This term is obsolete.

GO:0000715 JSON

nucleotide-excision repair, DNA damage recognition

Biological Process

Definition (GO:0000715 GONUTS page)

The identification of lesions in DNA, such as pyrimidine-dimers, intrastrand cross-links, and bulky adducts. The wide range of substrate specificity suggests the repair complex recognizes distortions in the DNA helix. PMID:10197977

39,816 annotations

Synonyms

Synonyms are alternative words or phrases closely related in meaning to the term name, with indication of the relationship between the name and synonym given by the synonym scope.

Synonym Type
pyrimidine-dimer repair, DNA damage recognition related

Ancestor Chart

Ancestor chart for GO:0000715
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Ancestor chart

Child Terms

This table lists all terms that are direct descendants (child terms) of GO:0000715

Child Term Relationship to
GO:0000715
transcription-coupled nucleotide-excision repair, DNA damage recognition
is_a
nucleotide-excision repair, DNA damage recognition complex
capable_of_part_of

Annotation Guidance

Usage of this term is subject to the following annotation guidelines:

Guidance for interpreting DNA repair investigations Link

Annotation Blacklist

This list aims to correct incorrect annotations to UniProtKB accessions inferred from electronic annotation (IEA) methods that are supplied by the UniProt-GOA project to the GO Consortium:

Category Entity Type Entity ID Taxon ID Entity Name Ancestor GO ID Reason Rule/Method ID
NOT-qualified manual protein A6K9T7 10116 A6K9T7_RAT GO:0006281 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096
NOT-qualified manual protein A6K9T7 10116 A6K9T7_RAT GO:0006974 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096
NOT-qualified manual protein A8VU90 10090 ANKL1_MOUSE GO:0006974 1 NOT-qualified manual annotation exists with evidence code ECO:0000315 from this reference: PMID:27010503
NOT-qualified manual protein A8VU90 10090 ANKL1_MOUSE GO:0006281 1 NOT-qualified manual annotation exists with evidence code ECO:0000315 from this reference: PMID:27010503
NOT-qualified manual protein D4A332 10116 D4A332_RAT GO:0006281 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096
NOT-qualified manual protein D4A332 10116 D4A332_RAT GO:0006974 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096
NOT-qualified manual protein L0T864 83332 FPG2_MYCTU GO:0006281 1 NOT-qualified manual annotation exists with evidence code ECO:0000314 from this reference: PMID:20031487
NOT-qualified manual protein O89042 10116 DPOLA_RAT GO:0006281 2 NOT-qualified manual annotations exist with these evidence codes: ECO:0000250, ECO:0000266 from these references: GO_REF:0000024, GO_REF:0000096
NOT-qualified manual protein O89042 10116 DPOLA_RAT GO:0006289 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096
NOT-qualified manual protein O94468 284812 MAG2_SCHPO GO:0006289 1 NOT-qualified manual annotation exists with evidence code ECO:0000269 from this reference: PMID:23245849

Replaces

This term can be used instead of these obsolete terms:

GO Identifier GO Term Name Reason
GO:0006292 obsolete pyrimidine-dimer repair, DNA damage recognition consider GO:0000715

Co-occurring Terms

These tables show the number of times the term listed in the table has been co-annotated.

