GO:0031119
JSON
tRNA pseudouridine synthesis
Biological Process
Definition (GO:0031119 GONUTS page)
The intramolecular conversion of uridine to pseudouridine in a tRNA molecule.
Ancestor Chart
Ancestor chart for GO:0031119
Child Terms
This table lists all terms that are direct descendants (child terms) of GO:0031119
Child Term | Relationship to GO:0031119 |
---|---|
mitochondrial tRNA pseudouridine synthesis
|
is_a |
Annotation Blacklist
This list aims to correct incorrect annotations to UniProtKB accessions inferred from electronic annotation (IEA) methods that are supplied by the UniProt-GOA project to the GO Consortium:
Category | Entity Type | Entity ID | Taxon ID | Entity Name | Ancestor GO ID | Reason | Rule/Method ID |
---|---|---|---|---|---|---|---|
NOT-qualified manual | protein | F4IL30 | 3702 | POP1_ARATH | GO:0008033 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000315 from this reference: PMID:22549728 | |
NOT-qualified manual | protein | O14133 | 284812 | ATE1_SCHPO | GO:0006399 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000303 from this reference: GO_REF:0000051 | |
NOT-qualified manual | protein | Q9SB36 | 3702 | PP337_ARATH | GO:0009451 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000315 from this reference: PMID:21288264 | |
NOT-qualified manual | protein | Q9ZW76 | 3702 | POP4_ARATH | GO:0008033 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000315 from this reference: PMID:22549728 |
Cross-references
Database | ID | Description |
---|---|---|
InterPro | IPR041708 | Pseudouridine synthase PUS1/ PUS2-like |
Co-occurring Terms
These tables show the number of times the term listed in the table has been co-annotated.
No co-occurrence statistics for GO:0031119 based on ALL annotations
The top 100 of 328 co-occurring terms
Co-occurring Term | PR | S% | #Together | #Compared |
---|---|---|---|---|
tRNA pseudouridine synthesis
|
1,705.46 | 100.00 | 114,303 | 114,303 |
catalytic activity, acting on RNA
|
836.82 | 43.10 | 89,158 | 181,705 |
mRNA pseudouridine synthesis
|
1,347.91 | 39.19 | 49,993 | 63,254 |
pseudouridine synthase activity
|
549.08 | 32.20 | 114,303 | 355,030 |
tRNA pseudouridine(38-40) synthase activity
|
1,680.23 | 32.19 | 36,970 | 37,525 |
tRNA pseudouridine(55) synthase activity
|
1,608.52 | 28.65 | 33,319 | 35,327 |
pseudouridine synthesis
|
490.50 | 28.36 | 108,934 | 378,760 |
RNA processing
|
147.52 | 8.46 | 91,001 | 1,052,040 |
tRNA processing
|
110.02 | 6.45 | 112,779 | 1,748,269 |
tRNA pseudouridine(13) synthase activity
|
1,602.43 | 6.22 | 7,139 | 7,598 |
Totals | 1063249 | 84602875 |
No co-occurrence statistics for GO:0031119 based on MANUAL annotations
The top 52 of 52 co-occurring terms
Co-occurring Term | PR | S% | #Together | #Compared |
---|---|---|---|---|
tRNA pseudouridine synthesis
|
2,171.09 | 100.00 | 595 | 595 |
pseudouridine synthase activity
|
819.15 | 37.73 | 595 | 1,577 |
mRNA pseudouridine synthesis
|
1,142.04 | 33.29 | 283 | 538 |
tRNA pseudouridine synthase activity
|
2,171.09 | 2.69 | 16 | 16 |
pseudouridine synthesis
|
134.93 | 1.45 | 11 | 177 |
primary miRNA binding
|
174.69 | 1.04 | 7 | 87 |
regulation of mesoderm development
|
2,171.09 | 1.01 | 6 | 6 |
regulation of hematopoietic stem cell differentiation
|
183.47 | 0.91 | 6 | 71 |
tRNA pseudouridine(13) synthase activity
|
2,171.09 | 0.84 | 5 | 5 |
tRNA pseudouridine(38/39) synthase activity
|
2,171.09 | 0.84 | 5 | 5 |
Totals | 2057 | 772349 |
Change Log
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Timestamp | Action | Category | Detail |
---|---|---|---|
2008-05-13 | Added | DEFINITION | The intramolecular conversion of uridine to pseudouridine in a tRNA molecule. |
2008-05-12 | Deleted | DEFINITION | The intramolecular conversion of uridine to pseudouridine in a tRNA molecule. |
2008-04-01 | Updated | RELATION | is a GO:0006400 (tRNA modification) |
2008-04-01 | Updated | RELATION | is a GO:0001522 (pseudouridine synthesis) |
2005-01-11 | Added | DEFINITION | The intramolecular conversion of uridine to pseudouridine in a tRNA molecule. |
2005-01-10 | Added | TERM | tRNA pseudouridine synthesis |
Timestamp | Action | Category | Detail |
---|---|---|---|
2005-01-10 | Added | TERM | tRNA pseudouridine synthesis |
Timestamp | Action | Category | Detail |
---|---|---|---|
2008-05-13 | Added | DEFINITION | The intramolecular conversion of uridine to pseudouridine in a tRNA molecule. |
2008-05-12 | Deleted | DEFINITION | The intramolecular conversion of uridine to pseudouridine in a tRNA molecule. |
2005-01-11 | Added | DEFINITION | The intramolecular conversion of uridine to pseudouridine in a tRNA molecule. |
Timestamp | Action | Category | Detail |
---|---|---|---|
2008-04-01 | Updated | RELATION | is a GO:0006400 (tRNA modification) |
2008-04-01 | Updated | RELATION | is a GO:0001522 (pseudouridine synthesis) |
Timestamp | Action | Category | Detail |
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Timestamp | Action | Category | Detail |
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