Note that process and function information are included in the term and definition for the purpose of describing and distinguishing the complex.
GO:0000112
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nucleotide-excision repair factor 3 complex
Cellular Component
Definition (GO:0000112 GONUTS page)
One of several protein complexes involved in nucleotide-excision repair; possesses endodeoxynuclease and DNA helicase activities. In S. cerevisiae, it is composed of Rad2p and the core TFIIH-Ssl2p complex (core TFIIH is composed of Rad3p, Tfb1p, Tfb2p, Ssl1p, Tfb4p and Tfb5p. Note that Ssl2p is also called Rad25p). PMID:10915862 PMID:14500720 PMID:7813015
Comments
Note that process and function information are included in the term and definition for the purpose of describing and distinguishing the complex.
Synonyms
Synonyms are alternative words or phrases closely related in meaning to the term name, with indication of the relationship between the name and synonym given by the synonym scope.
Synonym | Type |
---|---|
NEF3 complex | exact |
Ancestor Chart
Child Terms
This table lists all terms that are direct descendants (child terms) of GO:0000112
Child Term | Relationship to GO:0000112 |
---|---|
core TFIIH complex portion of NEF3 complex
|
part_of |
Taxon Constraints
The use of this term should conform to the following taxon constraints:
Ancestor GO ID | Ancestor GO Term Name | Relationship | Taxon ID | Taxon | Reference(s) |
---|---|---|---|---|---|
GO:0000112 | nucleotide-excision repair factor 3 complex | Only in Taxon | 2759 | Eukaryota |
More information on taxon constraints in GO is available here
Annotation Blacklist
This list aims to correct incorrect annotations to UniProtKB accessions inferred from electronic annotation (IEA) methods that are supplied by the UniProt-GOA project to the GO Consortium:
Category | Entity Type | Entity ID | Taxon ID | Entity Name | Ancestor GO ID | Reason | Rule/Method ID |
---|---|---|---|---|---|---|---|
NOT-qualified manual | protein | A0A096MJ18 | 10116 | A0A096MJ18_RAT | GO:0005634 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | A0A096MK97 | 10116 | A0A096MK97_RAT | GO:0005634 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | A0A0G2JW23 | 10116 | A0A0G2JW23_RAT | GO:0005634 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | A0A0G2K8T1 | 10116 | A0A0G2K8T1_RAT | GO:0005634 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | A0A1B0GR71 | 10090 | A0A1B0GR71_MOUSE | GO:0005634 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000314 from this reference: PMID:16904636 | |
NOT-qualified manual | protein | A0A1B0GRK6 | 10090 | A0A1B0GRK6_MOUSE | GO:0005634 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000314 from this reference: PMID:16904636 | |
NOT-qualified manual | protein | A0A1D8PHF8 | 237561 | A0A1D8PHF8_CANAL | GO:0005634 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000314 from this reference: PMID:8760936 | |
NOT-qualified manual | protein | A0A1W2Q633 | 10116 | A0A1W2Q633_RAT | GO:0005634 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | A0A8I5Y8H4 | 10116 | A0A8I5Y8H4_RAT | GO:0005634 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | A0A8I6A0E5 | 10116 | A0A8I6A0E5_RAT | GO:0005634 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 |
Co-occurring Terms
These tables show the number of times the term listed in the table has been co-annotated.
