This term is obsolete.

GO:0000427 JSON

plastid-encoded plastid RNA polymerase complex

Cellular Component

Definition (GO:0000427 GONUTS page)

An RNA polymerase complex containing polypeptides encoded by the plastid genome. Plastid-encoded DNA-directed RNA polymerases resemble eubacterial multisubunit RNA polymerases, with a core composed of alpha, beta, and beta-prime subunits. Some forms contain multiple additional subunits. An additional sigma factor subunit is required for promoter recognition.

2,074 annotations

Ancestor Chart

Ancestor chart for GO:0000427
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Ancestor chart

Child Terms

This table lists all terms that are direct descendants (child terms) of GO:0000427

Child Term Relationship to
GO:0000427
plastid-encoded plastid RNA polymerase complex B
is_a
plastid-encoded plastid RNA polymerase complex A
is_a

Taxon Constraints

The use of this term should conform to the following taxon constraints:

Ancestor GO ID Ancestor GO Term Name Relationship Taxon ID Taxon Reference(s)
GO:0000427 plastid-encoded plastid RNA polymerase complex Never in Taxon 2 Bacteria
GO:0000427 plastid-encoded plastid RNA polymerase complex Never in Taxon 2157 Archaea
GO:0000427 plastid-encoded plastid RNA polymerase complex Never in Taxon 28009 Choanoflagellata
GO:0000427 plastid-encoded plastid RNA polymerase complex Never in Taxon 33208 Metazoa
GO:0000427 plastid-encoded plastid RNA polymerase complex Never in Taxon 4751 Fungi
GO:0000427 plastid-encoded plastid RNA polymerase complex Never in Taxon 554915 Amoebozoa
GO:0000427 plastid-encoded plastid RNA polymerase complex Only in Taxon 131567 cellular organisms

More information on taxon constraints in GO is available here

Annotation Blacklist

This list aims to correct incorrect annotations to UniProtKB accessions inferred from electronic annotation (IEA) methods that are supplied by the UniProt-GOA project to the GO Consortium:

Category Entity Type Entity ID Taxon ID Entity Name Ancestor GO ID Reason Rule/Method ID
NOT-qualified manual protein A0A096MJ18 10116 A0A096MJ18_RAT GO:0005737 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096
NOT-qualified manual protein A0A096MK97 10116 A0A096MK97_RAT GO:0005737 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096
NOT-qualified manual protein A0A0D1E8X3 237631 A0A0D1E8X3_USTMA GO:0005737 1 NOT-qualified manual annotation exists with evidence code ECO:0000318 from this reference: GO_REF:0000033
NOT-qualified manual protein A0A0G2JZ79 10116 SIR1_RAT GO:0005737 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096
NOT-qualified manual protein A0A1L8G9S0 8355 A0A1L8G9S0_XENLA GO:0005737 1 NOT-qualified manual annotation exists with evidence code ECO:0000318 from this reference: GO_REF:0000033
NOT-qualified manual protein A0A1S4L3K3 6945 A0A1S4L3K3_IXOSC GO:0005737 1 NOT-qualified manual annotation exists with evidence code ECO:0000318 from this reference: GO_REF:0000033
NOT-qualified manual protein A0A1W2Q633 10116 A0A1W2Q633_RAT GO:0005737 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096
NOT-qualified manual protein A0A2K5ATM2 6239 A0A2K5ATM2_CAEEL GO:0005737 1 NOT-qualified manual annotation exists with evidence code ECO:0000318 from this reference: GO_REF:0000033
NOT-qualified manual protein A0A2K5ATM9 6239 A0A2K5ATM9_CAEEL GO:0005737 1 NOT-qualified manual annotation exists with evidence code ECO:0000318 from this reference: GO_REF:0000033
NOT-qualified manual protein A0A2K5ATP6 6239 A0A2K5ATP6_CAEEL GO:0005737 1 NOT-qualified manual annotation exists with evidence code ECO:0000318 from this reference: GO_REF:0000033

Cross-references

Database ID Description
InterPro IPR038958 Protein plastid transcriptionally active 7
InterPro IPR044710 PLASTID TRANSCRIPTIONALLY ACTIVE protein 6
InterPro IPR044967 Protein PLASTID TRANSCRIPTIONALLY ACTIVE 10

Co-occurring Terms

These tables show the number of times the term listed in the table has been co-annotated.

