Note that this term can be used in place of the obsolete cellular component term 'centromere ; GO:0005698'. Use with caution because this term refers to a specific region of the chromosome and not a protein complex.
GO:0000779
JSON
condensed chromosome, centromeric region
Cellular Component
Definition (GO:0000779 GONUTS page)
The region of a condensed chromosome that includes the centromere and associated proteins, including the kinetochore. In monocentric chromosomes, this region corresponds to a single area of the chromosome, whereas in holocentric chromosomes, it is evenly distributed along the chromosome.
Comments
Note that this term can be used in place of the obsolete cellular component term 'centromere ; GO:0005698'. Use with caution because this term refers to a specific region of the chromosome and not a protein complex.
Secondary IDs
GO:0000780
Synonyms
Synonyms are alternative words or phrases closely related in meaning to the term name, with indication of the relationship between the name and synonym given by the synonym scope.
Synonym | Type |
---|---|
condensed chromosome, centric region | exact |
condensed nuclear chromosome, centromeric region | narrow |
condensed chromosome, pericentric region | related |
condensed chromosome, centromere | related |
Ancestor Chart
Child Terms
This table lists all terms that are direct descendants (child terms) of GO:0000779
Child Term | Relationship to GO:0000779 |
---|---|
kinetochore
|
part_of |
Taxon Constraints
The use of this term should conform to the following taxon constraints:
Ancestor GO ID | Ancestor GO Term Name | Relationship | Taxon ID | Taxon | Reference(s) |
---|---|---|---|---|---|
GO:0000779 | condensed chromosome, centromeric region | Only in Taxon | 131567 | cellular organisms |
More information on taxon constraints in GO is available here
Annotation Blacklist
This list aims to correct incorrect annotations to UniProtKB accessions inferred from electronic annotation (IEA) methods that are supplied by the UniProt-GOA project to the GO Consortium:
Category | Entity Type | Entity ID | Taxon ID | Entity Name | Ancestor GO ID | Reason | Rule/Method ID |
---|---|---|---|---|---|---|---|
NOT-qualified manual | protein | A0A8I5Y5Z6 | 10116 | A0A8I5Y5Z6_RAT | GO:0000793 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | A0A8I5Y7L4 | 10116 | A0A8I5Y7L4_RAT | GO:0005694 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | A0A8I6A2T0 | 10116 | A0A8I6A2T0_RAT | GO:0000793 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | A6I4N6 | 10116 | A6I4N6_RAT | GO:0000793 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | A6ILF7 | 10116 | A6ILF7_RAT | GO:0000793 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | A8QWW8 | 10116 | A8QWW8_RAT | GO:0000793 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | D3ZS29 | 10116 | D3ZS29_RAT | GO:0000793 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | F7EEB9 | 10116 | F7EEB9_RAT | GO:0000793 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | Q13426 | 9606 | XRCC4_HUMAN | GO:0000793 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000314 from this reference: PMID:12589063 | |
NOT-qualified manual | protein | Q14TE9 | 10116 | Q14TE9_RAT | GO:0005694 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 |
Co-occurring Terms
These tables show the number of times the term listed in the table has been co-annotated.
No co-occurrence statistics for GO:0000779 based on ALL annotations
The top 100 of 765 co-occurring terms
Co-occurring Term | PR | S% | #Together | #Compared |
---|---|---|---|---|
condensed chromosome, centromeric region
|
13,382.22 | 100.00 | 14,567 | 14,567 |
meiotic chromosome condensation
|
9,803.69 | 42.68 | 7,364 | 10,052 |
centromeric DNA binding
|
11,987.25 | 23.69 | 3,549 | 3,962 |
spindle attachment to meiosis I kinetochore
|
12,420.00 | 21.69 | 3,214 | 3,463 |
mitotic chromosome condensation
|
3,386.58 | 20.47 | 7,532 | 29,763 |
condensin complex
|
3,142.93 | 19.25 | 7,523 | 32,032 |
kinetochore assembly
|
2,837.06 | 13.11 | 3,727 | 17,580 |
attachment of mitotic spindle microtubules to kinetochore
|
2,372.06 | 11.04 | 3,298 | 18,606 |
meiotic chromosome segregation
|
2,967.94 | 6.75 | 1,289 | 5,812 |
lateral element
|
4,039.84 | 6.06 | 1,027 | 3,402 |
Totals | 103032 | 3746294 |
No co-occurrence statistics for GO:0000779 based on MANUAL annotations
The top 100 of 529 co-occurring terms
Co-occurring Term | PR | S% | #Together | #Compared |
---|---|---|---|---|
condensed chromosome, centromeric region
|
3,867.66 | 100.00 | 334 | 334 |
meiotic chromosome condensation
|
2,338.29 | 40.66 | 185 | 306 |
condensin complex
|
1,043.83 | 22.41 | 190 | 704 |
mitotic chromosome condensation
|
965.63 | 20.91 | 188 | 753 |
chromosome, centromeric region
|
355.13 | 6.26 | 55 | 599 |
lateral element
|
889.90 | 6.18 | 26 | 113 |
synaptonemal complex assembly
|
489.79 | 5.43 | 29 | 229 |
pericentric heterochromatin
|
290.07 | 4.63 | 36 | 480 |
kinetochore assembly
|
383.81 | 4.56 | 26 | 262 |
spindle attachment to meiosis I kinetochore
