IHECRE00004635.6 LIVE JSON
| Type | Single donor |
| Status | Complete |
| Project | ENCODE |
| Description | Reference epigenome for human H9-derived smooth muscle cell |
| Previous versions | IHECRE00004635.5 IHECRE00004635.4 IHECRE00004635.3 IHECRE00004635.2 IHECRE00004635.1 |
Metadata
| Disease ontology curie | ncim:C115222 |
| Biomaterial type | Primary Cell Culture |
| Donor id | ENCDO222AAA |
| Disease ontology uri | https://nciterms.nci.nih.gov/ncitbrowser/ConceptReport.jsp?dictionary=NCI_Thesaurus&code=C115222 |
| Donor life stage | embryonic |
| Donor ethnicity | NA |
| Passage if expanded | NA |
| Donor sex | Female |
| Donor age unit | day |
| Taxon id | 9606 |
| Species | Homo sapiens |
| Disease | healthy |
| Sample ontology uri | http://purl.obolibrary.org/obo/CL_0000192 |
| Donor age | 5 |
| Donor health status ontology uri | https://nciterms.nci.nih.gov/ncitbrowser/ConceptReport.jsp?dictionary=NCI_Thesaurus&code=C115222 |
| Donor health status ontology curie | ncim:C115222 |
| Treatment | NA |
| Culture conditions | unknown |
| Sample ontology curie | cl:0000192 |
| Cell type | smooth muscle cell |
| Markers | unknown |
| Donor health status | healthy |
| Biomaterial provider | Southeast Stem Cell Consortium |
Raw data
| Assay Type | Experiment Type | Archive | Primary ID | Secondary ID | URL |
|---|---|---|---|---|---|
| RNA-Seq | mRNA-Seq | ENCODE | ENCSR236URT | None | https://www.encodeproject.org/experiments/ENCSR236URT |
| ChIP-Seq | Transcription Factor | ENCODE | ENCSR261VAS | None | https://www.encodeproject.org/experiments/ENCSR261VAS |
| ChIP-Seq | ChIP-Seq Input | ENCODE | ENCSR729MRJ | None | https://www.encodeproject.org/experiments/ENCSR729MRJ |
| ChIP-Seq | Histone H3K27me3 | ENCODE | ENCSR143RMH | None | https://www.encodeproject.org/experiments/ENCSR143RMH |
| ChIP-Seq | Histone H3K36me3 | ENCODE | ENCSR651JDA | None | https://www.encodeproject.org/experiments/ENCSR651JDA |
| ChIP-Seq | Histone H3K4me1 | ENCODE | ENCSR130IMV | None | https://www.encodeproject.org/experiments/ENCSR130IMV |
| ChIP-Seq | Histone H3K4me3 | ENCODE | ENCSR515PKY | None | https://www.encodeproject.org/experiments/ENCSR515PKY |
| ChIP-Seq | Histone H3K27ac | ENCODE | ENCSR210ZPC | None | https://www.encodeproject.org/experiments/ENCSR210ZPC |
| ChIP-Seq | Histone H3K9me3 | ENCODE | ENCSR090QTV | None | https://www.encodeproject.org/experiments/ENCSR090QTV |
| RNA-Seq | total-RNA-Seq | ENCODE | ENCSR052FJA | None | https://www.encodeproject.org/experiments/ENCSR052FJA |
| miRNA-Seq | smRNA-Seq | ENCODE | ENCSR155LSV | None | https://www.encodeproject.org/experiments/ENCSR155LSV |
| Bisulfite-Seq | DNA Methylation | ENCODE | ENCSR076OHG | None | https://www.encodeproject.org/experiments/ENCSR076OHG |