No co-occurrence statistics for GO:0000112 based on ALL annotations
The top 100 of 155 co-occurring terms
Co-occurring Term | PR | S% | #Together | #Compared |
---|---|---|---|---|
nucleotide-excision repair factor 3 complex
|
32,489.73 | 100.00 | 6,099 | 6,099 |
transcription factor TFIIH holo complex
|
6,382.66 | 19.62 | 6,057 | 30,832 |
transcription preinitiation complex
|
6,112.93 | 18.46 | 5,538 | 29,434 |
transcription initiation at RNA polymerase II promoter
|
2,023.01 | 6.22 | 6,056 | 97,260 |
regulation of mitotic recombination
|
15,951.28 | 5.06 | 326 | 664 |
hair cell differentiation
|
11,499.96 | 3.76 | 246 | 695 |
transcription factor TFIIH core complex
|
1,201.41 | 2.96 | 790 | 21,364 |
transcription open complex formation at RNA polymerase II promoter
|
12,622.94 | 2.76 | 176 | 453 |
RNA polymerase II promoter clearance
|
11,551.90 | 2.74 | 176 | 495 |
transcriptional start site selection at RNA polymerase II promoter
|
3,326.92 | 2.29 | 175 | 1,709 |
Totals | 94476 | 134379306 |
No co-occurrence statistics for GO:0000112 based on MANUAL annotations
The top 66 of 66 co-occurring terms
Co-occurring Term | PR | S% | #Together | #Compared |
---|---|---|---|---|
nucleotide-excision repair factor 3 complex
|
9,802.31 | 100.00 | 144 | 144 |
transcription preinitiation complex
|
1,919.74 | 19.24 | 132 | 674 |
transcription factor TFIIH holo complex
|
1,603.60 | 16.32 | 142 | 868 |
3'-5' DNA helicase activity
|
780.87 | 7.91 | 132 | 1,657 |
transcription initiation at RNA polymerase II promoter
|
715.02 | 7.28 | 141 | 1,933 |
hair cell differentiation
|
2,246.36 | 6.08 | 11 | 48 |
transcription factor TFIIH core complex
|
298.98 | 2.38 | 14 | 459 |
embryonic organ development
|
210.35 | 1.67 | 10 | 466 |
regulation of mitotic cell cycle phase transition
|
565.52 | 1.55 | 3 | 52 |
regulation of mitotic recombination
|
2,450.58 | 1.33 | 2 | 8 |
Totals | 911 | 813530 |
Change Log
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Timestamp | Action | Category | Detail |
---|---|---|---|
2024-09-05 | Added | CONSTRAINT | in_taxon NCBITaxon:2759 (Eukaryota) |
2014-03-08 | Deleted | DEFINITION | One of several protein complexes involved in nucleotide-excision repair; possesses endodeoxynuclease and DNA helicase activities. In S. cerevisiae, it is composed of Rad2p and the core TFIIH-Ssl2p complex (Core TFIIH is composed of Rad3p, Tfb1p, Tfb2p, Ssl1p, and Tfb4p. Note that Ssl2p is also called Rad25p). |
2014-03-08 | Added | DEFINITION | One of several protein complexes involved in nucleotide-excision repair; possesses endodeoxynuclease and DNA helicase activities. In S. cerevisiae, it is composed of Rad2p and the core TFIIH-Ssl2p complex (core TFIIH is composed of Rad3p, Tfb1p, Tfb2p, Ssl1p, Tfb4p and Tfb5p. Note that Ssl2p is also called Rad25p). |
2008-05-13 | Added | DEFINITION | One of several protein complexes involved in nucleotide-excision repair; possesses endodeoxynuclease and DNA helicase activities. In S. cerevisiae, it is composed of Rad2p and the core TFIIH-Ssl2p complex (Core TFIIH is composed of Rad3p, Tfb1p, Tfb2p, Ssl1p, and Tfb4p. Note that Ssl2p is also called Rad25p). |
2008-05-12 | Deleted | DEFINITION | One of several protein complexes involved in nucleotide-excision repair; possesses endodeoxynuclease and DNA helicase activities. In S. cerevisiae, it is composed of Rad2p and the core TFIIH-Ssl2p complex (Core TFIIH is composed of Rad3p, Tfb1p, Tfb2p, Ssl1p, and Tfb4p. Note that Ssl2p is also called Rad25p). |
2008-04-01 | Updated | RELATION | is a GO:0000109 (nucleotide-excision repair complex) |
2007-08-09 | Deleted | SYNONYM | NEF3 complex |
2007-08-09 | Added | SYNONYM | NEF3 complex |
2007-07-27 | Updated | DEFINITION | One of several protein complexes involved in nucleotide-excision repair; possesses endodeoxynuclease and DNA helicase activities. In S. cerevisiae, it is composed of Rad2p and the core TFIIH-Ssl2p complex (Core TFIIH is composed of Rad3p, Tfb1p, Tfb2p, Ssl1p, and Tfb4p. Note that Ssl2p is also called Rad25p). |
