This term is obsolete.

GO:0019877 JSON

diaminopimelate biosynthetic process

Biological Process

Definition (GO:0019877 GONUTS page)

The chemical reactions and pathways resulting in the formation of diaminopimelate, both as an intermediate in lysine biosynthesis and as a component (as meso-diaminopimelate) of the peptidoglycan of Gram-negative bacterial cell walls.

177,515 annotations

Synonyms

Synonyms are alternative words or phrases closely related in meaning to the term name, with indication of the relationship between the name and synonym given by the synonym scope.

Synonym Type
diaminopimelate anabolism exact
diaminopimelate biosynthesis exact
diaminopimelate synthesis exact
diaminopimelate formation exact

Ancestor Chart

Ancestor chart for GO:0019877
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Ancestor chart

Annotation Blacklist

This list aims to correct incorrect annotations to UniProtKB accessions inferred from electronic annotation (IEA) methods that are supplied by the UniProt-GOA project to the GO Consortium:

Category Entity Type Entity ID Taxon ID Entity Name Ancestor GO ID Reason Rule/Method ID
NOT-qualified manual protein P95028 83331 P95028_MYCTO GO:0008610 1 NOT-qualified manual annotation exists with evidence code ECO:0000314 from this reference: PMID:16952959

Cross-references

Database ID Description
InterPro IPR012691 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase variant
UniProtKB-KW KW-0220 Diaminopimelate biosynthesis

Cross-Ontology Relations

Relation Other Ontology ID Term
has_primary_output CHEBI CHEBI:57791 meso-2,6-diaminopimelic acid dizwitterion

Co-occurring Terms

These tables show the number of times the term listed in the table has been co-annotated.

No co-occurrence statistics for GO:0019877 based on ALL annotations
The top 100 of 315 co-occurring terms
Co-occurring Term PR S% #Together #Compared
diaminopimelate biosynthetic process
1,098.90 100.00 177,395 177,395
lysine biosynthetic process
588.50 53.26 175,596 327,889
lysine biosynthetic process via diaminopimelate
515.59 46.72 175,793 374,673
4-hydroxy-tetrahydrodipicolinate reductase
925.90 22.70 42,045 49,901
4-hydroxy-tetrahydrodipicolinate synthase activity
506.78 20.19 46,875 101,644
aspartate-semialdehyde dehydrogenase activity
858.64 19.45 36,482 46,690
oxidoreductase activity, acting on CH or CH2 groups, NAD or NADP as acceptor
1,098.86 18.91 33,540 33,541
'de novo' L-methionine biosynthetic process
417.53 13.98 32,121 84,539
threonine biosynthetic process
217.38 12.32 43,672 220,772
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase activity
986.10 10.34 18,569 20,693
Totals 1592170 213175457
No co-occurrence statistics for GO:0019877 based on MANUAL annotations
The top 20 of 20 co-occurring terms
Co-occurring Term PR S% #Together #Compared
diaminopimelate biosynthetic process
11,136.20 100.00 116 116
4-hydroxy-tetrahydrodipicolinate reductase
11,023.71 83.76 98 99
lysine biosynthetic process
2,930.58 6.94 10 38
N-acetyldiaminopimelate deacetylase activity
11,136.20 4.31 5 5
chloroplast stroma
279.65 2.46 62 2,469
nucleotidyltransferase activity
229.61 1.69 10 485
lysine biosynthetic process via diaminopimelate
201.01 1.29 5 277
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase activity
5,568.10 0.85 1 2
amino acid biosynthetic process
856.63 0.78 1 13
aspartate-semialdehyde dehydrogenase activity
359.23 0.68 1 31
Totals 360 272374

