic)
Previous versions IHECRE00001841.5   IHECRE00001841.4   IHECRE00001841.3   IHECRE00001841.2   IHECRE00001841.1  

Metadata


Disease ontology curie ncim:C115222
Biomaterial type Primary Tissue
Donor id ENCDO956IXV
Disease ontology uri https://nciterms.nci.nih.gov/ncitbrowser/ConceptReport.jsp?dictionary=NCI_Thesaurus&code=C115222
Donor life stage embryonic
Donor ethnicity NA
Donor sex Mixed
Donor age unit day
Biological replicates ENCBS734ENZ
Tissue type liver
Taxon id 10090
Species Mus musculus
Disease healthy
Sample ontology uri http://purl.obolibrary.org/obo/UBERON_0002107
Donor age 15
Donor health status ontology uri https://nciterms.nci.nih.gov/ncitbrowser/ConceptReport.jsp?dictionary=NCI_Thesaurus&code=C115222
Collection method unknown
Donor health status ontology curie ncim:C115222
Treatment NA
Sample ontology curie uberon:0002107
Tissue depot liver
Donor health status healthy
Biomaterial provider Len Pennacchio at Joint Genome Institute

Raw data


Assay Type Experiment Type Archive Primary ID Secondary ID URL
ATAC-seq Chromatin Accessibility ENCODE ENCSR465PYP None https://www.encodeproject.org/experiments/ENCSR465PYP
ChIP-Seq ChIP-Seq Input ENCODE ENCSR274AQL None https://www.encodeproject.org/experiments/ENCSR274AQL
ChIP-Seq Histone H3K4me2 ENCODE ENCSR258RGT None https://www.encodeproject.org/experiments/ENCSR258RGT
ChIP-Seq Histone H3K9ac ENCODE ENCSR889MYY None https://www.encodeproject.org/experiments/ENCSR889MYY
ChIP-Seq Histone H3K4me3 ENCODE ENCSR577SDJ None https://www.encodeproject.org/experiments/ENCSR577SDJ
ChIP-Seq Histone H3K9me3 ENCODE ENCSR855NKG None https://www.encodeproject.org/experiments/ENCSR855NKG
ChIP-Seq Histone H3K4me1 ENCODE ENCSR133EGP None https://www.encodeproject.org/experiments/ENCSR133EGP
ChIP-Seq Histone H3K36me3 ENCODE ENCSR510CGB None https://www.encodeproject.org/experiments/ENCSR510CGB
ChIP-Seq Histone H3K27me3 ENCODE ENCSR570HJI None https://www.encodeproject.org/experiments/ENCSR570HJI
RNA-Seq mRNA-Seq ENCODE ENCSR611PTP None https://www.encodeproject.org/experiments/ENCSR611PTP
ChIP-Seq Histone H3K27ac ENCODE ENCSR479LFP None https://www.encodeproject.org/experiments/ENCSR479LFP
Bisulfite-Seq DNA Methylation ENCODE ENCSR324NAF None https://www.encodeproject.org/experiments/ENCSR324NAF
miRNA-Seq smRNA-Seq ENCODE ENCSR246FZV None https://www.encodeproject.org/experiments/ENCSR246FZV