This term is obsolete.

GO:0009416 JSON

response to light stimulus

Biological Process

Definition (GO:0009416 GONUTS page)

Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a light stimulus, electromagnetic radiation of wavelengths classified as infrared, visible or ultraviolet light.

268,273 annotations

Ancestor Chart

Ancestor chart for GO:0009416
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Ancestor chart

Child Terms

This table lists all terms that are direct descendants (child terms) of GO:0009416

Child Term Relationship to
GO:0009416
photoperiodism
is_a
phototaxis
is_a
response to red or far red light
is_a
energy quenching
is_a
response to blue light
is_a
response to light intensity
is_a
response to UV
is_a
visual behavior
is_a
de-etiolation
is_a
photoprotection
is_a

Annotation Guidance

Usage of this term is subject to the following annotation guidelines:

Response to guidelines Link

Annotation Blacklist

This list aims to correct incorrect annotations to UniProtKB accessions inferred from electronic annotation (IEA) methods that are supplied by the UniProt-GOA project to the GO Consortium:

Category Entity Type Entity ID Taxon ID Entity Name Ancestor GO ID Reason Rule/Method ID
NOT-qualified manual protein F4JZY1 3702 CIP1_ARATH GO:0009416 1 NOT-qualified manual annotation exists with evidence code ECO:0000270 from this reference: PMID:7753789
NOT-qualified manual protein O22914 3702 CP121_ARATH GO:0009416 2 NOT-qualified manual annotations exist with evidence code ECO:0000270 from these references: PMID:15533878, PMID:18974062
NOT-qualified manual protein P08735 4577 G3PC1_MAIZE GO:0009416 1 NOT-qualified manual annotation exists with evidence code ECO:0000270 from this reference: PMID:2535522
NOT-qualified manual protein P27788 4577 FER3_MAIZE GO:0009416 1 NOT-qualified manual annotation exists with evidence code ECO:0000270 from this reference: PMID:16668188
NOT-qualified manual protein Q9C9K2 3702 CP123_ARATH GO:0009416 1 NOT-qualified manual annotation exists with evidence code ECO:0000270 from this reference: PMID:18974062

Cross-references

Database ID Description
InterPro IPR009396 Pigment-dispersing hormone
InterPro IPR034581 Protein PLASTID TRANSCRIPTIONALLY ACTIVE 12

Cross-Ontology Relations

Relation Other Ontology ID Term
has_primary_input CHEBI CHEBI:30212 photon

Co-occurring Terms

These tables show the number of times the term listed in the table has been co-annotated.

No co-occurrence statistics for GO:0009416 based on ALL annotations
The top 100 of 2,422 co-occurring terms
Co-occurring Term PR S% #Together #Compared
response to light stimulus
5,258.61 100.00 37,682 37,682
deoxyribodipyrimidine photo-lyase activity
2,708.99 40.28 24,444 47,450
obsolete organic cyclic compound binding
2,230.05 30.65 19,784 46,652
mRNA transcription
4,292.32 11.79 4,562 5,589
nucleobase-containing compound metabolic process
296.21 5.36 19,786 351,264
response to stress
246.70 4.50 19,791 421,857
melatonin biosynthetic process
2,404.53 3.25 1,273 2,784
aralkylamine N-acetyltransferase activity
2,139.12 3.24 1,283 3,154
circadian rhythm
422.62 3.21 1,912 23,791
FAD binding
161.20 3.02 24,734 806,870
Totals 203070 7993065
No co-occurrence statistics for GO:0009416 based on MANUAL annotations
The top 100 of 2,066 co-occurring terms
Co-occurring Term PR S% #Together #Compared
response to light stimulus
514.22 100.00 2,745 2,745
photosynthesis, light harvesting in photosystem I
510.90 39.10 1,076 1,083
mRNA transcription
467.73 17.64 493 542
chloroplast thylakoid membrane
125.43 14.27 702 2,878
gibberellin biosynthetic process
286.02 12.05 366 658
gibberellin 2-beta-dioxygenase activity
395.21 9.52 269 350
gibberellin catabolic process
388.55 9.50 269 356
gibberellin 20-oxidase activity
505.96 8.91 245 249
flower development
335.12 8.59 247 379
unidimensional cell growth
248.78 8.42 254 525
Totals 8554 151135

