GO:0019083
JSON
viral transcription
Biological Process
Definition (GO:0019083 GONUTS page)
The process by which a viral genome, or part of a viral genome, is transcribed within the host cell.
Ancestor Chart
Child Terms
This table lists all terms that are direct descendants (child terms) of GO:0019083
Child Term | Relationship to GO:0019083 |
---|---|
middle viral transcription
|
is_a |
late viral transcription
|
is_a |
regulation of viral transcription
|
regulates |
viral RNA editing
|
part_of |
positive regulation by host of viral transcription
|
positively_regulates |
early viral transcription
|
is_a |
positive regulation of viral transcription
|
positively_regulates |
negative regulation by host of viral transcription
|
negatively_regulates |
RNA-templated viral transcription
|
is_a |
modulation by host of viral transcription
|
negatively_regulates |
GO Discussions
The GO editorial group is intending to improve the information provided in this area of the GO. If you would like to be involved in discussions regarding this development activity, please email the GO Consortium. Please note that it is still appropriate to use this term for curation or analysis purpose:
Ontology Development Project | |
---|---|
Viral Processes | Link |
Taxon Constraints
The use of this term should conform to the following taxon constraints:
Ancestor GO ID | Ancestor GO Term Name | Relationship | Taxon ID | Taxon | Reference(s) |
---|---|---|---|---|---|
GO:0019083 | viral transcription | Never in Taxon | 4896 | Schizosaccharomyces pombe |
More information on taxon constraints in GO is available here
Cross-references
Database | ID | Description |
---|---|---|
InterPro | IPR004259 | Phosphoprotein M1-like |
InterPro | IPR004283 | Late expression factor 2 |
InterPro | IPR004973 | DNA-directed RNA polymerase, 18kDa subunit, poxviral |
InterPro | IPR005059 | DNA-directed RNA polymerase, 35kDa subunit, poxviral |
InterPro | IPR007786 | Late expression factor 9 |
InterPro | IPR007937 | RNA polymerase, 22kDa subunit, poxviral |
InterPro | IPR037199 | Phosphoprotein, C-terminal |
UniProtKB-KW | KW-1195 | Viral transcription |
Co-occurring Terms
These tables show the number of times the term listed in the table has been co-annotated.
No co-occurrence statistics for GO:0019083 based on ALL annotations
The top 100 of 216 co-occurring terms
Co-occurring Term | PR | S% | #Together | #Compared |
---|---|---|---|---|
viral transcription
|
1,420.18 | 100.00 | 137,263 | 137,263 |
symbiont-mediated suppression of host mRNA transcription via inhibition of RNA polymerase II activity
|
946.52 | 64.44 | 130,554 | 195,887 |
symbiont-mediated suppression of host gene expression
|
664.71 | 45.71 | 130,555 | 278,939 |
host cell mitochondrion
|
880.67 | 36.77 | 65,157 | 105,073 |
viral RNA genome replication
|
510.60 | 34.96 | 127,176 | 353,725 |
RNA-templated transcription
|
502.28 | 34.36 | 126,772 | 358,442 |
RNA-dependent RNA polymerase activity
|
502.26 | 34.36 | 126,772 | 358,456 |
7-methylguanosine mRNA capping
|
753.06 | 33.44 | 65,209 | 122,977 |
cap snatching
|
711.48 | 32.25 | 65,203 | 130,151 |
host cell nucleus
|
234.17 | 16.37 | 131,307 | 796,350 |
Totals | 1690746 | 54163863 |
No co-occurrence statistics for GO:0019083 based on MANUAL annotations
The top 71 of 71 co-occurring terms
Co-occurring Term | PR | S% | #Together | #Compared |
---|---|---|---|---|
viral transcription
|
80,737.44 | 100.00 | 16 | 16 |
protein acetylation
|
12,559.16 | 12.96 | 7 | 45 |
transcriptional start site selection at RNA polymerase II promoter
|
8,073.74 | 8.86 | 7 | 70 |
viral nucleocapsid
|
9,498.52 | 6.45 | 2 | 17 |
symbiont-mediated suppression of host antigen processing and presentation of peptide antigen via MHC class II
|
80,737.44 | 6.25 | 1 | 1 |
RNA replication
|
80,737.44 | 6.25 | 1 | 1 |
suppression by virus of host cytokine production
|
40,368.72 | 5.88 | 1 | 2 |
double membrane vesicle viral factory outer membrane
|
20,184.36 | 5.26 | 1 | 4 |
RNA polymerase II core complex assembly
|
4,381.10 | 5.07 | 7 | 129 |
symbiont-mediated suppression of host defenses
|
16,147.49 | 5.00 | 1 | 5 |
Totals | 200 | 346048 |
