IHECRE00004635.6 LIVE JSON
Type | Single donor |
Status | Complete |
Project | ENCODE |
Description | Reference epigenome for human H9-derived smooth muscle cell |
Previous versions | IHECRE00004635.5 IHECRE00004635.4 IHECRE00004635.3 IHECRE00004635.2 IHECRE00004635.1 |
Metadata
Disease ontology curie | ncim:C115222 |
Biomaterial type | Primary Cell Culture |
Donor id | ENCDO222AAA |
Disease ontology uri | https://nciterms.nci.nih.gov/ncitbrowser/ConceptReport.jsp?dictionary=NCI_Thesaurus&code=C115222 |
Donor life stage | embryonic |
Donor ethnicity | NA |
Passage if expanded | NA |
Donor sex | Female |
Donor age unit | day |
Taxon id | 9606 |
Species | Homo sapiens |
Disease | healthy |
Sample ontology uri | http://purl.obolibrary.org/obo/CL_0000192 |
Donor age | 5 |
Donor health status ontology uri | https://nciterms.nci.nih.gov/ncitbrowser/ConceptReport.jsp?dictionary=NCI_Thesaurus&code=C115222 |
Donor health status ontology curie | ncim:C115222 |
Treatment | NA |
Culture conditions | unknown |
Sample ontology curie | cl:0000192 |
Cell type | smooth muscle cell |
Markers | unknown |
Donor health status | healthy |
Biomaterial provider | Southeast Stem Cell Consortium |
Raw data
Assay Type | Experiment Type | Archive | Primary ID | Secondary ID | URL |
---|---|---|---|---|---|
RNA-Seq | mRNA-Seq | ENCODE | ENCSR236URT | None | https://www.encodeproject.org/experiments/ENCSR236URT |
ChIP-Seq | Transcription Factor | ENCODE | ENCSR261VAS | None | https://www.encodeproject.org/experiments/ENCSR261VAS |
ChIP-Seq | ChIP-Seq Input | ENCODE | ENCSR729MRJ | None | https://www.encodeproject.org/experiments/ENCSR729MRJ |
ChIP-Seq | Histone H3K27me3 | ENCODE | ENCSR143RMH | None | https://www.encodeproject.org/experiments/ENCSR143RMH |
ChIP-Seq | Histone H3K36me3 | ENCODE | ENCSR651JDA | None | https://www.encodeproject.org/experiments/ENCSR651JDA |
ChIP-Seq | Histone H3K4me1 | ENCODE | ENCSR130IMV | None | https://www.encodeproject.org/experiments/ENCSR130IMV |
ChIP-Seq | Histone H3K4me3 | ENCODE | ENCSR515PKY | None | https://www.encodeproject.org/experiments/ENCSR515PKY |
ChIP-Seq | Histone H3K27ac | ENCODE | ENCSR210ZPC | None | https://www.encodeproject.org/experiments/ENCSR210ZPC |
ChIP-Seq | Histone H3K9me3 | ENCODE | ENCSR090QTV | None | https://www.encodeproject.org/experiments/ENCSR090QTV |
RNA-Seq | total-RNA-Seq | ENCODE | ENCSR052FJA | None | https://www.encodeproject.org/experiments/ENCSR052FJA |
miRNA-Seq | smRNA-Seq | ENCODE | ENCSR155LSV | None | https://www.encodeproject.org/experiments/ENCSR155LSV |
Bisulfite-Seq | DNA Methylation | ENCODE | ENCSR076OHG | None | https://www.encodeproject.org/experiments/ENCSR076OHG |