This term is obsolete.
Note that process and function information are included in the term and definition for the purpose of describing and distinguishing the complex.

GO:0000112 JSON

nucleotide-excision repair factor 3 complex

Cellular Component

Definition (GO:0000112 GONUTS page)

One of several protein complexes involved in nucleotide-excision repair; possesses endodeoxynuclease and DNA helicase activities. In S. cerevisiae, it is composed of Rad2p and the core TFIIH-Ssl2p complex (core TFIIH is composed of Rad3p, Tfb1p, Tfb2p, Ssl1p, Tfb4p and Tfb5p. Note that Ssl2p is also called Rad25p). PMID:10915862 PMID:14500720 PMID:7813015

Comments

Note that process and function information are included in the term and definition for the purpose of describing and distinguishing the complex.

6,112 annotations

Synonyms

Synonyms are alternative words or phrases closely related in meaning to the term name, with indication of the relationship between the name and synonym given by the synonym scope.

Synonym Type
NEF3 complex exact

Ancestor Chart

Ancestor chart for GO:0000112
Chart options
Ancestor chart

Child Terms

This table lists all terms that are direct descendants (child terms) of GO:0000112

Child Term Relationship to
GO:0000112
core TFIIH complex portion of NEF3 complex
part_of

Taxon Constraints

The use of this term should conform to the following taxon constraints:

Ancestor GO ID Ancestor GO Term Name Relationship Taxon ID Taxon Reference(s)
GO:0000112 nucleotide-excision repair factor 3 complex Only in Taxon 2759 Eukaryota

More information on taxon constraints in GO is available here

Annotation Blacklist

This list aims to correct incorrect annotations to UniProtKB accessions inferred from electronic annotation (IEA) methods that are supplied by the UniProt-GOA project to the GO Consortium:

Category Entity Type Entity ID Taxon ID Entity Name Ancestor GO ID Reason Rule/Method ID
NOT-qualified manual protein A0A096MJ18 10116 A0A096MJ18_RAT GO:0005634 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096
NOT-qualified manual protein A0A096MK97 10116 A0A096MK97_RAT GO:0005634 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096
NOT-qualified manual protein A0A0G2JW23 10116 A0A0G2JW23_RAT GO:0005634 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096
NOT-qualified manual protein A0A0G2K8T1 10116 A0A0G2K8T1_RAT GO:0005634 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096
NOT-qualified manual protein A0A1B0GR71 10090 A0A1B0GR71_MOUSE GO:0005634 1 NOT-qualified manual annotation exists with evidence code ECO:0000314 from this reference: PMID:16904636
NOT-qualified manual protein A0A1B0GRK6 10090 A0A1B0GRK6_MOUSE GO:0005634 1 NOT-qualified manual annotation exists with evidence code ECO:0000314 from this reference: PMID:16904636
NOT-qualified manual protein A0A1D8PHF8 237561 A0A1D8PHF8_CANAL GO:0005634 1 NOT-qualified manual annotation exists with evidence code ECO:0000314 from this reference: PMID:8760936
NOT-qualified manual protein A0A1W2Q633 10116 A0A1W2Q633_RAT GO:0005634 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096
NOT-qualified manual protein A0A8I5Y8H4 10116 A0A8I5Y8H4_RAT GO:0005634 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096
NOT-qualified manual protein A0A8I6A0E5 10116 A0A8I6A0E5_RAT GO:0005634 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096

Co-occurring Terms

These tables show the number of times the term listed in the table has been co-annotated.

