GO:0009416
JSON
response to light stimulus
Biological Process
Definition (GO:0009416 GONUTS page)
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a light stimulus, electromagnetic radiation of wavelengths classified as infrared, visible or ultraviolet light.
Ancestor Chart
Child Terms
This table lists all terms that are direct descendants (child terms) of GO:0009416
Child Term | Relationship to GO:0009416 |
---|---|
photoperiodism
|
is_a |
phototaxis
|
is_a |
response to red or far red light
|
is_a |
energy quenching
|
is_a |
response to blue light
|
is_a |
response to light intensity
|
is_a |
response to UV
|
is_a |
visual behavior
|
is_a |
de-etiolation
|
is_a |
photoprotection
|
is_a |
Annotation Guidance
Usage of this term is subject to the following annotation guidelines:
Response to guidelines | Link |
Annotation Blacklist
This list aims to correct incorrect annotations to UniProtKB accessions inferred from electronic annotation (IEA) methods that are supplied by the UniProt-GOA project to the GO Consortium:
Category | Entity Type | Entity ID | Taxon ID | Entity Name | Ancestor GO ID | Reason | Rule/Method ID |
---|---|---|---|---|---|---|---|
NOT-qualified manual | protein | F4JZY1 | 3702 | CIP1_ARATH | GO:0009416 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000270 from this reference: PMID:7753789 | |
NOT-qualified manual | protein | O22914 | 3702 | CP121_ARATH | GO:0009416 | 2 NOT-qualified manual annotations exist with evidence code ECO:0000270 from these references: PMID:15533878, PMID:18974062 | |
NOT-qualified manual | protein | P08735 | 4577 | G3PC1_MAIZE | GO:0009416 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000270 from this reference: PMID:2535522 | |
NOT-qualified manual | protein | P27788 | 4577 | FER3_MAIZE | GO:0009416 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000270 from this reference: PMID:16668188 | |
NOT-qualified manual | protein | Q9C9K2 | 3702 | CP123_ARATH | GO:0009416 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000270 from this reference: PMID:18974062 |
Cross-references
Database | ID | Description |
---|---|---|
InterPro | IPR009396 | Pigment-dispersing hormone |
InterPro | IPR034581 | Protein PLASTID TRANSCRIPTIONALLY ACTIVE 12 |
Cross-Ontology Relations
Relation | Other Ontology | ID | Term |
---|---|---|---|
has_primary_input | CHEBI | CHEBI:30212 | photon |
Co-occurring Terms
These tables show the number of times the term listed in the table has been co-annotated.
No co-occurrence statistics for GO:0009416 based on ALL annotations
The top 100 of 2,422 co-occurring terms
Co-occurring Term | PR | S% | #Together | #Compared |
---|---|---|---|---|
response to light stimulus
|
5,258.61 | 100.00 | 37,682 | 37,682 |
deoxyribodipyrimidine photo-lyase activity
|
2,708.99 | 40.28 | 24,444 | 47,450 |
obsolete organic cyclic compound binding
|
2,230.05 | 30.65 | 19,784 | 46,652 |
mRNA transcription
|
4,292.32 | 11.79 | 4,562 | 5,589 |
nucleobase-containing compound metabolic process
|
296.21 | 5.36 | 19,786 | 351,264 |
response to stress
|
246.70 | 4.50 | 19,791 | 421,857 |
melatonin biosynthetic process
|
2,404.53 | 3.25 | 1,273 | 2,784 |
aralkylamine N-acetyltransferase activity
|
2,139.12 | 3.24 | 1,283 | 3,154 |
circadian rhythm
|
422.62 | 3.21 | 1,912 | 23,791 |
FAD binding
|
161.20 | 3.02 | 24,734 | 806,870 |
Totals | 203070 | 7993065 |
No co-occurrence statistics for GO:0009416 based on MANUAL annotations
The top 100 of 2,066 co-occurring terms
Co-occurring Term | PR | S% | #Together | #Compared |
---|---|---|---|---|
response to light stimulus
|
514.22 | 100.00 | 2,745 | 2,745 |
photosynthesis, light harvesting in photosystem I
|
510.90 | 39.10 | 1,076 | 1,083 |
mRNA transcription
|
467.73 | 17.64 | 493 | 542 |
chloroplast thylakoid membrane
|
125.43 | 14.27 | 702 | 2,878 |
gibberellin biosynthetic process
|
286.02 | 12.05 | 366 | 658 |
gibberellin 2-beta-dioxygenase activity
|
395.21 | 9.52 | 269 | 350 |
gibberellin catabolic process
|
388.55 | 9.50 | 269 | 356 |
gibberellin 20-oxidase activity
|
505.96 | 8.91 | 245 | 249 |
flower development
|
335.12 | 8.59 | 247 | 379 |
unidimensional cell growth
|
248.78 | 8.42 | 254 | 525 |
Totals | 8554 | 151135 |
GO Slims
This term is present in the following GO Consortium-maintained GO slims:
GO slim name | Total Number of Terms in Slim |
---|---|
goslim_plant | 97 |
Change Log
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- Definition / Synonyms
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Timestamp | Action | Category | Detail |
---|---|---|---|
