GO:0006565
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L-serine catabolic process
Biological Process
Definition (GO:0006565 GONUTS page)
The chemical reactions and pathways resulting in the breakdown of L-serine, the L-enantiomer of serine, i.e. (2S)-2-amino-3-hydroxypropanoic acid.
Synonyms
Synonyms are alternative words or phrases closely related in meaning to the term name, with indication of the relationship between the name and synonym given by the synonym scope.
Synonym | Type |
---|---|
L-serine degradation | exact |
L-serine catabolism | exact |
L-serine breakdown | exact |
Ancestor Chart
Ancestor chart for GO:0006565
Cross-references
Database | ID | Description |
---|---|---|
MetaCyc | SERDEG-PWY |
Cross-Ontology Relations
Relation | Other Ontology | ID | Term |
---|---|---|---|
has_primary_input | CHEBI | CHEBI:33384 | L-serine zwitterion |
Co-occurring Terms
These tables show the number of times the term listed in the table has been co-annotated.
No co-occurrence statistics for GO:0006565 based on ALL annotations
The top 100 of 286 co-occurring terms
Co-occurring Term | PR | S% | #Together | #Compared |
---|---|---|---|---|
L-serine catabolic process
|
2,178.03 | 100.00 | 90,979 | 90,979 |
threonine deaminase activity
|
2,142.45 | 97.92 | 90,555 | 92,059 |
L-serine ammonia-lyase activity
|
1,389.28 | 63.70 | 90,790 | 142,335 |
threonine catabolic process
|
1,288.69 | 58.96 | 90,436 | 152,847 |
isoleucine biosynthetic process
|
464.53 | 21.31 | 90,640 | 424,980 |
threonine synthase activity
|
877.51 | 17.05 | 20,749 | 51,500 |
alpha-amino acid metabolic process
|
252.94 | 7.61 | 16,459 | 141,727 |
threonine biosynthetic process
|
186.05 | 6.46 | 19,082 | 223,392 |
amino acid metabolic process
|
93.17 | 3.85 | 25,089 | 586,483 |
pyridoxal phosphate binding
|
64.86 | 2.91 | 52,431 | 1,760,728 |
Totals | 691032 | 42530116 |
No co-occurrence statistics for GO:0006565 based on MANUAL annotations
The top 96 of 96 co-occurring terms
Co-occurring Term | PR | S% | #Together | #Compared |
---|---|---|---|---|
L-serine catabolic process
|
8,606.91 | 100.00 | 164 | 164 |
L-serine ammonia-lyase activity
|
4,275.69 | 48.13 | 154 | 310 |
L-serine metabolic process
|
1,405.21 | 3.90 | 8 | 49 |
cellular response to tetrahydrofolate
|
8,606.91 | 3.05 | 5 | 5 |
threonine deaminase activity
|
526.95 | 2.98 | 9 | 147 |
serine binding
|
2,689.66 | 2.86 | 5 | 16 |
purine nucleobase biosynthetic process
|
2,049.26 | 2.78 | 5 | 21 |
glycine metabolic process
|
796.94 | 2.35 | 5 | 54 |
pyruvate biosynthetic process
|
1,434.48 | 2.17 | 4 | 24 |
small molecule binding
|
524.81 | 2.07 | 5 | 82 |
Totals | 619 | 807158 |
Change Log
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- Definition / Synonyms
- Definition / Synonyms
- Relationships
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- Cross-references
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Timestamp | Action | Category | Detail |
---|---|---|---|
2022-12-24 | Deleted | RELATION | is a GO:0009063 (amino acid catabolic process) |
2020-11-03 | Added | RELATION | is a GO:0009063 (amino acid catabolic process) |
2020-02-28 | Deleted | XREF | MIPS_funcat:01.01.09.02.02 |
2019-05-04 | Added | XREF | MIPS_funcat:01.01.09.02.02 |
2016-11-28 | Deleted | RELATION | is a GO:0009063 (amino acid catabolic process) |
2016-06-22 | Added | RELATION | is a GO:0009063 (amino acid catabolic process) |
2013-06-20 | Deleted | RELATION | is a GO:1901606 (alpha-amino acid catabolic process) |
2012-11-10 | Added | RELATION | is a GO:1901606 (alpha-amino acid catabolic process) |
2009-01-12 | Deleted | DEFINITION | The chemical reactions and pathways resulting in the breakdown of L-serine, the L-configuration stereoisomer of serine, i.e. (2S)-2-amino-3-hydroxypropanoic acid. |
