GO:0019028
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viral capsid
Cellular Component
Definition (GO:0019028 GONUTS page)
The protein coat that surrounds the infective nucleic acid in some virus particles. It comprises numerous regularly arranged subunits, or capsomeres.
Secondary IDs
GO:0046728
Ancestor Chart
Ancestor chart for GO:0019028
Child Terms
This table lists all terms that are direct descendants (child terms) of GO:0019028
Child Term | Relationship to GO:0019028 |
---|---|
capsomere
|
part_of |
viral capsid, decoration
|
part_of |
helical viral capsid
|
is_a |
viral portal complex
|
part_of |
icosahedral viral capsid
|
is_a |
viral nucleocapsid
|
part_of |
viral scaffold
|
part_of |
Taxon Constraints
The use of this term should conform to the following taxon constraints:
Ancestor GO ID | Ancestor GO Term Name | Relationship | Taxon ID | Taxon | Reference(s) |
---|---|---|---|---|---|
GO:0019028 | viral capsid | Never in Taxon | 131567 | cellular organisms |
More information on taxon constraints in GO is available here
Cross-references
Database | ID | Description |
---|---|---|
InterPro | IPR000052 | Potex/carlavirus coat protein |
InterPro | IPR000143 | Geminivirus MSV 27Kd coat protein |
InterPro | IPR000145 | Outer capsid protein VP5, Orbivirus |
InterPro | IPR000247 | Cucumovirus coat protein |
InterPro | IPR000263 | Geminivirus AR1/BR1 coat protein |
InterPro | IPR000416 | Haemagglutinin outer capsid protein VP4, concanavalin-like domain |
InterPro | IPR000574 | Tymovirus coat protein |
InterPro | IPR000646 | Pre-hexon-linking protein VIII |
InterPro | IPR000650 | Geminivirus AR1 coat protein |
InterPro | IPR000662 | Capsid protein VP1,Polyomavirus |
Co-occurring Terms
These tables show the number of times the term listed in the table has been co-annotated.
No co-occurrence statistics for GO:0019028 based on ALL annotations
The top 100 of 425 co-occurring terms
Co-occurring Term | PR | S% | #Together | #Compared |
---|---|---|---|---|
viral capsid
|
478.75 | 100.00 | 407,181 | 407,181 |
structural molecule activity
|
129.71 | 23.25 | 252,878 | 933,382 |
host cell endoplasmic reticulum
|
196.10 | 14.74 | 76,190 | 186,009 |
host cell
|
154.18 | 14.11 | 81,733 | 253,788 |
viral process
|
182.53 | 13.48 | 70,270 | 184,312 |
host cell cytoplasm
|
91.72 | 13.10 | 119,325 | 622,822 |
host cell nucleus
|
80.52 | 12.52 | 133,941 | 796,350 |
virion attachment to host cell
|
74.80 | 11.96 | 137,505 | 880,065 |
symbiont entry into host cell
|
53.32 | 9.57 | 164,498 | 1,476,999 |
symbiont-mediated suppression of host innate immune response
|
183.82 | 9.34 | 44,721 | 116,475 |
Totals | 3298905 | 49179237 |
No co-occurrence statistics for GO:0019028 based on MANUAL annotations
The top 55 of 55 co-occurring terms
Co-occurring Term | PR | S% | #Together | #Compared |
---|---|---|---|---|
viral capsid
|
26,363.25 | 100.00 | 49 | 49 |
viral DNA strand displacement replication
|
17,575.50 | 11.54 | 6 | 9 |
viral RNA genome packaging
|
13,181.62 | 10.91 | 6 | 12 |
host cell Golgi apparatus
|
7,908.97 | 9.52 | 6 | 20 |
viral DNA genome replication
|
4,652.34 | 7.79 | 6 | 34 |
negative regulation of interferon-beta production
|
2,137.56 | 5.13 | 6 | 74 |
host cell endoplasmic reticulum-Golgi intermediate compartment
|
26,363.24 | 4.08 | 2 | 2 |
viral procapsid maturation
|
17,575.50 | 4.00 | 2 | 3 |
T=7 icosahedral viral capsid
|
10,545.30 | 3.85 | 2 | 5 |
host cell perinuclear region of cytoplasm
|
6,590.81 | 3.64 | 2 | 8 |
Totals | 164 | 431842 |
GO Slims
This term is present in the following GO Consortium-maintained GO slims:
GO slim name | Total Number of Terms in Slim |
---|---|
goslim_virus | 23 |
goslim_chembl | 296 |
Change Log
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Timestamp | Action | Category | Detail |
---|---|---|---|
2024-09-05 | Added | CONSTRAINT | never_in_taxon NCBITaxon:131567 (cellular organisms) |
2024-07-04 | Added | SUBSET | goslim_virus |
2015-05-19 | Deleted | SUBSET | goslim_ChEMBL |
2015-05-19 | Added | SUBSET | goslim_chembl |
2015-05-11 | Added | SUBSET | goslim_ChEMBL |
2009-08-13 | Deleted | SYNONYM | viral capsid (sensu Retroviridae) |
2009-02-08 | Added | XREF | Wikipedia:Capsid |
2008-05-13 | Added | DEFINITION | The protein coat that surrounds the infective nucleic acid in some virus particles. It comprises numerous regularly arranged subunits, or capsomeres. |
2008-05-12 | Deleted | DEFINITION | The protein coat that surrounds the infective nucleic acid in some virus particles. It comprises numerous regularly arranged subunits, or capsomeres. |
2008-04-01 | Updated | RELATION | is a GO:0044423 (virion component) |
Timestamp | Action | Category | Detail |
---|---|---|---|
2001-10-01 | Added | TERM | viral capsid |
Timestamp | Action | Category | Detail |
---|---|---|---|
2009-08-13 | Deleted | SYNONYM | viral capsid (sensu Retroviridae) |
2008-05-13 | Added | DEFINITION | The protein coat that surrounds the infective nucleic acid in some virus particles. It comprises numerous regularly arranged subunits, or capsomeres. |
2008-05-12 | Deleted | DEFINITION | The protein coat that surrounds the infective nucleic acid in some virus particles. It comprises numerous regularly arranged subunits, or capsomeres. |
2007-08-09 | Deleted | SYNONYM | viral capsid (sensu Retroviridae) |
2007-08-09 | Added | SYNONYM | viral capsid (sensu Retroviridae) |
2007-02-12 | Added | SYNONYM | viral capsid (sensu Retroviridae) |
2002-11-27 | Added | DEFINITION | The protein coat that surrounds the infective nucleic acid in some virus particles. It comprises numerous regularly arranged subunits, or capsomeres. |
Timestamp | Action | Category | Detail |
---|---|---|---|
2008-04-01 | Updated | RELATION | is a GO:0044423 (virion component) |
Timestamp | Action | Category | Detail |
---|---|---|---|
2009-02-08 | Added | XREF | Wikipedia:Capsid |
Timestamp | Action | Category | Detail |
---|---|---|---|
2024-09-05 | Added | CONSTRAINT | never_in_taxon NCBITaxon:131567 (cellular organisms) |
2024-07-04 | Added | SUBSET | goslim_virus |
2015-05-19 | Deleted | SUBSET | goslim_ChEMBL |
2015-05-19 | Added | SUBSET | goslim_chembl |
2015-05-11 | Added | SUBSET | goslim_ChEMBL |
2007-02-12 | Added | SECONDARY | GO:0046728 (viral capsid (sensu Retroviridae)) |
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