2007-03-06 | Updated | DEFINITION | One of several protein complexes involved in nucleotide-excision repair; possesses endodeoxynuclease and DNA helicase activities. In S. cerevisiae, it is composed of Rad2p and the core TFIIH-Ssl2p complex (Core TFIIH is composed of Rad3, Tfb1, Tfb2, Ssl1, and Tfb4. Note that Ssl2p is also called Rad25). |
Timestamp | Action | Category | Detail |
---|---|---|---|
2005-10-02 | Updated | TERM | nucleotide-excision repair factor 3 complex |
2002-11-01 | Updated | TERM | nucleotide excision repair factor 3 complex |
2002-02-06 | Updated | TERM | nucleotide excision repair factor 3 |
2001-04-03 | Updated | TERM | nucleotide excision repair factor 3 |
2001-03-30 | Added | TERM | nucleotide excision repair factor 3 |
Timestamp | Action | Category | Detail |
---|---|---|---|
2014-03-08 | Deleted | DEFINITION | One of several protein complexes involved in nucleotide-excision repair; possesses endodeoxynuclease and DNA helicase activities. In S. cerevisiae, it is composed of Rad2p and the core TFIIH-Ssl2p complex (Core TFIIH is composed of Rad3p, Tfb1p, Tfb2p, Ssl1p, and Tfb4p. Note that Ssl2p is also called Rad25p). |
2014-03-08 | Added | DEFINITION | One of several protein complexes involved in nucleotide-excision repair; possesses endodeoxynuclease and DNA helicase activities. In S. cerevisiae, it is composed of Rad2p and the core TFIIH-Ssl2p complex (core TFIIH is composed of Rad3p, Tfb1p, Tfb2p, Ssl1p, Tfb4p and Tfb5p. Note that Ssl2p is also called Rad25p). |
2008-05-13 | Added | DEFINITION | One of several protein complexes involved in nucleotide-excision repair; possesses endodeoxynuclease and DNA helicase activities. In S. cerevisiae, it is composed of Rad2p and the core TFIIH-Ssl2p complex (Core TFIIH is composed of Rad3p, Tfb1p, Tfb2p, Ssl1p, and Tfb4p. Note that Ssl2p is also called Rad25p). |
2008-05-12 | Deleted | DEFINITION | One of several protein complexes involved in nucleotide-excision repair; possesses endodeoxynuclease and DNA helicase activities. In S. cerevisiae, it is composed of Rad2p and the core TFIIH-Ssl2p complex (Core TFIIH is composed of Rad3p, Tfb1p, Tfb2p, Ssl1p, and Tfb4p. Note that Ssl2p is also called Rad25p). |
2007-08-09 | Deleted | SYNONYM | NEF3 complex |
2007-08-09 | Added | SYNONYM | NEF3 complex |
2007-07-27 | Updated | DEFINITION | One of several protein complexes involved in nucleotide-excision repair; possesses endodeoxynuclease and DNA helicase activities. In S. cerevisiae, it is composed of Rad2p and the core TFIIH-Ssl2p complex (Core TFIIH is composed of Rad3p, Tfb1p, Tfb2p, Ssl1p, and Tfb4p. Note that Ssl2p is also called Rad25p). |
2007-03-06 | Updated | DEFINITION | One of several protein complexes involved in nucleotide-excision repair; possesses endodeoxynuclease and DNA helicase activities. In S. cerevisiae, it is composed of Rad2p and the core TFIIH-Ssl2p complex (Core TFIIH is composed of Rad3, Tfb1, Tfb2, Ssl1, and Tfb4. Note that Ssl2p is also called Rad25). |
2005-09-30 | Updated | DEFINITION | One of several protein complexes involved in nucleotide-excision repair; possesses endodeoxynuclease and DNA helicase activities. |
2004-03-23 | Added | DEFINITION | One of several protein complexes involved in nucleotide excision repair; possesses endodeoxynuclease and DNA helicase activities. |
2004-03-18 | Deleted | SYNONYM | NEF3 |
2004-03-18 | Added | SYNONYM | NEF3 complex |
2001-03-30 | Added | SYNONYM | NEF3 |
Timestamp | Action | Category | Detail |
---|---|---|---|
2008-04-01 | Updated | RELATION | is a GO:0000109 (nucleotide-excision repair complex) |
Timestamp | Action | Category | Detail |
---|
Timestamp | Action | Category | Detail |
---|---|---|---|
2024-09-05 | Added | CONSTRAINT | in_taxon NCBITaxon:2759 (Eukaryota) |
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