GO:0000427
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plastid-encoded plastid RNA polymerase complex
Cellular Component
Definition (GO:0000427 GONUTS page)
An RNA polymerase complex containing polypeptides encoded by the plastid genome. Plastid-encoded DNA-directed RNA polymerases resemble eubacterial multisubunit RNA polymerases, with a core composed of alpha, beta, and beta-prime subunits. Some forms contain multiple additional subunits. An additional sigma factor subunit is required for promoter recognition.
Ancestor Chart
Child Terms
This table lists all terms that are direct descendants (child terms) of GO:0000427
Child Term | Relationship to GO:0000427 |
---|---|
plastid-encoded plastid RNA polymerase complex B
|
is_a |
plastid-encoded plastid RNA polymerase complex A
|
is_a |
Taxon Constraints
The use of this term should conform to the following taxon constraints:
Ancestor GO ID | Ancestor GO Term Name | Relationship | Taxon ID | Taxon | Reference(s) |
---|---|---|---|---|---|
GO:0000427 | plastid-encoded plastid RNA polymerase complex | Never in Taxon | 2 | Bacteria | |
GO:0000427 | plastid-encoded plastid RNA polymerase complex | Never in Taxon | 2157 | Archaea | |
GO:0000427 | plastid-encoded plastid RNA polymerase complex | Never in Taxon | 28009 | Choanoflagellata | |
GO:0000427 | plastid-encoded plastid RNA polymerase complex | Never in Taxon | 33208 | Metazoa | |
GO:0000427 | plastid-encoded plastid RNA polymerase complex | Never in Taxon | 4751 | Fungi | |
GO:0000427 | plastid-encoded plastid RNA polymerase complex | Never in Taxon | 554915 | Amoebozoa | |
GO:0000427 | plastid-encoded plastid RNA polymerase complex | Only in Taxon | 131567 | cellular organisms |
More information on taxon constraints in GO is available here
Annotation Blacklist
This list aims to correct incorrect annotations to UniProtKB accessions inferred from electronic annotation (IEA) methods that are supplied by the UniProt-GOA project to the GO Consortium:
Category | Entity Type | Entity ID | Taxon ID | Entity Name | Ancestor GO ID | Reason | Rule/Method ID |
---|---|---|---|---|---|---|---|
NOT-qualified manual | protein | A0A096MJ18 | 10116 | A0A096MJ18_RAT | GO:0005737 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | A0A096MK97 | 10116 | A0A096MK97_RAT | GO:0005737 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | A0A0D1E8X3 | 237631 | A0A0D1E8X3_USTMA | GO:0005737 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000318 from this reference: GO_REF:0000033 | |
NOT-qualified manual | protein | A0A0G2JZ79 | 10116 | SIR1_RAT | GO:0005737 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | A0A1L8G9S0 | 8355 | A0A1L8G9S0_XENLA | GO:0005737 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000318 from this reference: GO_REF:0000033 | |
NOT-qualified manual | protein | A0A1S4L3K3 | 6945 | A0A1S4L3K3_IXOSC | GO:0005737 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000318 from this reference: GO_REF:0000033 | |
NOT-qualified manual | protein | A0A1W2Q633 | 10116 | A0A1W2Q633_RAT | GO:0005737 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | A0A2K5ATM2 | 6239 | A0A2K5ATM2_CAEEL | GO:0005737 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000318 from this reference: GO_REF:0000033 | |
NOT-qualified manual | protein | A0A2K5ATM9 | 6239 | A0A2K5ATM9_CAEEL | GO:0005737 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000318 from this reference: GO_REF:0000033 | |
NOT-qualified manual | protein | A0A2K5ATP6 | 6239 | A0A2K5ATP6_CAEEL | GO:0005737 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000318 from this reference: GO_REF:0000033 |
Cross-references
Database | ID | Description |
---|---|---|
InterPro | IPR038958 | Protein plastid transcriptionally active 7 |
InterPro | IPR044710 | PLASTID TRANSCRIPTIONALLY ACTIVE protein 6 |
InterPro | IPR044967 | Protein PLASTID TRANSCRIPTIONALLY ACTIVE 10 |
Co-occurring Terms
These tables show the number of times the term listed in the table has been co-annotated.