2009-01-12 | Added | DEFINITION | The chemical reactions and pathways resulting in the breakdown of L-serine, the L-enantiomer of serine, i.e. (2S)-2-amino-3-hydroxypropanoic acid. |
Timestamp | Action | Category | Detail |
---|---|---|---|
2007-01-15 | Updated | TERM | L-serine catabolic process |
2003-08-30 | Updated | TERM | L-serine catabolism |
2002-02-06 | Updated | TERM | serine catabolism |
2001-04-03 | Updated | TERM | serine catabolism |
2001-03-30 | Added | TERM | serine catabolism |
Timestamp | Action | Category | Detail |
---|---|---|---|
2009-01-12 | Deleted | DEFINITION | The chemical reactions and pathways resulting in the breakdown of L-serine, the L-configuration stereoisomer of serine, i.e. (2S)-2-amino-3-hydroxypropanoic acid. |
2009-01-12 | Added | DEFINITION | The chemical reactions and pathways resulting in the breakdown of L-serine, the L-enantiomer of serine, i.e. (2S)-2-amino-3-hydroxypropanoic acid. |
2008-12-08 | Deleted | DEFINITION | The chemical reactions and pathways resulting in the breakdown of L-serine, the levorotatory isomer of 2-amino-3-hydroxypropanoic acid. |
2008-12-08 | Added | DEFINITION | The chemical reactions and pathways resulting in the breakdown of L-serine, the L-configuration stereoisomer of serine, i.e. (2S)-2-amino-3-hydroxypropanoic acid. |
2008-05-13 | Added | DEFINITION | The chemical reactions and pathways resulting in the breakdown of L-serine, the levorotatory isomer of 2-amino-3-hydroxypropanoic acid. |
2008-05-12 | Deleted | DEFINITION | The chemical reactions and pathways resulting in the breakdown of L-serine, the levorotatory isomer of 2-amino-3-hydroxypropanoic acid. |
2007-08-09 | Added | SYNONYM | L-serine breakdown |
2007-08-09 | Added | SYNONYM | L-serine catabolism |
2007-08-09 | Added | SYNONYM | L-serine degradation |
2007-08-09 | Deleted | SYNONYM | L-serine breakdown |
2007-08-09 | Deleted | SYNONYM | L-serine degradation |
2007-08-09 | Deleted | SYNONYM | L-serine catabolism |
2007-01-15 | Added | SYNONYM | L-serine catabolism |
2006-05-04 | Updated | DEFINITION | The chemical reactions and pathways resulting in the breakdown of L-serine, the levorotatory isomer of 2-amino-3-hydroxypropanoic acid. |
2005-08-10 | Added | SYNONYM | L-serine degradation |
2005-08-10 | Added | SYNONYM | L-serine breakdown |
2003-08-30 | Updated | DEFINITION | The breakdown into simpler components of L-serine, the levorotatory isomer of 2-amino-3-hydroxypropanoic acid. |
2002-11-27 | Added | DEFINITION | The breakdown into simpler components of serine, 2-amino-3-hydroxypropanoic acid. |
Timestamp | Action | Category | Detail |
---|---|---|---|
2022-12-24 | Deleted | RELATION | is a GO:0009063 (amino acid catabolic process) |
2020-11-03 | Added | RELATION | is a GO:0009063 (amino acid catabolic process) |
2016-11-28 | Deleted | RELATION | is a GO:0009063 (amino acid catabolic process) |
2016-06-22 | Added | RELATION | is a GO:0009063 (amino acid catabolic process) |
2013-06-20 | Deleted | RELATION | is a GO:1901606 (alpha-amino acid catabolic process) |
2012-11-10 | Added | RELATION | is a GO:1901606 (alpha-amino acid catabolic process) |
2008-04-01 | Updated | RELATION | is a GO:0009071 (serine family amino acid catabolic process) |
2008-04-01 | Updated | RELATION | is a GO:0006563 (L-serine metabolic process) |
Timestamp | Action | Category | Detail |
---|---|---|---|
2020-02-28 | Deleted | XREF | MIPS_funcat:01.01.09.02.02 |
2019-05-04 | Added | XREF | MIPS_funcat:01.01.09.02.02 |
2003-10-27 | Added | XREF | MetaCyc:SERDEG-PWY |
Timestamp | Action | Category | Detail |
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