GO:0000715
JSON
nucleotide-excision repair, DNA damage recognition
Biological Process
Definition (GO:0000715 GONUTS page)
The identification of lesions in DNA, such as pyrimidine-dimers, intrastrand cross-links, and bulky adducts. The wide range of substrate specificity suggests the repair complex recognizes distortions in the DNA helix. PMID:10197977
Synonyms
Synonyms are alternative words or phrases closely related in meaning to the term name, with indication of the relationship between the name and synonym given by the synonym scope.
Synonym | Type |
---|---|
pyrimidine-dimer repair, DNA damage recognition | related |
Ancestor Chart
Child Terms
This table lists all terms that are direct descendants (child terms) of GO:0000715
Child Term | Relationship to GO:0000715 |
---|---|
transcription-coupled nucleotide-excision repair, DNA damage recognition
|
is_a |
nucleotide-excision repair, DNA damage recognition complex
|
capable_of_part_of |
Annotation Guidance
Usage of this term is subject to the following annotation guidelines:
Guidance for interpreting DNA repair investigations | Link |
Annotation Blacklist
This list aims to correct incorrect annotations to UniProtKB accessions inferred from electronic annotation (IEA) methods that are supplied by the UniProt-GOA project to the GO Consortium:
Category | Entity Type | Entity ID | Taxon ID | Entity Name | Ancestor GO ID | Reason | Rule/Method ID |
---|---|---|---|---|---|---|---|
NOT-qualified manual | protein | A6K9T7 | 10116 | A6K9T7_RAT | GO:0006281 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | A6K9T7 | 10116 | A6K9T7_RAT | GO:0006974 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | A8VU90 | 10090 | ANKL1_MOUSE | GO:0006974 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000315 from this reference: PMID:27010503 | |
NOT-qualified manual | protein | A8VU90 | 10090 | ANKL1_MOUSE | GO:0006281 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000315 from this reference: PMID:27010503 | |
NOT-qualified manual | protein | D4A332 | 10116 | D4A332_RAT | GO:0006281 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | D4A332 | 10116 | D4A332_RAT | GO:0006974 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | L0T864 | 83332 | FPG2_MYCTU | GO:0006281 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000314 from this reference: PMID:20031487 | |
NOT-qualified manual | protein | O89042 | 10116 | DPOLA_RAT | GO:0006281 | 2 NOT-qualified manual annotations exist with these evidence codes: ECO:0000250, ECO:0000266 from these references: GO_REF:0000024, GO_REF:0000096 | |
NOT-qualified manual | protein | O89042 | 10116 | DPOLA_RAT | GO:0006289 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | O94468 | 284812 | MAG2_SCHPO | GO:0006289 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000269 from this reference: PMID:23245849 |
Replaces
This term can be used instead of these obsolete terms:
GO Identifier | GO Term Name | Reason |
---|---|---|
GO:0006292 | obsolete pyrimidine-dimer repair, DNA damage recognition | consider GO:0000715 |
Co-occurring Terms
These tables show the number of times the term listed in the table has been co-annotated.
No co-occurrence statistics for GO:0000715 based on ALL annotations
The top 100 of 148 co-occurring terms
Co-occurring Term | PR | S% | #Together | #Compared |
---|---|---|---|---|
nucleotide-excision repair, DNA damage recognition
|
57,436.30 | 100.00 | 3,394 | 3,394 |
UV-damage excision repair
|
20,880.14 | 35.91 | 3,282 | 9,028 |
nucleotide-excision repair involved in interstrand cross-link repair
|
19,859.74 | 34.20 | 3,290 | 9,515 |
nucleotide-excision repair factor 1 complex
|
16,106.97 | 27.82 | 3,299 | 11,764 |
nucleotide-excision repair factor 4 complex
|
30,810.20 | 2.34 | 81 | 151 |
global genome nucleotide-excision repair
|
20,315.90 | 2.29 | 81 | 229 |
UV protection
|
5,175.95 | 2.15 | 93 | 1,032 |
nucleotide-excision repair
|
703.97 | 1.23 | 3,356 | 273,813 |
endonuclease complex
|
37,630.68 | 1.11 | 38 | 58 |
DNA amplification
|
21,190.09 | 1.10 | 38 | 103 |
Totals | 34974 | 67834289 |