No co-occurrence statistics for GO:0000427 based on ALL annotations
The top 100 of 114 co-occurring terms
Co-occurring Term | PR | S% | #Together | #Compared |
---|---|---|---|---|
plastid-encoded plastid RNA polymerase complex
|
94,860.72 | 100.00 | 2,055 | 2,055 |
response to cytokinin
|
21,188.82 | 5.19 | 130 | 582 |
thylakoid membrane organization
|
5,723.32 | 5.03 | 477 | 7,906 |
chloroplast organization
|
4,022.64 | 3.82 | 569 | 13,418 |
chloroplast thylakoid
|
2,301.73 | 2.26 | 498 | 20,524 |
positive regulation of thermomorphogenesis
|
50,739.45 | 2.20 | 46 | 86 |
regulation of plant organ morphogenesis
|
36,363.28 | 2.16 | 46 | 120 |
chloroplast nucleoid
|
2,934.56 | 2.10 | 126 | 4,073 |
positive regulation of red or far-red light signaling pathway
|
8,589.75 | 1.83 | 46 | 508 |
UV protection
|
4,228.29 | 1.51 | 46 | 1,032 |
Totals | 8691 | 112916298 |
No co-occurrence statistics for GO:0000427 based on MANUAL annotations
The top 60 of 60 co-occurring terms
Co-occurring Term | PR | S% | #Together | #Compared |
---|---|---|---|---|
plastid-encoded plastid RNA polymerase complex
|
24,842.29 | 100.00 | 52 | 52 |
plastid transcription
|
6,083.83 | 24.00 | 48 | 196 |
chloroplast thylakoid
|
2,467.78 | 9.78 | 45 | 453 |
thylakoid membrane organization
|
1,846.39 | 7.33 | 44 | 592 |
chloroplast organization
|
1,069.66 | 4.29 | 49 | 1,138 |
protein-lysine N-methyltransferase activity
|
847.58 | 3.38 | 42 | 1,231 |
response to cytokinin
|
937.44 | 2.60 | 4 | 106 |
chloroplast nucleoid
|
709.78 | 2.47 | 8 | 280 |
positive regulation of red or far-red light signaling pathway
|
24,842.29 | 1.92 | 1 | 1 |
heteropolysaccharide binding
|
8,280.76 | 1.85 | 1 | 3 |
Totals | 375 | 712754 |
Change Log
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Timestamp | Action | Category | Detail |
---|---|---|---|
2024-03-05 | Added | CONSTRAINT | in_taxon NCBITaxon:131567 (cellular organisms) |
2023-11-01 | Added | CONSTRAINT | never_in_taxon NCBITaxon:554915 (Amoebozoa) |
2023-11-01 | Added | CONSTRAINT | never_in_taxon NCBITaxon:2 (Bacteria) |
2023-11-01 | Added | CONSTRAINT | never_in_taxon NCBITaxon:28009 (Choanoflagellata) |
2023-11-01 | Added | CONSTRAINT | never_in_taxon NCBITaxon:2157 (Archaea) |
2023-11-01 | Added | CONSTRAINT | never_in_taxon NCBITaxon:4751 (Fungi) |
2023-11-01 | Added | CONSTRAINT | never_in_taxon NCBITaxon:33208 (Metazoa) |
2019-09-12 | Deleted | RELATION | is a GO:0044435 (obsolete plastid part) |
2015-04-24 | Added | RELATION | part of GO:0009536 (plastid) |
2013-02-02 | Deleted | RELATION | part of GO:0009536 (plastid) |
Timestamp | Action | Category | Detail |
---|---|---|---|
2007-01-22 | Added | TERM | plastid-encoded plastid RNA polymerase complex |
Timestamp | Action | Category | Detail |
---|---|---|---|
2008-07-31 | Deleted | DEFINITION | Plastid-encoded plastid RNA polymerases are plastid-encoded DNA-directed RNA polymerases that resemble eubacterial multisubunit RNA polymerases with a core composed of alpha, beta, and beta-prime subunits. Some forms contain multiple additional subunits. An additional sigma factor subunit is required for promoter recognition. |
2008-07-31 | Added | DEFINITION | An RNA polymerase complex containing polypeptides encoded by the plastid genome. Plastid-encoded DNA-directed RNA polymerases resemble eubacterial multisubunit RNA polymerases, with a core composed of alpha, beta, and beta-prime subunits. Some forms contain multiple additional subunits. An additional sigma factor subunit is required for promoter recognition. |
2008-05-13 | Added | DEFINITION | Plastid-encoded plastid RNA polymerases are plastid-encoded DNA-directed RNA polymerases that resemble eubacterial multisubunit RNA polymerases with a core composed of alpha, beta, and beta-prime subunits. Some forms contain multiple additional subunits. An additional sigma factor subunit is required for promoter recognition. |
2008-05-12 | Deleted | DEFINITION | Plastid-encoded plastid RNA polymerases are plastid-encoded DNA-directed RNA polymerases that resemble eubacterial multisubunit RNA polymerases with a core composed of alpha, beta, and beta-prime subunits. Some forms contain multiple additional subunits. An additional sigma factor subunit is required for promoter recognition. |
2007-01-23 | Added | DEFINITION | Plastid-encoded plastid RNA polymerases are plastid-encoded DNA-directed RNA polymerases that resemble eubacterial multisubunit RNA polymerases with a core composed of alpha, beta, and beta-prime subunits. Some forms contain multiple additional subunits. An additional sigma factor subunit is required for promoter recognition. |
Timestamp | Action | Category | Detail |
---|---|---|---|
2019-09-12 | Deleted | RELATION | is a GO:0044435 (obsolete plastid part) |
2015-04-24 | Added | RELATION | part of GO:0009536 (plastid) |
2013-02-02 | Deleted | RELATION | part of GO:0009536 (plastid) |
2012-10-29 | Added | RELATION | part of GO:0009536 (plastid) |
2008-04-01 | Updated | RELATION | is a GO:0044435 (obsolete plastid part) |
2008-04-01 | Updated | RELATION | is a GO:0000428 (DNA-directed RNA polymerase complex) |
Timestamp | Action | Category | Detail |
---|
Timestamp | Action | Category | Detail |
---|---|---|---|
2024-03-05 | Added | CONSTRAINT | in_taxon NCBITaxon:131567 (cellular organisms) |
2023-11-01 | Added | CONSTRAINT | never_in_taxon NCBITaxon:554915 (Amoebozoa) |
2023-11-01 | Added | CONSTRAINT | never_in_taxon NCBITaxon:2 (Bacteria) |
2023-11-01 | Added | CONSTRAINT | never_in_taxon NCBITaxon:28009 (Choanoflagellata) |
2023-11-01 | Added | CONSTRAINT | never_in_taxon NCBITaxon:2157 (Archaea) |
2023-11-01 | Added | CONSTRAINT | never_in_taxon NCBITaxon:4751 (Fungi) |
2023-11-01 | Added | CONSTRAINT | never_in_taxon NCBITaxon:33208 (Metazoa) |
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