GO Slims

This term is present in the following GO Consortium-maintained GO slims:

GO slim name Total Number of Terms in Slim
goslim_plant 97

Change Log

Timestamp Action Category Detail
2020-02-28 Deleted XREF MIPS_funcat:34.11.01
2020-02-28 Deleted XREF MIPS_funcat:34.11.01.01
2020-02-28 Deleted XREF MIPS_funcat:36.20.35.11
2019-05-04 Added XREF MIPS_funcat:34.11.01.01
2019-05-04 Added XREF MIPS_funcat:36.20.35.11
2019-05-04 Added XREF MIPS_funcat:34.11.01
2019-04-26 Added SUBSET goslim_plant
2011-05-08 Deleted DEFINITION A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a light stimulus, electromagnetic radiation of wavelengths classified as infrared, visible or ultraviolet light.
2011-05-08 Added DEFINITION Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a light stimulus, electromagnetic radiation of wavelengths classified as infrared, visible or ultraviolet light.
2008-05-13 Added DEFINITION A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a light stimulus, electromagnetic radiation of wavelengths classified as infrared, visible or ultraviolet light.
Timestamp Action Category Detail
2005-09-19 Updated TERM response to light stimulus
2002-10-12 Updated TERM response to light
2002-02-06 Updated TERM light response
2001-04-03 Updated TERM light response
2001-03-30 Added TERM light response
Timestamp Action Category Detail
2011-05-08 Deleted DEFINITION A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a light stimulus, electromagnetic radiation of wavelengths classified as infrared, visible or ultraviolet light.
2011-05-08 Added DEFINITION Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a light stimulus, electromagnetic radiation of wavelengths classified as infrared, visible or ultraviolet light.
2008-05-13 Added DEFINITION A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a light stimulus, electromagnetic radiation of wavelengths classified as infrared, visible or ultraviolet light.
2008-05-12 Deleted DEFINITION A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a light stimulus, electromagnetic radiation of wavelengths classified as infrared, visible or ultraviolet light.
2005-12-24 Updated DEFINITION A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a light stimulus, electromagnetic radiation of wavelengths classified as infrared, visible or ultraviolet light.
2005-09-28 Deleted SYNONYM response to visible light stimulus
2005-09-23 Updated DEFINITION A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a light stimulus.
2005-09-20 Updated DEFINITION A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a light stimulus. Visible light is electromagnetic radiation with a wavelength between 400nm and 700nm and can be detected by the human eye.
2005-09-19 Added SYNONYM response to visible light stimulus
2005-09-17 Updated DEFINITION A change in state or activity of the organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of perception of, or exposure to, a visible light stimulus. Visible light is electromagnetic radiation with a wavelength between 400nm and 700nm and can be detected by the human eye.
2005-09-15 Updated DEFINITION A change in state or activity of the organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of perception of, or exposure to, a light stimulus.
2003-04-16 Updated DEFINITION A change in state or activity of the organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of the perception of a light stimulus.
2002-11-27 Updated DEFINITION A change in state or activity of the organism (in terms of movement, secretion, enzyme production, gene expression etc.) as a result of the perception of a light stimulus.
2001-08-06 Added DEFINITION A change in state or activity of the organism (in terms of movement, secretion, enzyme production, changes in gene expression etc) as a result of the perception of a light stimulus.
Timestamp Action Category Detail
2008-04-01 Updated RELATION is a GO:0009314 (response to radiation)
Timestamp Action Category Detail
2020-02-28 Deleted XREF MIPS_funcat:34.11.01
2020-02-28 Deleted XREF MIPS_funcat:34.11.01.01
2020-02-28 Deleted XREF MIPS_funcat:36.20.35.11
2019-05-04 Added XREF MIPS_funcat:34.11.01.01
2019-05-04 Added XREF MIPS_funcat:36.20.35.11
2019-05-04 Added XREF MIPS_funcat:34.11.01
Timestamp Action Category Detail
2019-04-26 Added SUBSET goslim_plant
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