2020-02-28 | Deleted | XREF | MIPS_funcat:34.11.01 |
2020-02-28 | Deleted | XREF | MIPS_funcat:34.11.01.01 |
2020-02-28 | Deleted | XREF | MIPS_funcat:36.20.35.11 |
2019-05-04 | Added | XREF | MIPS_funcat:34.11.01.01 |
2019-05-04 | Added | XREF | MIPS_funcat:36.20.35.11 |
2019-05-04 | Added | XREF | MIPS_funcat:34.11.01 |
2019-04-26 | Added | SUBSET | goslim_plant |
2011-05-08 | Deleted | DEFINITION | A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a light stimulus, electromagnetic radiation of wavelengths classified as infrared, visible or ultraviolet light. |
2011-05-08 | Added | DEFINITION | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a light stimulus, electromagnetic radiation of wavelengths classified as infrared, visible or ultraviolet light. |
2008-05-13 | Added | DEFINITION | A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a light stimulus, electromagnetic radiation of wavelengths classified as infrared, visible or ultraviolet light. |
Timestamp | Action | Category | Detail |
---|---|---|---|
2005-09-19 | Updated | TERM | response to light stimulus |
2002-10-12 | Updated | TERM | response to light |
2002-02-06 | Updated | TERM | light response |
2001-04-03 | Updated | TERM | light response |
2001-03-30 | Added | TERM | light response |
Timestamp | Action | Category | Detail |
---|---|---|---|
2011-05-08 | Deleted | DEFINITION | A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a light stimulus, electromagnetic radiation of wavelengths classified as infrared, visible or ultraviolet light. |
2011-05-08 | Added | DEFINITION | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a light stimulus, electromagnetic radiation of wavelengths classified as infrared, visible or ultraviolet light. |
2008-05-13 | Added | DEFINITION | A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a light stimulus, electromagnetic radiation of wavelengths classified as infrared, visible or ultraviolet light. |
2008-05-12 | Deleted | DEFINITION | A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a light stimulus, electromagnetic radiation of wavelengths classified as infrared, visible or ultraviolet light. |
2005-12-24 | Updated | DEFINITION | A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a light stimulus, electromagnetic radiation of wavelengths classified as infrared, visible or ultraviolet light. |
2005-09-28 | Deleted | SYNONYM | response to visible light stimulus |
2005-09-23 | Updated | DEFINITION | A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a light stimulus. |
2005-09-20 | Updated | DEFINITION | A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a light stimulus. Visible light is electromagnetic radiation with a wavelength between 400nm and 700nm and can be detected by the human eye. |
2005-09-19 | Added | SYNONYM | response to visible light stimulus |
2005-09-17 | Updated | DEFINITION | A change in state or activity of the organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of perception of, or exposure to, a visible light stimulus. Visible light is electromagnetic radiation with a wavelength between 400nm and 700nm and can be detected by the human eye. |
2005-09-15 | Updated | DEFINITION | A change in state or activity of the organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of perception of, or exposure to, a light stimulus. |
2003-04-16 | Updated | DEFINITION | A change in state or activity of the organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of the perception of a light stimulus. |
2002-11-27 | Updated | DEFINITION | A change in state or activity of the organism (in terms of movement, secretion, enzyme production, gene expression etc.) as a result of the perception of a light stimulus. |
2001-08-06 | Added | DEFINITION | A change in state or activity of the organism (in terms of movement, secretion, enzyme production, changes in gene expression etc) as a result of the perception of a light stimulus. |
Timestamp | Action | Category | Detail |
---|---|---|---|
2008-04-01 | Updated | RELATION | is a GO:0009314 (response to radiation) |
Timestamp | Action | Category | Detail |
---|---|---|---|
2020-02-28 | Deleted | XREF | MIPS_funcat:34.11.01 |
2020-02-28 | Deleted | XREF | MIPS_funcat:34.11.01.01 |
2020-02-28 | Deleted | XREF | MIPS_funcat:36.20.35.11 |
2019-05-04 | Added | XREF | MIPS_funcat:34.11.01.01 |
2019-05-04 | Added | XREF | MIPS_funcat:36.20.35.11 |
2019-05-04 | Added | XREF | MIPS_funcat:34.11.01 |
Timestamp | Action | Category | Detail |
---|---|---|---|
2019-04-26 | Added | SUBSET | goslim_plant |
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