IHECRE00003703.6 LIVE JSON  


Type Single donor
Status Complete
Project ENCODE
Description Reference epigenome for mouse limb (10.5 day embryonic)
Previous versions IHECRE00003703.5   IHECRE00003703.4   IHECRE00003703.3   IHECRE00003703.2   IHECRE00003703.1  

Metadata


Disease ontology curie ncim:C115222
Biomaterial type Primary Tissue
Donor id ENCDO956IXV
Disease ontology uri https://nciterms.nci.nih.gov/ncitbrowser/ConceptReport.jsp?dictionary=NCI_Thesaurus&code=C115222
Donor life stage embryonic
Donor ethnicity NA
Donor sex Mixed
Donor age unit day
Tissue type limb
Taxon id 10090
Species Mus musculus
Disease NA
Sample ontology uri http://purl.obolibrary.org/obo/UBERON_0002101
Donor age 10
Donor health status ontology uri https://nciterms.nci.nih.gov/ncitbrowser/ConceptReport.jsp?dictionary=NCI_Thesaurus&code=C115222
Collection method unknown
Donor health status ontology curie ncim:C115222
Treatment NA
Sample ontology curie uberon:0002101
Tissue depot limb
Donor health status NA

Raw data


Assay Type Experiment Type Archive Primary ID Secondary ID URL
ChIP-Seq Histone H3K4me1 ENCODE ENCSR238SGC None https://www.encodeproject.org/experiments/ENCSR238SGC
ChIP-Seq Histone H3K36me3 ENCODE ENCSR242PHH None https://www.encodeproject.org/experiments/ENCSR242PHH
ChIP-Seq Histone H3K4me3 ENCODE ENCSR318QFY None https://www.encodeproject.org/experiments/ENCSR318QFY
Bisulfite-Seq DNA Methylation ENCODE ENCSR377CZO None https://www.encodeproject.org/experiments/ENCSR377CZO
ChIP-Seq ChIP-Seq Input ENCODE ENCSR687ALB None https://www.encodeproject.org/experiments/ENCSR687ALB
miRNA-Seq smRNA-Seq ENCODE ENCSR715NEZ None https://www.encodeproject.org/experiments/ENCSR715NEZ
ChIP-Seq Histone H3K27ac ENCODE ENCSR863VHE None https://www.encodeproject.org/experiments/ENCSR863VHE
ChIP-Seq Histone H3K9me3 ENCODE ENCSR890ACP None https://www.encodeproject.org/experiments/ENCSR890ACP
ChIP-Seq Histone H3K27me3 ENCODE ENCSR906RTN None https://www.encodeproject.org/experiments/ENCSR906RTN
RNA-Seq mRNA-Seq ENCODE ENCSR968QHO None https://www.encodeproject.org/experiments/ENCSR968QHO
DNase-Hypersensitivity Chromatin Accessibility ENCODE ENCSR380VCU None https://www.encodeproject.org/experiments/ENCSR380VCU