GO:0009536
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plastid
Cellular Component
Definition (GO:0009536 GONUTS page)
Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid.
Ancestor Chart
Child Terms
This table lists all terms that are direct descendants (child terms) of GO:0009536
Child Term | Relationship to GO:0009536 |
---|---|
plastid nucleoid
|
part_of |
plastid ribosome
|
part_of |
amyloplast
|
is_a |
chloroplast
|
is_a |
plastid chromosome packaging
|
occurs_in |
plastid ADPG pyrophosphorylase complex
|
part_of |
plastid envelope
|
part_of |
plastid outer membrane
|
part_of |
chromoplast
|
is_a |
plastid chromosome
|
part_of |
Taxon Constraints
The use of this term should conform to the following taxon constraints:
Ancestor GO ID | Ancestor GO Term Name | Relationship | Taxon ID | Taxon | Reference(s) |
---|---|---|---|---|---|
GO:0009536 | plastid | Never in Taxon | 2 | Bacteria | |
GO:0009536 | plastid | Never in Taxon | 2157 | Archaea | |
GO:0009536 | plastid | Never in Taxon | 28009 | Choanoflagellata | |
GO:0009536 | plastid | Never in Taxon | 33208 | Metazoa | |
GO:0009536 | plastid | Never in Taxon | 4751 | Fungi | |
GO:0009536 | plastid | Never in Taxon | 554915 | Amoebozoa | |
GO:0009536 | plastid | Only in Taxon | 131567 | cellular organisms |
More information on taxon constraints in GO is available here
Annotation Blacklist
This list aims to correct incorrect annotations to UniProtKB accessions inferred from electronic annotation (IEA) methods that are supplied by the UniProt-GOA project to the GO Consortium:
Category | Entity Type | Entity ID | Taxon ID | Entity Name | Ancestor GO ID | Reason | Rule/Method ID |
---|---|---|---|---|---|---|---|
NOT-qualified manual | protein | A0A096MJ18 | 10116 | A0A096MJ18_RAT | GO:0005737 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | A0A096MK97 | 10116 | A0A096MK97_RAT | GO:0005737 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | A0A0D1E8X3 | 5270 | A0A0D1E8X3_MYCMD | GO:0005737 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000318 from this reference: GO_REF:0000033 | |
NOT-qualified manual | protein | A0A0G2JZ79 | 10116 | SIR1_RAT | GO:0005737 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | A0A1L8G9S0 | 8355 | A0A1L8G9S0_XENLA | GO:0005737 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000318 from this reference: GO_REF:0000033 | |
NOT-qualified manual | protein | A0A1S4L3K3 | 6945 | A0A1S4L3K3_IXOSC | GO:0005737 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000318 from this reference: GO_REF:0000033 | |
NOT-qualified manual | protein | A0A1W2Q633 | 10116 | A0A1W2Q633_RAT | GO:0005737 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | A0A2K5ATM2 | 6239 | A0A2K5ATM2_CAEEL | GO:0005737 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000318 from this reference: GO_REF:0000033 | |
NOT-qualified manual | protein | A0A2K5ATM9 | 6239 | A0A2K5ATM9_CAEEL | GO:0005737 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000318 from this reference: GO_REF:0000033 | |
NOT-qualified manual | protein | A0A2K5ATP6 | 6239 | A0A2K5ATP6_CAEEL | GO:0005737 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000318 from this reference: GO_REF:0000033 |
Cross-references
Database | ID | Description |
---|---|---|
InterPro | IPR034563 | Protein PALE CRESS |
UniProtKB-KW | KW-0934 | Plastid |
UniProtKB-SubCell | SL-0209 | Plastid |
Wikipedia | Plastid |
Replaces
This term can be used instead of these obsolete terms:
GO Identifier | GO Term Name | Reason |
---|---|---|
GO:0044435 | obsolete plastid part | consider GO:0009536 |
Co-occurring Terms
These tables show the number of times the term listed in the table has been co-annotated.