No co-occurrence statistics for GO:0000715 based on ALL annotations
The top 100 of 148 co-occurring terms
Co-occurring Term PR S% #Together #Compared
nucleotide-excision repair, DNA damage recognition
57,436.30 100.00 3,394 3,394
UV-damage excision repair
20,880.14 35.91 3,282 9,028
nucleotide-excision repair involved in interstrand cross-link repair
19,859.74 34.20 3,290 9,515
nucleotide-excision repair factor 1 complex
16,106.97 27.82 3,299 11,764
nucleotide-excision repair factor 4 complex
30,810.20 2.34 81 151
global genome nucleotide-excision repair
20,315.90 2.29 81 229
UV protection
5,175.95 2.15 93 1,032
nucleotide-excision repair
703.97 1.23 3,356 273,813
endonuclease complex
37,630.68 1.11 38 58
DNA amplification
21,190.09 1.10 38 103
Totals 34974 67834289
No co-occurrence statistics for GO:0000715 based on MANUAL annotations
The top 75 of 75 co-occurring terms
Co-occurring Term PR S% #Together #Compared
nucleotide-excision repair, DNA damage recognition
20,504.75 100.00 63 63
nucleotide-excision repair involved in interstrand cross-link repair
7,011.30 32.12 53 155
UV-damage excision repair
5,553.37 25.62 52 192
nucleotide-excision repair factor 1 complex
4,594.42 21.60 54 241
base-excision repair
979.11 4.73 52 1,089
UV protection
1,680.72 4.20 5 61
removal of nonhomologous ends
8,201.90 3.03 2 5
endonuclease complex
6,834.92 2.99 2 6
nucleotide-excision repair factor 4 complex
5,858.50 2.94 2 7
DNA amplification
4,556.61 2.86 2 9
Totals 526 706781

Change Log

Timestamp Action Category Detail
2011-04-10 Added SYNONYM pyrimidine-dimer repair, DNA damage recognition
2011-04-10 Deleted SYNONYM pyrimidine-dimer repair, DNA damage recognition
2008-05-13 Added DEFINITION The identification of lesions in DNA, such as pyrimidine-dimers, intrastrand cross-links, and bulky adducts. The wide range of substrate specificity suggests the repair complex recognizes distortions in the DNA helix.
2008-05-12 Deleted DEFINITION The identification of lesions in DNA, such as pyrimidine-dimers, intrastrand cross-links, and bulky adducts. The wide range of substrate specificity suggests the repair complex recognizes distortions in the DNA helix.
2008-04-01 Updated RELATION part of GO:0006289 (nucleotide-excision repair)
2008-04-01 Updated RELATION is a GO:0051276 (chromosome organization)
2007-08-09 Deleted SYNONYM pyrimidine-dimer repair, DNA damage recognition
2007-08-09 Added SYNONYM pyrimidine-dimer repair, DNA damage recognition
2005-08-10 Added SYNONYM pyrimidine-dimer repair, DNA damage recognition
2002-11-27 Added DEFINITION The identification of lesions in DNA, such as pyrimidine-dimers, intrastrand cross-links, and bulky adducts. The wide range of substrate specificity suggests the repair complex recognizes distortions in the DNA helix.
Timestamp Action Category Detail
2002-07-26 Added TERM nucleotide-excision repair, DNA damage recognition
Timestamp Action Category Detail
2011-04-10 Added SYNONYM pyrimidine-dimer repair, DNA damage recognition
2011-04-10 Deleted SYNONYM pyrimidine-dimer repair, DNA damage recognition
2008-05-13 Added DEFINITION The identification of lesions in DNA, such as pyrimidine-dimers, intrastrand cross-links, and bulky adducts. The wide range of substrate specificity suggests the repair complex recognizes distortions in the DNA helix.
2008-05-12 Deleted DEFINITION The identification of lesions in DNA, such as pyrimidine-dimers, intrastrand cross-links, and bulky adducts. The wide range of substrate specificity suggests the repair complex recognizes distortions in the DNA helix.
2007-08-09 Deleted SYNONYM pyrimidine-dimer repair, DNA damage recognition
2007-08-09 Added SYNONYM pyrimidine-dimer repair, DNA damage recognition
2005-08-10 Added SYNONYM pyrimidine-dimer repair, DNA damage recognition
2002-11-27 Added DEFINITION The identification of lesions in DNA, such as pyrimidine-dimers, intrastrand cross-links, and bulky adducts. The wide range of substrate specificity suggests the repair complex recognizes distortions in the DNA helix.
Timestamp Action Category Detail
2008-04-01 Updated RELATION part of GO:0006289 (nucleotide-excision repair)
2008-04-01 Updated RELATION is a GO:0051276 (chromosome organization)
Timestamp Action Category Detail
Timestamp Action Category Detail
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