No co-occurrence statistics for GO:0000112 based on ALL annotations
The top 100 of 155 co-occurring terms
Co-occurring Term PR S% #Together #Compared
nucleotide-excision repair factor 3 complex
32,489.73 100.00 6,099 6,099
transcription factor TFIIH holo complex
6,382.66 19.62 6,057 30,832
transcription preinitiation complex
6,112.93 18.46 5,538 29,434
transcription initiation at RNA polymerase II promoter
2,023.01 6.22 6,056 97,260
regulation of mitotic recombination
15,951.28 5.06 326 664
hair cell differentiation
11,499.96 3.76 246 695
transcription factor TFIIH core complex
1,201.41 2.96 790 21,364
transcription open complex formation at RNA polymerase II promoter
12,622.94 2.76 176 453
RNA polymerase II promoter clearance
11,551.90 2.74 176 495
transcriptional start site selection at RNA polymerase II promoter
3,326.92 2.29 175 1,709
Totals 94476 134379306
No co-occurrence statistics for GO:0000112 based on MANUAL annotations
The top 66 of 66 co-occurring terms
Co-occurring Term PR S% #Together #Compared
nucleotide-excision repair factor 3 complex
9,802.31 100.00 144 144
transcription preinitiation complex
1,919.74 19.24 132 674
transcription factor TFIIH holo complex
1,603.60 16.32 142 868
3'-5' DNA helicase activity
780.87 7.91 132 1,657
transcription initiation at RNA polymerase II promoter
715.02 7.28 141 1,933
hair cell differentiation
2,246.36 6.08 11 48
transcription factor TFIIH core complex
298.98 2.38 14 459
embryonic organ development
210.35 1.67 10 466
regulation of mitotic cell cycle phase transition
565.52 1.55 3 52
regulation of mitotic recombination
2,450.58 1.33 2 8
Totals 911 813530

