This term is obsolete.

GO:0018057 JSON

peptidyl-lysine oxidation

Biological Process

Definition (GO:0018057 GONUTS page)

The oxidation of the terminal amino-methylene groups of peptidyl-L-lysine or peptidyl-5-hydroxy-L-lysine to aldehyde groups to form allysine or hydroxyallysine residues, respectively; these are intermediates in the formation of covalent cross-links between adjacent polypeptide chains in proteins such as collagens.

Restrictions

This term should not be used for direct annotation.

25 annotations

Ancestor Chart

Ancestor chart for GO:0018057
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Ancestor chart

Cross-references

Database ID Description
RESID AA0121

Co-occurring Terms

These tables show the number of times the term listed in the table has been co-annotated.

No co-occurrence statistics for GO:0018057 based on ALL annotations
The top 84 of 84 co-occurring terms
Co-occurring Term PR S% #Together #Compared
peptidyl-lysine oxidation
9,435,946.00 100.00 21 21
regulation of receptor binding
9,435,946.00 4.76 1 1
negative regulation of stem cell population maintenance
331,085.80 3.38 10 285
ascending aorta development
288,855.50 2.59 3 98
regulation of platelet-derived growth factor receptor-beta signaling pathway
288,855.50 2.59 3 98
descending aorta development
283,078.38 2.54 3 100
protein oxidation
449,330.75 2.44 1 21
fibronectin fibril organization
150,975.14 1.50 4 250
peptide cross-linking
196,582.20 1.47 1 48
negative regulation of T-helper 17 cell lineage commitment
80,305.93 0.82 4 470
Totals 583 159511934
No co-occurrence statistics for GO:0018057 based on MANUAL annotations
The top 77 of 77 co-occurring terms
Co-occurring Term PR S% #Together #Compared
peptidyl-lysine oxidation
67,215.86 100.00 21 21
negative regulation of stem cell population maintenance
11,202.64 14.08 10 60
protein-lysine 6-oxidase activity
8,673.01 12.82 20 155
fibronectin fibril organization
17,924.23 12.50 4 15
negative regulation of T-helper 17 cell lineage commitment
10,754.54 9.52 4 25
ascending aorta development
67,215.86 9.52 2 2
regulation of platelet-derived growth factor receptor-beta signaling pathway
67,215.86 9.52 2 2
platelet-derived growth factor receptor-beta signaling pathway
8,401.98 8.93 5 40
descending aorta development
33,607.93 8.70 2 4
positive regulation of chondrocyte differentiation
4,942.34 6.80 10 136
Totals 430 759653

Change Log

Timestamp Action Category Detail
2024-07-26 Added SUBSET gocheck_obsoletion_candidate
2024-07-26 Deleted SUBSET gocheck_do_not_annotate
2023-06-13 Added SUBSET gocheck_do_not_annotate
2008-05-13 Added DEFINITION The oxidation of the terminal amino-methylene groups of peptidyl-L-lysine or peptidyl-5-hydroxy-L-lysine to aldehyde groups to form allysine or hydroxyallysine residues, respectively; these are intermediates in the formation of covalent cross-links between adjacent polypeptide chains in proteins such as collagens.
2008-05-12 Deleted DEFINITION The oxidation of the terminal amino-methylene groups of peptidyl-L-lysine or peptidyl-5-hydroxy-L-lysine to aldehyde groups to form allysine or hydroxyallysine residues, respectively; these are intermediates in the formation of covalent cross-links between adjacent polypeptide chains in proteins such as collagens.
2008-04-01 Updated RELATION is a GO:0018205 (peptidyl-lysine modification)
2008-04-01 Updated RELATION is a GO:0018158 (protein oxidation)
2005-02-24 Added XREF RESID:AA0121
2002-11-27 Added DEFINITION The oxidation of the terminal amino-methylene groups of peptidyl-L-lysine or peptidyl-5-hydroxy-L-lysine to aldehyde groups to form allysine or hydroxyallysine residues, respectively; these are intermediates in the formation of covalent cross-links between adjacent polypeptide chains in proteins such as collagens.
2001-10-01 Added TERM peptidyl-lysine oxidation
Timestamp Action Category Detail
2001-10-01 Added TERM peptidyl-lysine oxidation
Timestamp Action Category Detail
2008-05-13 Added DEFINITION The oxidation of the terminal amino-methylene groups of peptidyl-L-lysine or peptidyl-5-hydroxy-L-lysine to aldehyde groups to form allysine or hydroxyallysine residues, respectively; these are intermediates in the formation of covalent cross-links between adjacent polypeptide chains in proteins such as collagens.
2008-05-12 Deleted DEFINITION The oxidation of the terminal amino-methylene groups of peptidyl-L-lysine or peptidyl-5-hydroxy-L-lysine to aldehyde groups to form allysine or hydroxyallysine residues, respectively; these are intermediates in the formation of covalent cross-links between adjacent polypeptide chains in proteins such as collagens.
2002-11-27 Added DEFINITION The oxidation of the terminal amino-methylene groups of peptidyl-L-lysine or peptidyl-5-hydroxy-L-lysine to aldehyde groups to form allysine or hydroxyallysine residues, respectively; these are intermediates in the formation of covalent cross-links between adjacent polypeptide chains in proteins such as collagens.
Timestamp Action Category Detail
2008-04-01 Updated RELATION is a GO:0018205 (peptidyl-lysine modification)
2008-04-01 Updated RELATION is a GO:0018158 (protein oxidation)
Timestamp Action Category Detail
2005-02-24 Added XREF RESID:AA0121
Timestamp Action Category Detail
2024-07-26 Added SUBSET gocheck_obsoletion_candidate
2024-07-26 Deleted SUBSET gocheck_do_not_annotate
2023-06-13 Added SUBSET gocheck_do_not_annotate
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