No co-occurrence statistics for GO:0000715 based on MANUAL annotations
The top 75 of 75 co-occurring terms
Co-occurring Term | PR | S% | #Together | #Compared |
---|---|---|---|---|
nucleotide-excision repair, DNA damage recognition
|
20,504.75 | 100.00 | 63 | 63 |
nucleotide-excision repair involved in interstrand cross-link repair
|
7,011.30 | 32.12 | 53 | 155 |
UV-damage excision repair
|
5,553.37 | 25.62 | 52 | 192 |
nucleotide-excision repair factor 1 complex
|
4,594.42 | 21.60 | 54 | 241 |
base-excision repair
|
979.11 | 4.73 | 52 | 1,089 |
UV protection
|
1,680.72 | 4.20 | 5 | 61 |
removal of nonhomologous ends
|
8,201.90 | 3.03 | 2 | 5 |
endonuclease complex
|
6,834.92 | 2.99 | 2 | 6 |
nucleotide-excision repair factor 4 complex
|
5,858.50 | 2.94 | 2 | 7 |
DNA amplification
|
4,556.61 | 2.86 | 2 | 9 |
Totals | 526 | 706781 |
Change Log
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Timestamp | Action | Category | Detail |
---|---|---|---|
2011-04-10 | Added | SYNONYM | pyrimidine-dimer repair, DNA damage recognition |
2011-04-10 | Deleted | SYNONYM | pyrimidine-dimer repair, DNA damage recognition |
2008-05-13 | Added | DEFINITION | The identification of lesions in DNA, such as pyrimidine-dimers, intrastrand cross-links, and bulky adducts. The wide range of substrate specificity suggests the repair complex recognizes distortions in the DNA helix. |
2008-05-12 | Deleted | DEFINITION | The identification of lesions in DNA, such as pyrimidine-dimers, intrastrand cross-links, and bulky adducts. The wide range of substrate specificity suggests the repair complex recognizes distortions in the DNA helix. |
2008-04-01 | Updated | RELATION | part of GO:0006289 (nucleotide-excision repair) |
2008-04-01 | Updated | RELATION | is a GO:0051276 (chromosome organization) |
2007-08-09 | Deleted | SYNONYM | pyrimidine-dimer repair, DNA damage recognition |
2007-08-09 | Added | SYNONYM | pyrimidine-dimer repair, DNA damage recognition |
2005-08-10 | Added | SYNONYM | pyrimidine-dimer repair, DNA damage recognition |
2002-11-27 | Added | DEFINITION | The identification of lesions in DNA, such as pyrimidine-dimers, intrastrand cross-links, and bulky adducts. The wide range of substrate specificity suggests the repair complex recognizes distortions in the DNA helix. |
Timestamp | Action | Category | Detail |
---|---|---|---|
2002-07-26 | Added | TERM | nucleotide-excision repair, DNA damage recognition |
Timestamp | Action | Category | Detail |
---|---|---|---|
2011-04-10 | Added | SYNONYM | pyrimidine-dimer repair, DNA damage recognition |
2011-04-10 | Deleted | SYNONYM | pyrimidine-dimer repair, DNA damage recognition |
2008-05-13 | Added | DEFINITION | The identification of lesions in DNA, such as pyrimidine-dimers, intrastrand cross-links, and bulky adducts. The wide range of substrate specificity suggests the repair complex recognizes distortions in the DNA helix. |
2008-05-12 | Deleted | DEFINITION | The identification of lesions in DNA, such as pyrimidine-dimers, intrastrand cross-links, and bulky adducts. The wide range of substrate specificity suggests the repair complex recognizes distortions in the DNA helix. |
2007-08-09 | Deleted | SYNONYM | pyrimidine-dimer repair, DNA damage recognition |
2007-08-09 | Added | SYNONYM | pyrimidine-dimer repair, DNA damage recognition |
2005-08-10 | Added | SYNONYM | pyrimidine-dimer repair, DNA damage recognition |
2002-11-27 | Added | DEFINITION | The identification of lesions in DNA, such as pyrimidine-dimers, intrastrand cross-links, and bulky adducts. The wide range of substrate specificity suggests the repair complex recognizes distortions in the DNA helix. |
Timestamp | Action | Category | Detail |
---|---|---|---|
2008-04-01 | Updated | RELATION | part of GO:0006289 (nucleotide-excision repair) |
2008-04-01 | Updated | RELATION | is a GO:0051276 (chromosome organization) |
Timestamp | Action | Category | Detail |
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Timestamp | Action | Category | Detail |
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