No co-occurrence statistics for GO:0009536 based on ALL annotations
The top 100 of 2,939 co-occurring terms
Co-occurring Term | PR | S% | #Together | #Compared |
---|---|---|---|---|
|
519.32 | 100.00 | 381,567 | 381,567 |
|
97.42 | 14.22 | 141,316 | 753,300 |
|
91.07 | 12.65 | 119,223 | 679,866 |
|
177.46 | 11.09 | 53,842 | 157,562 |
|
125.72 | 10.25 | 57,621 | 238,025 |
|
111.53 | 10.04 | 60,571 | 282,029 |
|
63.39 | 8.88 | 93,774 | 768,223 |
|
49.58 | 8.52 | 168,418 | 1,763,901 |
|
161.85 | 7.92 | 36,605 | 117,454 |
|
307.62 | 7.68 | 30,950 | 52,250 |
Totals | 2937340 | 96090048 |
No co-occurrence statistics for GO:0009536 based on MANUAL annotations
The top 100 of 1,149 co-occurring terms
Co-occurring Term | PR | S% | #Together | #Compared |
---|---|---|---|---|
|
864.91 | 100.00 | 1,632 | 1,632 |
|
135.73 | 7.12 | 188 | 1,198 |
|
248.43 | 4.42 | 81 | 282 |
|
46.58 | 3.46 | 144 | 2,674 |
|
67.27 | 3.36 | 91 | 1,170 |
|
80.39 | 3.29 | 79 | 850 |
|
192.56 | 3.21 | 59 | 265 |
|
691.93 | 3.16 | 52 | 65 |
|
167.82 | 2.81 | 52 | 268 |
|
26.25 | 2.72 | 342 | 11,269 |
Totals | 4579 | 349382 |
GO Slims
This term is present in the following GO Consortium-maintained GO slims:
GO slim name | Total Number of Terms in Slim |
---|---|
goslim_pir | 438 |
goslim_plant | 97 |
goslim_generic | 141 |
goslim_chembl | 296 |
goslim_plant_ribbon | 62 |
Change Log
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Timestamp | Action | Category | Detail |
---|---|---|---|
2024-09-05 | Added | CONSTRAINT | in_taxon NCBITaxon:131567 (cellular organisms) |
2024-03-21 | Added | SUBSET | goslim_plant_ribbon |
2020-02-28 | Deleted | XREF | MIPS_funcat:70.26 |
2019-09-12 | Added | RELATION | part of GO:0005737 (cytoplasm) |
2019-09-12 | Deleted | RELATION | is a GO:0044444 (obsolete cytoplasmic part) |
2019-05-04 | Added | XREF | MIPS_funcat:70.26 |
2018-02-01 | Updated | CONSTRAINT | never_in_taxon NCBITaxon:33208 (Metazoa) |
2018-02-01 | Updated | CONSTRAINT | never_in_taxon NCBITaxon:4751 (Fungi) |
2018-02-01 | Updated | CONSTRAINT | never_in_taxon NCBITaxon:554915 (Amoebozoa) |
2018-02-01 | Updated | CONSTRAINT | never_in_taxon NCBITaxon:28009 (Choanoflagellata) |
Timestamp | Action | Category | Detail |
---|---|---|---|
2002-02-06 | Updated | TERM | plastid |
2001-04-03 | Updated | TERM | plastid |
2001-03-30 | Added | TERM | plastid |
Timestamp | Action | Category | Detail |
---|---|---|---|
2008-05-13 | Added | DEFINITION | Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid. |
2008-05-12 | Deleted | DEFINITION | Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid. |
2003-04-17 | Updated | DEFINITION | Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid. |
2002-11-27 | Updated | DEFINITION | Any member of a family of organelles found in the cytoplasm of eukaryotic plants, all of which contain DNA, are bounded by a double membrane and develop from a common type, the proplastid. |
2001-08-06 | Added | DEFINITION | Any member of a family of oranelles found in the cytoplasm of eukaryotic plants, all of which contain DNA, are bounded by a double membrane and develop from a common type, the proplastid. |
Timestamp | Action | Category | Detail |
---|---|---|---|
2019-09-12 | Added | RELATION | part of GO:0005737 (cytoplasm) |
2019-09-12 | Deleted | RELATION | is a GO:0044444 (obsolete cytoplasmic part) |
2015-11-15 | Added | RELATION | has part GO:0097693 (ocelloid) |
2008-04-01 | Updated | RELATION | is a GO:0044444 (obsolete cytoplasmic part) |
2008-04-01 | Updated | RELATION | is a GO:0043231 (intracellular membrane-bounded organelle) |
Timestamp | Action | Category | Detail |
---|---|---|---|
2020-02-28 | Deleted | XREF | MIPS_funcat:70.26 |
2019-05-04 | Added | XREF | MIPS_funcat:70.26 |
2009-02-08 | Added | XREF | Wikipedia:Plastid |
Timestamp | Action | Category | Detail |
---|---|---|---|
2024-09-05 | Added | CONSTRAINT | in_taxon NCBITaxon:131567 (cellular organisms) |
2024-03-21 | Added | SUBSET | goslim_plant_ribbon |
2018-02-01 | Updated | CONSTRAINT | never_in_taxon NCBITaxon:33208 (Metazoa) |
2018-02-01 | Updated | CONSTRAINT | never_in_taxon NCBITaxon:4751 (Fungi) |
2018-02-01 | Updated | CONSTRAINT | never_in_taxon NCBITaxon:554915 (Amoebozoa) |
2018-02-01 | Updated | CONSTRAINT | never_in_taxon NCBITaxon:28009 (Choanoflagellata) |
2015-12-09 | Added | CONSTRAINT | never_in_taxon NCBITaxon:33208 (Metazoa) |
2015-12-09 | Added | CONSTRAINT | never_in_taxon NCBITaxon:554915 (Amoebozoa) |
2015-12-09 | Added | CONSTRAINT | never_in_taxon NCBITaxon:4751 (Fungi) |
2015-12-09 | Added | CONSTRAINT | never_in_taxon NCBITaxon:28009 (Choanoflagellata) |
2015-12-09 | Added | CONSTRAINT | never_in_taxon NCBITaxon:2157 (Archaea) |
2015-12-09 | Added | CONSTRAINT | never_in_taxon NCBITaxon:2 (Bacteria) |
2015-05-19 | Deleted | SUBSET | goslim_ChEMBL |
2015-05-19 | Added | SUBSET | goslim_chembl |
2015-05-11 | Added | SUBSET | goslim_ChEMBL |
2013-04-18 | Updated | SUBSET | goslim_plant |
2013-04-18 | Updated | SUBSET | goslim_pir |
2013-04-18 | Updated | SUBSET | goslim_generic |
2008-06-09 | Added | SUBSET | goslim_generic |
2008-06-09 | Added | SUBSET | goslim_pir |
2008-06-09 | Added | SUBSET | goslim_plant |
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