Change Log

Timestamp Action Category Detail
2024-07-13 Deleted RELATION is a GO:1901566 (obsolete organonitrogen compound biosynthetic process)
2024-03-26 Added RELATION is a GO:0008652 (amino acid biosynthetic process)
2024-03-21 Added RELATION is a GO:1901570 (fatty acid derivative biosynthetic process)
2024-03-21 Added RELATION is a GO:1901566 (obsolete organonitrogen compound biosynthetic process)
2020-11-03 Deleted RELATION is a GO:0008652 (amino acid biosynthetic process)
2016-11-28 Added RELATION is a GO:0008652 (amino acid biosynthetic process)
2016-06-22 Deleted RELATION is a GO:0008652 (amino acid biosynthetic process)
2012-11-15 Deleted RELATION is a GO:1901566 (obsolete organonitrogen compound biosynthetic process)
2012-11-15 Added RELATION is a GO:0008652 (amino acid biosynthetic process)
2012-11-05 Deleted RELATION part of GO:0009089 (lysine biosynthetic process via diaminopimelate)
Timestamp Action Category Detail
2007-01-15 Updated TERM diaminopimelate biosynthetic process
2002-01-08 Added TERM diaminopimelate biosynthesis
Timestamp Action Category Detail
2008-05-13 Added DEFINITION The chemical reactions and pathways resulting in the formation of diaminopimelate, both as an intermediate in lysine biosynthesis and as a component (as meso-diaminopimelate) of the peptidoglycan of Gram-negative bacterial cell walls.
2008-05-12 Deleted DEFINITION The chemical reactions and pathways resulting in the formation of diaminopimelate, both as an intermediate in lysine biosynthesis and as a component (as meso-diaminopimelate) of the peptidoglycan of Gram-negative bacterial cell walls.
2007-08-09 Deleted SYNONYM diaminopimelate synthesis
2007-08-09 Deleted SYNONYM diaminopimelate formation
2007-08-09 Deleted SYNONYM diaminopimelate anabolism
2007-08-09 Added SYNONYM diaminopimelate synthesis
2007-08-09 Added SYNONYM diaminopimelate formation
2007-08-09 Added SYNONYM diaminopimelate biosynthesis
2007-08-09 Added SYNONYM diaminopimelate anabolism
2007-08-09 Deleted SYNONYM diaminopimelate biosynthesis
2007-01-15 Added SYNONYM diaminopimelate biosynthesis
2006-05-04 Updated DEFINITION The chemical reactions and pathways resulting in the formation of diaminopimelate, both as an intermediate in lysine biosynthesis and as a component (as meso-diaminopimelate) of the peptidoglycan of Gram-negative bacterial cell walls.
2006-02-16 Updated DEFINITION The formation from simpler components of diaminopimelate, both as an intermediate in lysine biosynthesis and as a component (as meso-diaminopimelate) of the peptidoglycan of Gram-negative bacterial cell walls.
2006-02-11 Updated DEFINITION The formation from simpler components of diaminopimelate, both as an intermediate in lysine biosynthesis and as a component (as meso-diaminopimelate) of the peptidoglycan of Gram negative bacterial cell walls.
2005-08-10 Added SYNONYM diaminopimelate formation
2005-08-10 Added SYNONYM diaminopimelate synthesis
2005-08-10 Added SYNONYM diaminopimelate anabolism
2002-11-27 Added DEFINITION The formation from simpler components of diaminopimelate, both as an intermediate in lysine biosynthesis and as a component (as meso-diaminopimelate) of the peptidoglycan of Gram-negative bacterial cell walls.
Timestamp Action Category Detail
2024-07-13 Deleted RELATION is a GO:1901566 (obsolete organonitrogen compound biosynthetic process)
2024-03-26 Added RELATION is a GO:0008652 (amino acid biosynthetic process)
2024-03-21 Added RELATION is a GO:1901570 (fatty acid derivative biosynthetic process)
2024-03-21 Added RELATION is a GO:1901566 (obsolete organonitrogen compound biosynthetic process)
2020-11-03 Deleted RELATION is a GO:0008652 (amino acid biosynthetic process)
2016-11-28 Added RELATION is a GO:0008652 (amino acid biosynthetic process)
2016-06-22 Deleted RELATION is a GO:0008652 (amino acid biosynthetic process)
2012-11-15 Deleted RELATION is a GO:1901566 (obsolete organonitrogen compound biosynthetic process)
2012-11-15 Added RELATION is a GO:0008652 (amino acid biosynthetic process)
2012-11-05 Deleted RELATION part of GO:0009089 (lysine biosynthetic process via diaminopimelate)
2012-11-05 Added RELATION is a GO:1901566 (obsolete organonitrogen compound biosynthetic process)
2012-11-02 Deleted RELATION is a GO:0046394 (carboxylic acid biosynthetic process)
2012-11-02 Added RELATION is a GO:0043650 (dicarboxylic acid biosynthetic process)
2008-04-01 Updated RELATION is a GO:0046394 (carboxylic acid biosynthetic process)
2008-04-01 Updated RELATION is a GO:0046451 (diaminopimelate metabolic process)
2008-04-01 Updated RELATION part of GO:0009089 (lysine biosynthetic process via diaminopimelate)
Timestamp Action Category Detail
Timestamp Action Category Detail
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