No co-occurrence statistics for GO:0000427 based on ALL annotations
The top 100 of 114 co-occurring terms
Co-occurring Term PR S% #Together #Compared
plastid-encoded plastid RNA polymerase complex
94,860.72 100.00 2,055 2,055
response to cytokinin
21,188.82 5.19 130 582
thylakoid membrane organization
5,723.32 5.03 477 7,906
chloroplast organization
4,022.64 3.82 569 13,418
chloroplast thylakoid
2,301.73 2.26 498 20,524
positive regulation of thermomorphogenesis
50,739.45 2.20 46 86
regulation of plant organ morphogenesis
36,363.28 2.16 46 120
chloroplast nucleoid
2,934.56 2.10 126 4,073
positive regulation of red or far-red light signaling pathway
8,589.75 1.83 46 508
UV protection
4,228.29 1.51 46 1,032
Totals 8691 112916298
No co-occurrence statistics for GO:0000427 based on MANUAL annotations
The top 60 of 60 co-occurring terms
Co-occurring Term PR S% #Together #Compared
plastid-encoded plastid RNA polymerase complex
24,842.29 100.00 52 52
plastid transcription
6,083.83 24.00 48 196
chloroplast thylakoid
2,467.78 9.78 45 453
thylakoid membrane organization
1,846.39 7.33 44 592
chloroplast organization
1,069.66 4.29 49 1,138
protein-lysine N-methyltransferase activity
847.58 3.38 42 1,231
response to cytokinin
937.44 2.60 4 106
chloroplast nucleoid
709.78 2.47 8 280
positive regulation of red or far-red light signaling pathway
24,842.29 1.92 1 1
heteropolysaccharide binding
8,280.76 1.85 1 3
Totals 375 712754

Change Log

Timestamp Action Category Detail
2024-03-05 Added CONSTRAINT in_taxon NCBITaxon:131567 (cellular organisms)
2023-11-01 Added CONSTRAINT never_in_taxon NCBITaxon:554915 (Amoebozoa)
2023-11-01 Added CONSTRAINT never_in_taxon NCBITaxon:2 (Bacteria)
2023-11-01 Added CONSTRAINT never_in_taxon NCBITaxon:28009 (Choanoflagellata)
2023-11-01 Added CONSTRAINT never_in_taxon NCBITaxon:2157 (Archaea)
2023-11-01 Added CONSTRAINT never_in_taxon NCBITaxon:4751 (Fungi)
2023-11-01 Added CONSTRAINT never_in_taxon NCBITaxon:33208 (Metazoa)
2019-09-12 Deleted RELATION is a GO:0044435 (obsolete plastid part)
2015-04-24 Added RELATION part of GO:0009536 (plastid)
2013-02-02 Deleted RELATION part of GO:0009536 (plastid)
Timestamp Action Category Detail
2007-01-22 Added TERM plastid-encoded plastid RNA polymerase complex
Timestamp Action Category Detail
2008-07-31 Deleted DEFINITION Plastid-encoded plastid RNA polymerases are plastid-encoded DNA-directed RNA polymerases that resemble eubacterial multisubunit RNA polymerases with a core composed of alpha, beta, and beta-prime subunits. Some forms contain multiple additional subunits. An additional sigma factor subunit is required for promoter recognition.
2008-07-31 Added DEFINITION An RNA polymerase complex containing polypeptides encoded by the plastid genome. Plastid-encoded DNA-directed RNA polymerases resemble eubacterial multisubunit RNA polymerases, with a core composed of alpha, beta, and beta-prime subunits. Some forms contain multiple additional subunits. An additional sigma factor subunit is required for promoter recognition.
2008-05-13 Added DEFINITION Plastid-encoded plastid RNA polymerases are plastid-encoded DNA-directed RNA polymerases that resemble eubacterial multisubunit RNA polymerases with a core composed of alpha, beta, and beta-prime subunits. Some forms contain multiple additional subunits. An additional sigma factor subunit is required for promoter recognition.
2008-05-12 Deleted DEFINITION Plastid-encoded plastid RNA polymerases are plastid-encoded DNA-directed RNA polymerases that resemble eubacterial multisubunit RNA polymerases with a core composed of alpha, beta, and beta-prime subunits. Some forms contain multiple additional subunits. An additional sigma factor subunit is required for promoter recognition.
2007-01-23 Added DEFINITION Plastid-encoded plastid RNA polymerases are plastid-encoded DNA-directed RNA polymerases that resemble eubacterial multisubunit RNA polymerases with a core composed of alpha, beta, and beta-prime subunits. Some forms contain multiple additional subunits. An additional sigma factor subunit is required for promoter recognition.
Timestamp Action Category Detail
2019-09-12 Deleted RELATION is a GO:0044435 (obsolete plastid part)
2015-04-24 Added RELATION part of GO:0009536 (plastid)
2013-02-02 Deleted RELATION part of GO:0009536 (plastid)
2012-10-29 Added RELATION part of GO:0009536 (plastid)
2008-04-01 Updated RELATION is a GO:0044435 (obsolete plastid part)
2008-04-01 Updated RELATION is a GO:0000428 (DNA-directed RNA polymerase complex)
Timestamp Action Category Detail
Timestamp Action Category Detail
2024-03-05 Added CONSTRAINT in_taxon NCBITaxon:131567 (cellular organisms)
2023-11-01 Added CONSTRAINT never_in_taxon NCBITaxon:554915 (Amoebozoa)
2023-11-01 Added CONSTRAINT never_in_taxon NCBITaxon:2 (Bacteria)
2023-11-01 Added CONSTRAINT never_in_taxon NCBITaxon:28009 (Choanoflagellata)
2023-11-01 Added CONSTRAINT never_in_taxon NCBITaxon:2157 (Archaea)
2023-11-01 Added CONSTRAINT never_in_taxon NCBITaxon:4751 (Fungi)
2023-11-01 Added CONSTRAINT never_in_taxon NCBITaxon:33208 (Metazoa)
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