Change Log

Timestamp Action Category Detail
2024-09-05 Added CONSTRAINT in_taxon NCBITaxon:2759 (Eukaryota)
2014-03-08 Deleted DEFINITION One of several protein complexes involved in nucleotide-excision repair; possesses endodeoxynuclease and DNA helicase activities. In S. cerevisiae, it is composed of Rad2p and the core TFIIH-Ssl2p complex (Core TFIIH is composed of Rad3p, Tfb1p, Tfb2p, Ssl1p, and Tfb4p. Note that Ssl2p is also called Rad25p).
2014-03-08 Added DEFINITION One of several protein complexes involved in nucleotide-excision repair; possesses endodeoxynuclease and DNA helicase activities. In S. cerevisiae, it is composed of Rad2p and the core TFIIH-Ssl2p complex (core TFIIH is composed of Rad3p, Tfb1p, Tfb2p, Ssl1p, Tfb4p and Tfb5p. Note that Ssl2p is also called Rad25p).
2008-05-13 Added DEFINITION One of several protein complexes involved in nucleotide-excision repair; possesses endodeoxynuclease and DNA helicase activities. In S. cerevisiae, it is composed of Rad2p and the core TFIIH-Ssl2p complex (Core TFIIH is composed of Rad3p, Tfb1p, Tfb2p, Ssl1p, and Tfb4p. Note that Ssl2p is also called Rad25p).
2008-05-12 Deleted DEFINITION One of several protein complexes involved in nucleotide-excision repair; possesses endodeoxynuclease and DNA helicase activities. In S. cerevisiae, it is composed of Rad2p and the core TFIIH-Ssl2p complex (Core TFIIH is composed of Rad3p, Tfb1p, Tfb2p, Ssl1p, and Tfb4p. Note that Ssl2p is also called Rad25p).
2008-04-01 Updated RELATION is a GO:0000109 (nucleotide-excision repair complex)
2007-08-09 Deleted SYNONYM NEF3 complex
2007-08-09 Added SYNONYM NEF3 complex
2007-07-27 Updated DEFINITION One of several protein complexes involved in nucleotide-excision repair; possesses endodeoxynuclease and DNA helicase activities. In S. cerevisiae, it is composed of Rad2p and the core TFIIH-Ssl2p complex (Core TFIIH is composed of Rad3p, Tfb1p, Tfb2p, Ssl1p, and Tfb4p. Note that Ssl2p is also called Rad25p).
2007-03-06 Updated DEFINITION One of several protein complexes involved in nucleotide-excision repair; possesses endodeoxynuclease and DNA helicase activities. In S. cerevisiae, it is composed of Rad2p and the core TFIIH-Ssl2p complex (Core TFIIH is composed of Rad3, Tfb1, Tfb2, Ssl1, and Tfb4. Note that Ssl2p is also called Rad25).
Timestamp Action Category Detail
2005-10-02 Updated TERM nucleotide-excision repair factor 3 complex
2002-11-01 Updated TERM nucleotide excision repair factor 3 complex
2002-02-06 Updated TERM nucleotide excision repair factor 3
2001-04-03 Updated TERM nucleotide excision repair factor 3
2001-03-30 Added TERM nucleotide excision repair factor 3
Timestamp Action Category Detail
2014-03-08 Deleted DEFINITION One of several protein complexes involved in nucleotide-excision repair; possesses endodeoxynuclease and DNA helicase activities. In S. cerevisiae, it is composed of Rad2p and the core TFIIH-Ssl2p complex (Core TFIIH is composed of Rad3p, Tfb1p, Tfb2p, Ssl1p, and Tfb4p. Note that Ssl2p is also called Rad25p).
2014-03-08 Added DEFINITION One of several protein complexes involved in nucleotide-excision repair; possesses endodeoxynuclease and DNA helicase activities. In S. cerevisiae, it is composed of Rad2p and the core TFIIH-Ssl2p complex (core TFIIH is composed of Rad3p, Tfb1p, Tfb2p, Ssl1p, Tfb4p and Tfb5p. Note that Ssl2p is also called Rad25p).
2008-05-13 Added DEFINITION One of several protein complexes involved in nucleotide-excision repair; possesses endodeoxynuclease and DNA helicase activities. In S. cerevisiae, it is composed of Rad2p and the core TFIIH-Ssl2p complex (Core TFIIH is composed of Rad3p, Tfb1p, Tfb2p, Ssl1p, and Tfb4p. Note that Ssl2p is also called Rad25p).
2008-05-12 Deleted DEFINITION One of several protein complexes involved in nucleotide-excision repair; possesses endodeoxynuclease and DNA helicase activities. In S. cerevisiae, it is composed of Rad2p and the core TFIIH-Ssl2p complex (Core TFIIH is composed of Rad3p, Tfb1p, Tfb2p, Ssl1p, and Tfb4p. Note that Ssl2p is also called Rad25p).
2007-08-09 Deleted SYNONYM NEF3 complex
2007-08-09 Added SYNONYM NEF3 complex
2007-07-27 Updated DEFINITION One of several protein complexes involved in nucleotide-excision repair; possesses endodeoxynuclease and DNA helicase activities. In S. cerevisiae, it is composed of Rad2p and the core TFIIH-Ssl2p complex (Core TFIIH is composed of Rad3p, Tfb1p, Tfb2p, Ssl1p, and Tfb4p. Note that Ssl2p is also called Rad25p).
2007-03-06 Updated DEFINITION One of several protein complexes involved in nucleotide-excision repair; possesses endodeoxynuclease and DNA helicase activities. In S. cerevisiae, it is composed of Rad2p and the core TFIIH-Ssl2p complex (Core TFIIH is composed of Rad3, Tfb1, Tfb2, Ssl1, and Tfb4. Note that Ssl2p is also called Rad25).
2005-09-30 Updated DEFINITION One of several protein complexes involved in nucleotide-excision repair; possesses endodeoxynuclease and DNA helicase activities.
2004-03-23 Added DEFINITION One of several protein complexes involved in nucleotide excision repair; possesses endodeoxynuclease and DNA helicase activities.
2004-03-18 Deleted SYNONYM NEF3
2004-03-18 Added SYNONYM NEF3 complex
2001-03-30 Added SYNONYM NEF3
Timestamp Action Category Detail
2008-04-01 Updated RELATION is a GO:0000109 (nucleotide-excision repair complex)
Timestamp Action Category Detail
Timestamp Action Category Detail
2024-09-05 Added CONSTRAINT in_taxon NCBITaxon:2759 (Eukaryota)
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