This term is obsolete.

GO:0031119 JSON

tRNA pseudouridine synthesis

Biological Process

Definition (GO:0031119 GONUTS page)

The intramolecular conversion of uridine to pseudouridine in a tRNA molecule.

114,673 annotations

Ancestor Chart

Ancestor chart for GO:0031119
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Ancestor chart

Child Terms

This table lists all terms that are direct descendants (child terms) of GO:0031119

Child Term Relationship to
GO:0031119
mitochondrial tRNA pseudouridine synthesis
is_a

Annotation Blacklist

This list aims to correct incorrect annotations to UniProtKB accessions inferred from electronic annotation (IEA) methods that are supplied by the UniProt-GOA project to the GO Consortium:

Category Entity Type Entity ID Taxon ID Entity Name Ancestor GO ID Reason Rule/Method ID
NOT-qualified manual protein F4IL30 3702 POP1_ARATH GO:0008033 1 NOT-qualified manual annotation exists with evidence code ECO:0000315 from this reference: PMID:22549728
NOT-qualified manual protein O14133 284812 ATE1_SCHPO GO:0006399 1 NOT-qualified manual annotation exists with evidence code ECO:0000303 from this reference: GO_REF:0000051
NOT-qualified manual protein Q9SB36 3702 PP337_ARATH GO:0009451 1 NOT-qualified manual annotation exists with evidence code ECO:0000315 from this reference: PMID:21288264
NOT-qualified manual protein Q9ZW76 3702 POP4_ARATH GO:0008033 1 NOT-qualified manual annotation exists with evidence code ECO:0000315 from this reference: PMID:22549728

Cross-references

Database ID Description
InterPro IPR041708 Pseudouridine synthase PUS1/ PUS2-like

Co-occurring Terms

These tables show the number of times the term listed in the table has been co-annotated.

No co-occurrence statistics for GO:0031119 based on ALL annotations
The top 100 of 328 co-occurring terms
Co-occurring Term PR S% #Together #Compared
tRNA pseudouridine synthesis
1,705.46 100.00 114,303 114,303
catalytic activity, acting on RNA
836.82 43.10 89,158 181,705
mRNA pseudouridine synthesis
1,347.91 39.19 49,993 63,254
pseudouridine synthase activity
549.08 32.20 114,303 355,030
tRNA pseudouridine(38-40) synthase activity
1,680.23 32.19 36,970 37,525
tRNA pseudouridine(55) synthase activity
1,608.52 28.65 33,319 35,327
pseudouridine synthesis
490.50 28.36 108,934 378,760
RNA processing
147.52 8.46 91,001 1,052,040
tRNA processing
110.02 6.45 112,779 1,748,269
tRNA pseudouridine(13) synthase activity
1,602.43 6.22 7,139 7,598
Totals 1063249 84602875
No co-occurrence statistics for GO:0031119 based on MANUAL annotations
The top 52 of 52 co-occurring terms
Co-occurring Term PR S% #Together #Compared
tRNA pseudouridine synthesis
2,171.09 100.00 595 595
pseudouridine synthase activity
819.15 37.73 595 1,577
mRNA pseudouridine synthesis
1,142.04 33.29 283 538
tRNA pseudouridine synthase activity
2,171.09 2.69 16 16
pseudouridine synthesis
134.93 1.45 11 177
primary miRNA binding
174.69 1.04 7 87
regulation of mesoderm development
2,171.09 1.01 6 6
regulation of hematopoietic stem cell differentiation
183.47 0.91 6 71
tRNA pseudouridine(13) synthase activity
2,171.09 0.84 5 5
tRNA pseudouridine(38/39) synthase activity
2,171.09 0.84 5 5
Totals 2057 772349

Change Log

Timestamp Action Category Detail
2008-05-13 Added DEFINITION The intramolecular conversion of uridine to pseudouridine in a tRNA molecule.
2008-05-12 Deleted DEFINITION The intramolecular conversion of uridine to pseudouridine in a tRNA molecule.
2008-04-01 Updated RELATION is a GO:0006400 (tRNA modification)
2008-04-01 Updated RELATION is a GO:0001522 (pseudouridine synthesis)
2005-01-11 Added DEFINITION The intramolecular conversion of uridine to pseudouridine in a tRNA molecule.
2005-01-10 Added TERM tRNA pseudouridine synthesis
Timestamp Action Category Detail
2005-01-10 Added TERM tRNA pseudouridine synthesis
Timestamp Action Category Detail
2008-05-13 Added DEFINITION The intramolecular conversion of uridine to pseudouridine in a tRNA molecule.
2008-05-12 Deleted DEFINITION The intramolecular conversion of uridine to pseudouridine in a tRNA molecule.
2005-01-11 Added DEFINITION The intramolecular conversion of uridine to pseudouridine in a tRNA molecule.
Timestamp Action Category Detail
2008-04-01 Updated RELATION is a GO:0006400 (tRNA modification)
2008-04-01 Updated RELATION is a GO:0001522 (pseudouridine synthesis)
Timestamp Action Category Detail
Timestamp Action Category Detail
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