GO:0015979
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photosynthesis
Biological Process
Definition (GO:0015979 GONUTS page)
The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds.
Ancestor Chart
Child Terms
This table lists all terms that are direct descendants (child terms) of GO:0015979
Child Term | Relationship to GO:0015979 |
---|---|
photosynthetic membrane
|
capable_of_part_of |
photosynthesis, light reaction
|
part_of |
photosynthesis, dark reaction
|
part_of |
regulation of photosynthesis
|
regulates |
photosystem
|
capable_of_part_of |
positive regulation of photosynthesis
|
positively_regulates |
negative regulation of photosynthesis
|
negatively_regulates |
Taxon Constraints
The use of this term should conform to the following taxon constraints:
Ancestor GO ID | Ancestor GO Term Name | Relationship | Taxon ID | Taxon | Reference(s) |
---|---|---|---|---|---|
GO:0015979 | photosynthesis | Never in Taxon | 33208 | Metazoa | |
GO:0015979 | photosynthesis | Never in Taxon | 4895 | Schizosaccharomyces |
More information on taxon constraints in GO is available here
Annotation Blacklist
This list aims to correct incorrect annotations to UniProtKB accessions inferred from electronic annotation (IEA) methods that are supplied by the UniProt-GOA project to the GO Consortium:
Category | Entity Type | Entity ID | Taxon ID | Entity Name | Ancestor GO ID | Reason | Rule/Method ID |
---|---|---|---|---|---|---|---|
NOT-qualified manual | protein | Q9SVV6 | 3702 | KCO6_ARATH | GO:0015979 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000315 from this reference: PMID:31053658 | |
UniProt COMMENT_CAUTION | protein | B0YPL7 | 280810 | PETN_ANEMR | GO:0015979 | This organism being non-photosynthetic, the role of this protein is uncertain | |
UniProt COMMENT_CAUTION | protein | B0YPM6 | 280810 | PSB30_ANEMR | GO:0015979 | This organism being non-photosynthetic, the role of this protein is uncertain | |
UniProt COMMENT_CAUTION | protein | B0YPM8 | 280810 | PSBI_ANEMR | GO:0015979 | This organism being non-photosynthetic, the role of this protein is uncertain | |
UniProt COMMENT_CAUTION | protein | B0YPN1 | 280810 | PSBA_ANEMR | GO:0015979 | This organism being non-photosynthetic, the role of this protein is uncertain | |
UniProt COMMENT_CAUTION | protein | B0YPN8 | 280810 | RBL_ANEMR | GO:0015979 | This organism being non-photosynthetic, the role of this protein is uncertain | |
UniProt COMMENT_CAUTION | protein | B0YPP4 | 280810 | PSBL_ANEMR | GO:0015979 | This organism being non-photosynthetic, the role of this protein is uncertain | |
UniProt COMMENT_CAUTION | protein | B0YPP7 | 280810 | PETG_ANEMR | GO:0015979 | This organism being non-photosynthetic, the role of this protein is uncertain | |
UniProt COMMENT_CAUTION | protein | B0YPP8 | 280810 | PSAJ_ANEMR | GO:0015979 | This organism being non-photosynthetic, the role of this protein is uncertain | |
UniProt COMMENT_CAUTION | protein | B0YPQ4 | 280810 | PSBN_ANEMR | GO:0015979 | This organism being non-photosynthetic, the role of this protein is uncertain |
Cross-references
Database | ID | Description |
---|---|---|
InterPro | IPR000549 | Photosystem I reaction center subunit V/PsaK |
InterPro | IPR001056 | Photosystem II reaction centre protein H |
InterPro | IPR001280 | Photosystem I PsaA/PsaB |
InterPro | IPR001297 | Phycobilisome linker domain |
InterPro | IPR001302 | Photosystem I reaction centre subunit VIII |
InterPro | IPR001470 | Bacteriochlorophyll c-binding protein |
InterPro | IPR001743 | Photosystem II PsbT |
InterPro | IPR002325 | Cytochrome f |
InterPro | IPR002615 | Photosystem I PsaJ, reaction centre subunit IX |
InterPro | IPR002644 | Photosystem II PsbZ, reaction centre |
Co-occurring Terms
These tables show the number of times the term listed in the table has been co-annotated.