GO Slims
This term is present in the following GO Consortium-maintained GO slims:
GO slim name | Total Number of Terms in Slim |
---|---|
goslim_virus | 23 |
Change Log
- All changes
- All changes
- Term
- Term
- Definition / Synonyms
- Definition / Synonyms
- Relationships
- Relationships
- Cross-references
- Cross-references
- Other
- Other
Timestamp | Action | Category | Detail |
---|---|---|---|
2024-09-05 | Added | CONSTRAINT | never_in_taxon NCBITaxon:4896 (Schizosaccharomyces pombe) |
2024-06-07 | Added | SUBSET | goslim_virus |
2018-08-27 | Deleted | SUBSET | goslim_virus |
2017-05-12 | Deleted | RELATION | is a GO:0032774 (RNA biosynthetic process) |
2017-05-12 | Added | RELATION | is a GO:0016032 (viral process) |
2014-03-07 | Added | SUBSET | goslim_virus |
2013-10-30 | Added | DEFINITION | The process by which a viral genome, or part of a viral genome, is transcribed within the host cell. |
2013-10-30 | Deleted | DEFINITION | The process by which a viral genome is transcribed into messenger RNA (mRNA) within the host cell. |
2013-07-13 | Added | DEFINITION | The process by which a viral genome is transcribed into messenger RNA (mRNA) within the host cell. |
2013-07-13 | Deleted | DEFINITION | The mechanisms involved in viral gene transcription, especially referring to those with temporal properties unique to viral transcription. |
Timestamp | Action | Category | Detail |
---|---|---|---|
2001-10-01 | Added | TERM | viral transcription |
Timestamp | Action | Category | Detail |
---|---|---|---|
2013-10-30 | Added | DEFINITION | The process by which a viral genome, or part of a viral genome, is transcribed within the host cell. |
2013-10-30 | Deleted | DEFINITION | The process by which a viral genome is transcribed into messenger RNA (mRNA) within the host cell. |
2013-07-13 | Added | DEFINITION | The process by which a viral genome is transcribed into messenger RNA (mRNA) within the host cell. |
2013-07-13 | Deleted | DEFINITION | The mechanisms involved in viral gene transcription, especially referring to those with temporal properties unique to viral transcription. |
2008-05-13 | Added | DEFINITION | The mechanisms involved in viral gene transcription, especially referring to those with temporal properties unique to viral transcription. |
2008-05-12 | Deleted | DEFINITION | The mechanisms involved in viral gene transcription, especially referring to those with temporal properties unique to viral transcription. |
2002-11-27 | Added | DEFINITION | The mechanisms involved in viral gene transcription, especially referring to those with temporal properties unique to viral transcription. |
Timestamp | Action | Category | Detail |
---|---|---|---|
2017-05-12 | Deleted | RELATION | is a GO:0032774 (RNA biosynthetic process) |
2017-05-12 | Added | RELATION | is a GO:0016032 (viral process) |
2013-07-13 | Deleted | RELATION | is a GO:0048610 (obsolete cellular process involved in reproduction) |
2011-03-18 | Added | RELATION | is a GO:0032774 (RNA biosynthetic process) |
2011-03-18 | Deleted | RELATION | is a GO:0006350 (transcription) |
2010-10-01 | Added | RELATION | is a GO:0048610 (obsolete cellular process involved in reproduction) |
2010-02-27 | Added | RELATION | is a GO:0006350 (transcription) |
2010-02-27 | Deleted | RELATION | is a GO:0061023 (mRNA transcription) |
2010-02-10 | Added | RELATION | is a GO:0061023 (mRNA transcription) |
2010-02-10 | Deleted | RELATION | is a GO:0009299 (mRNA transcription) |
2008-04-01 | Updated | RELATION | is a GO:0009299 (mRNA transcription) |
2008-04-01 | Updated | RELATION | part of GO:0019080 (viral gene expression) |
Timestamp | Action | Category | Detail |
---|
Timestamp | Action | Category | Detail |
---|---|---|---|
2024-09-05 | Added | CONSTRAINT | never_in_taxon NCBITaxon:4896 (Schizosaccharomyces pombe) |
2024-06-07 | Added | SUBSET | goslim_virus |
2018-08-27 | Deleted | SUBSET | goslim_virus |
2014-03-07 | Added | SUBSET | goslim_virus |
Not found :(
Sorry, but the Term you were trying to view does not exist.
Reported error:
It looks like this may have been caused by:
- a mistyped URL
- an out-of-date link