|
650.31 | 4.44 | 19 | 113 |
Totals | 1995 | 28579 |
Change Log
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Timestamp | Action | Category | Detail |
---|---|---|---|
2024-09-05 | Added | CONSTRAINT | in_taxon NCBITaxon:131567 (cellular organisms) |
2020-10-23 | Added | SECONDARY | GO:0000780 (condensed nuclear chromosome, centromeric region) |
2020-10-23 | Added | SYNONYM | condensed nuclear chromosome, centromeric region |
2008-06-14 | Deleted | DEFINITION | The central region of a condensed chromosome that includes the centromere and associated proteins, including the kinetochore. In monocentric chromosomes, this region corresponds to a single area of the chromosome, whereas in holocentric chromosomes, it is evenly distributed along the chromosome. |
2008-06-14 | Added | DEFINITION | The region of a condensed chromosome that includes the centromere and associated proteins, including the kinetochore. In monocentric chromosomes, this region corresponds to a single area of the chromosome, whereas in holocentric chromosomes, it is evenly distributed along the chromosome. |
2008-06-14 | Added | SYNONYM | condensed chromosome, pericentric region |
2008-06-14 | Updated | TERM | condensed chromosome, centromeric region |
2008-06-14 | Added | SYNONYM | condensed chromosome, centric region |
2008-05-13 | Added | DEFINITION | The central region of a condensed chromosome that includes the centromere and associated proteins, including the kinetochore. In monocentric chromosomes, this region corresponds to a single area of the chromosome, whereas in holocentric chromosomes, it is evenly distributed along the chromosome. |
2008-05-12 | Deleted | DEFINITION | The central region of a condensed chromosome that includes the centromere and associated proteins, including the kinetochore. In monocentric chromosomes, this region corresponds to a single area of the chromosome, whereas in holocentric chromosomes, it is evenly distributed along the chromosome. |
Timestamp | Action | Category | Detail |
---|---|---|---|
2008-06-14 | Updated | TERM | condensed chromosome, centromeric region |
2003-04-03 | Added | TERM | condensed chromosome, pericentric region |
Timestamp | Action | Category | Detail |
---|---|---|---|
2020-10-23 | Added | SYNONYM | condensed nuclear chromosome, centromeric region |
2008-06-14 | Deleted | DEFINITION | The central region of a condensed chromosome that includes the centromere and associated proteins, including the kinetochore. In monocentric chromosomes, this region corresponds to a single area of the chromosome, whereas in holocentric chromosomes, it is evenly distributed along the chromosome. |
2008-06-14 | Added | DEFINITION | The region of a condensed chromosome that includes the centromere and associated proteins, including the kinetochore. In monocentric chromosomes, this region corresponds to a single area of the chromosome, whereas in holocentric chromosomes, it is evenly distributed along the chromosome. |
2008-06-14 | Added | SYNONYM | condensed chromosome, pericentric region |
2008-06-14 | Added | SYNONYM | condensed chromosome, centric region |
2008-05-13 | Added | DEFINITION | The central region of a condensed chromosome that includes the centromere and associated proteins, including the kinetochore. In monocentric chromosomes, this region corresponds to a single area of the chromosome, whereas in holocentric chromosomes, it is evenly distributed along the chromosome. |
2008-05-12 | Deleted | DEFINITION | The central region of a condensed chromosome that includes the centromere and associated proteins, including the kinetochore. In monocentric chromosomes, this region corresponds to a single area of the chromosome, whereas in holocentric chromosomes, it is evenly distributed along the chromosome. |
2008-01-27 | Updated | DEFINITION | The central region of a condensed chromosome that includes the centromere and associated proteins, including the kinetochore. In monocentric chromosomes, this region corresponds to a single area of the chromosome, whereas in holocentric chromosomes, it is evenly distributed along the chromosome. |
2007-08-09 | Deleted | SYNONYM | condensed chromosome, centromere |
2007-08-09 | Added | SYNONYM | condensed chromosome, centromere |
2003-04-03 | Added | SYNONYM | condensed chromosome, centromere |
2003-04-03 | Added | DEFINITION | The central region of a condensed chromosome that includes the centromere and associated proteins, including the kinetochore. |
Timestamp | Action | Category | Detail |
---|---|---|---|
2008-04-01 | Updated | RELATION | part of GO:0000793 (condensed chromosome) |
2008-04-01 | Updated | RELATION | is a GO:0000775 (chromosome, centromeric region) |
Timestamp | Action | Category | Detail |
---|
Timestamp | Action | Category | Detail |
---|---|---|---|
2024-09-05 | Added | CONSTRAINT | in_taxon NCBITaxon:131567 (cellular organisms) |
2020-10-23 | Added | SECONDARY | GO:0000780 (condensed nuclear chromosome, centromeric region) |
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