IHECRE00003698.6 LIVE JSON  


Type Single donor
Status Complete
Project ENCODE
Description Reference epigenome for mouse forebrain (10.5 day embryonic)
Previous versions IHECRE00003698.5   IHECRE00003698.4   IHECRE00003698.3   IHECRE00003698.2   IHECRE00003698.1  

Metadata


Disease ontology curie ncim:C115222
Biomaterial type Primary Tissue
Donor id ENCDO956IXV
Disease ontology uri https://nciterms.nci.nih.gov/ncitbrowser/ConceptReport.jsp?dictionary=NCI_Thesaurus&code=C115222
Donor life stage embryonic
Donor ethnicity NA
Donor sex Mixed
Donor age unit day
Tissue type forebrain
Taxon id 10090
Species Mus musculus
Sample ontology uri http://purl.obolibrary.org/obo/UBERON_0001890
Donor age 10
Donor health status ontology uri https://nciterms.nci.nih.gov/ncitbrowser/ConceptReport.jsp?dictionary=NCI_Thesaurus&code=C115222
Collection method unknown
Donor health status ontology curie ncim:C115222
Treatment NA
Sample ontology curie uberon:0001890
Tissue depot forebrain

Raw data


Assay Type Experiment Type Archive Primary ID Secondary ID URL
RNA-Seq mRNA-Seq ENCODE ENCSR304RDL None https://www.encodeproject.org/experiments/ENCSR304RDL
ChIP-Seq Histone H3K4me3 ENCODE ENCSR368RJD None https://www.encodeproject.org/experiments/ENCSR368RJD
miRNA-Seq smRNA-Seq ENCODE ENCSR509NLH None https://www.encodeproject.org/experiments/ENCSR509NLH
ChIP-Seq Histone H3K36me3 ENCODE ENCSR558NWQ None https://www.encodeproject.org/experiments/ENCSR558NWQ
ChIP-Seq Histone H3K27me3 ENCODE ENCSR735VEJ None https://www.encodeproject.org/experiments/ENCSR735VEJ
ChIP-Seq Histone H3K9me3 ENCODE ENCSR737JHU None https://www.encodeproject.org/experiments/ENCSR737JHU
ChIP-Seq ChIP-Seq Input ENCODE ENCSR776WPN None https://www.encodeproject.org/experiments/ENCSR776WPN
ChIP-Seq Histone H3K27ac ENCODE ENCSR825ZJV None https://www.encodeproject.org/experiments/ENCSR825ZJV
Bisulfite-Seq DNA Methylation ENCODE ENCSR888JFA None https://www.encodeproject.org/experiments/ENCSR888JFA
ChIP-Seq Histone H3K4me1 ENCODE ENCSR992SHK None https://www.encodeproject.org/experiments/ENCSR992SHK
DNase-Hypersensitivity Chromatin Accessibility ENCODE ENCSR756SPS None https://www.encodeproject.org/experiments/ENCSR756SPS