No co-occurrence statistics for GO:0015979 based on ALL annotations
The top 100 of 1,260 co-occurring terms
Co-occurring Term | PR | S% | #Together | #Compared |
---|---|---|---|---|
photosynthesis
|
259.69 | 100.00 | 750,658 | 750,658 |
thylakoid
|
158.32 | 43.82 | 457,286 | 750,100 |
chloroplast thylakoid membrane
|
149.61 | 37.03 | 382,058 | 663,181 |
photosystem II
|
256.90 | 36.67 | 276,344 | 279,342 |
chloroplast
|
82.27 | 28.44 | 551,980 | 1,742,437 |
reductive pentose-phosphate cycle
|
229.62 | 21.10 | 162,927 | 184,266 |
carbon fixation
|
189.71 | 20.77 | 168,815 | 231,085 |
ribulose-bisphosphate carboxylase activity
|
200.91 | 20.02 | 159,659 | 206,366 |
photorespiration
|
245.10 | 18.87 | 143,291 | 151,820 |
chlorophyll binding
|
257.98 | 17.18 | 129,108 | 129,966 |
Totals | 6574616 | 168438918 |
No co-occurrence statistics for GO:0015979 based on MANUAL annotations
The top 100 of 183 co-occurring terms
Co-occurring Term | PR | S% | #Together | #Compared |
---|---|---|---|---|
photosynthesis
|
5,026.46 | 100.00 | 257 | 257 |
diphosphate-fructose-6-phosphate 1-phosphotransferase activity
|
4,994.84 | 61.24 | 158 | 159 |
response to glucose
|
1,272.93 | 21.76 | 156 | 616 |
thylakoid
|
211.03 | 2.17 | 11 | 262 |
chloroplast thylakoid
|
99.86 | 1.28 | 9 | 453 |
nonphotochemical quenching
|
655.62 | 1.08 | 3 | 23 |
stromule
|
376.98 | 1.02 | 3 | 40 |
NADPH dehydrogenase activity
|
327.81 | 1.00 | 3 | 46 |
response to high light intensity
|
239.36 | 0.95 | 3 | 63 |
plastoglobule
|
239.36 | 0.95 | 3 | 63 |
Totals | 819 | 31372 |
GO Slims
This term is present in the following GO Consortium-maintained GO slims:
GO slim name | Total Number of Terms in Slim |
---|---|
goslim_metagenomics | 111 |
goslim_generic | 141 |
goslim_pir | 439 |
goslim_plant | 97 |
goslim_prokaryote | 97 |
goslim_chembl | 296 |
goslim_prokaryote_ribbon | 49 |
goslim_plant_ribbon | 62 |
Change Log
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Timestamp | Action | Category | Detail |
---|---|---|---|
2024-09-18 | Deleted | RELATION | is a GO:0044237 (obsolete cellular metabolic process) |
2024-09-18 | Added | RELATION | is a GO:0008152 (metabolic process) |
2024-03-21 | Added | SUBSET | goslim_plant_ribbon |
2024-02-24 | Added | SUBSET | goslim_prokaryote_ribbon |
2023-12-15 | Added | SUBSET | goslim_prokaryote |
2020-02-28 | Deleted | XREF | MIPS_funcat:02.30 |
2019-05-04 | Added | XREF | MIPS_funcat:02.30 |
2016-10-29 | Added | CONSTRAINT | never_in_taxon NCBITaxon:4895 (Schizosaccharomyces) |
2015-12-09 | Added | CONSTRAINT | never_in_taxon NCBITaxon:33208 (Metazoa) |
2015-05-19 | Deleted | SUBSET | goslim_ChEMBL |
Timestamp | Action | Category | Detail |
---|---|---|---|
2002-02-06 | Updated | TERM | photosynthesis |
2001-04-03 | Updated | TERM | photosynthesis |
2001-03-30 | Added | TERM | photosynthesis |
Timestamp | Action | Category | Detail |
---|---|---|---|
2008-05-13 | Added | DEFINITION | The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds. |
2008-05-12 | Deleted | DEFINITION | The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds. |
2003-10-23 | Updated | DEFINITION | The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds. |
2002-11-27 | Added | DEFINITION | The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide using energy obtained from light rather than from the oxidation of chemical compounds. |
Timestamp | Action | Category | Detail |
---|---|---|---|
2024-09-18 | Deleted | RELATION | is a GO:0044237 (obsolete cellular metabolic process) |
2024-09-18 | Added | RELATION | is a GO:0008152 (metabolic process) |
2008-04-01 | Updated | RELATION | is a GO:0044237 (obsolete cellular metabolic process) |
Timestamp | Action | Category | Detail |
---|---|---|---|
2020-02-28 | Deleted | XREF | MIPS_funcat:02.30 |
2019-05-04 | Added | XREF | MIPS_funcat:02.30 |
2009-03-29 | Added | XREF | Wikipedia:Photosynthesis |
Timestamp | Action | Category | Detail |
---|---|---|---|
2024-03-21 | Added | SUBSET | goslim_plant_ribbon |
2024-02-24 | Added | SUBSET | goslim_prokaryote_ribbon |
2023-12-15 | Added | SUBSET | goslim_prokaryote |
2016-10-29 | Added | CONSTRAINT | never_in_taxon NCBITaxon:4895 (Schizosaccharomyces) |
2015-12-09 | Added | CONSTRAINT | never_in_taxon NCBITaxon:33208 (Metazoa) |
2015-05-19 | Deleted | SUBSET | goslim_ChEMBL |
2015-05-19 | Added | SUBSET | goslim_chembl |
2015-05-11 | Added | SUBSET | goslim_ChEMBL |
2013-04-18 | Updated | SUBSET | goslim_plant |
2013-04-18 | Updated | SUBSET | goslim_generic |
2013-04-18 | Updated | SUBSET | goslim_pir |
2013-04-18 | Updated | SUBSET | goslim_metagenomics |
2012-02-17 | Added | SUBSET | goslim_metagenomics |
2010-12-05 | Added | SUBSET | goslim_generic |
2008-06-09 | Added | SUBSET | goslim_pir |
2008-06-09 | Added | SUBSET | goslim_plant |
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