IHECRE00003698.6 LIVE JSON
Type | Single donor |
Status | Complete |
Project | ENCODE |
Description | Reference epigenome for mouse forebrain (10.5 day embryonic) |
Previous versions | IHECRE00003698.5 IHECRE00003698.4 IHECRE00003698.3 IHECRE00003698.2 IHECRE00003698.1 |
Metadata
Disease ontology curie | ncim:C115222 |
Biomaterial type | Primary Tissue |
Donor id | ENCDO956IXV |
Disease ontology uri | https://nciterms.nci.nih.gov/ncitbrowser/ConceptReport.jsp?dictionary=NCI_Thesaurus&code=C115222 |
Donor life stage | embryonic |
Donor ethnicity | NA |
Donor sex | Mixed |
Donor age unit | day |
Tissue type | forebrain |
Taxon id | 10090 |
Species | Mus musculus |
Sample ontology uri | http://purl.obolibrary.org/obo/UBERON_0001890 |
Donor age | 10 |
Donor health status ontology uri | https://nciterms.nci.nih.gov/ncitbrowser/ConceptReport.jsp?dictionary=NCI_Thesaurus&code=C115222 |
Collection method | unknown |
Donor health status ontology curie | ncim:C115222 |
Treatment | NA |
Sample ontology curie | uberon:0001890 |
Tissue depot | forebrain |
Raw data
Assay Type | Experiment Type | Archive | Primary ID | Secondary ID | URL |
---|---|---|---|---|---|
RNA-Seq | mRNA-Seq | ENCODE | ENCSR304RDL | None | https://www.encodeproject.org/experiments/ENCSR304RDL |
ChIP-Seq | Histone H3K4me3 | ENCODE | ENCSR368RJD | None | https://www.encodeproject.org/experiments/ENCSR368RJD |
miRNA-Seq | smRNA-Seq | ENCODE | ENCSR509NLH | None | https://www.encodeproject.org/experiments/ENCSR509NLH |
ChIP-Seq | Histone H3K36me3 | ENCODE | ENCSR558NWQ | None | https://www.encodeproject.org/experiments/ENCSR558NWQ |
ChIP-Seq | Histone H3K27me3 | ENCODE | ENCSR735VEJ | None | https://www.encodeproject.org/experiments/ENCSR735VEJ |
ChIP-Seq | Histone H3K9me3 | ENCODE | ENCSR737JHU | None | https://www.encodeproject.org/experiments/ENCSR737JHU |
ChIP-Seq | ChIP-Seq Input | ENCODE | ENCSR776WPN | None | https://www.encodeproject.org/experiments/ENCSR776WPN |
ChIP-Seq | Histone H3K27ac | ENCODE | ENCSR825ZJV | None | https://www.encodeproject.org/experiments/ENCSR825ZJV |
Bisulfite-Seq | DNA Methylation | ENCODE | ENCSR888JFA | None | https://www.encodeproject.org/experiments/ENCSR888JFA |
ChIP-Seq | Histone H3K4me1 | ENCODE | ENCSR992SHK | None | https://www.encodeproject.org/experiments/ENCSR992SHK |
DNase-Hypersensitivity | Chromatin Accessibility | ENCODE | ENCSR756SPS | None | https://www.encodeproject.org/experiments/ENCSR756SPS |