This term is obsolete.

GO:0000972 JSON

transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery

Biological Process

Definition (GO:0000972 GONUTS page)

The chromosome organization process in which the DNA sequence containing a gene transcribed by RNA polymerase II is maintained in a specific location at the nuclear periphery. In S. cerevisiae, this process involves cis-acting DNA sequences such as the TATA box and upstream activating sequence (UAS) elements, trans-acting transcriptional activators, and also the 3'-UTR of the transcript. PMID:18614049

25,350 annotations

Ancestor Chart

Ancestor chart for GO:0000972
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Child Terms

This table lists all terms that are direct descendants (child terms) of GO:0000972

Child Term Relationship to
GO:0000972
post-transcriptional tethering of RNA polymerase II gene DNA at nuclear periphery
is_a

Co-occurring Terms

These tables show the number of times the term listed in the table has been co-annotated.

No co-occurrence statistics for GO:0000972 based on ALL annotations
The top 100 of 343 co-occurring terms
Co-occurring Term PR S% #Together #Compared
transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery
20,331.92 100.00 9,746 9,746
protein localization to nuclear inner membrane
10,681.58 35.22 5,034 9,582
nuclear pore inner ring
7,661.10 27.81 5,019 13,320
RNA export from nucleus
3,307.98 14.21 5,160 31,715
nuclear pore outer ring
3,212.54 13.24 4,378 27,708
structural constituent of nuclear pore
2,360.71 11.56 9,417 81,105
poly(A)+ mRNA export from nucleus
2,411.85 10.39 4,444 37,463
nuclear pore
1,376.50 6.74 9,191 135,758
nucleocytoplasmic transport
1,339.57 6.21 5,030 76,345
protein import into nucleus
1,138.40 5.59 9,400 167,885
Totals 93329 14762891
No co-occurrence statistics for GO:0000972 based on MANUAL annotations
The top 100 of 182 co-occurring terms
Co-occurring Term PR S% #Together #Compared
transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery
3,794.44 100.00 372 372
RNA export from nucleus
1,095.04 25.60 258 894
protein localization to nuclear inner membrane
1,889.28 24.19 119 239
nuclear pore inner ring
1,728.74 23.00 118 259
structural constituent of nuclear pore
510.97 12.35 223 1,656
nuclear pore outer ring
501.91 9.73 100 756
nuclear pore
335.88 7.97 165 1,864
poly(A)+ mRNA export from nucleus
332.63 7.22 108 1,232
protein import into nucleus
216.32 5.48 220 3,859
ubiquitin binding
132.19 3.29 139 3,990
Totals 2315 79776

Change Log

Timestamp Action Category Detail
2010-11-14 Added DEFINITION The chromosome organization process in which the DNA sequence containing a gene transcribed by RNA polymerase II is maintained in a specific location at the nuclear periphery. In S. cerevisiae, this process involves cis-acting DNA sequences such as the TATA box and upstream activating sequence (UAS) elements, trans-acting transcriptional activators, and also the 3'-UTR of the transcript.
2010-11-14 Deleted DEFINITION The process by which the DNA sequence containing a gene transcribed by RNA polymerase II is maintained in a specific location at the nuclear periphery. In S. cerevisiae, this process involves cis-acting DNA sequences such as the TATA box and upstream activating sequence (UAS) elements, trans-acting transcriptional activators, and also the 3'-UTR of the transcript.
2009-09-12 Added TERM transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery
2009-09-12 Added RELATION is a GO:0051276 (chromosome organization)
2009-09-12 Added DEFINITION The process by which the DNA sequence containing a gene transcribed by RNA polymerase II is maintained in a specific location at the nuclear periphery. In S. cerevisiae, this process involves cis-acting DNA sequences such as the TATA box and upstream activating sequence (UAS) elements, trans-acting transcriptional activators, and also the 3'-UTR of the transcript.
Timestamp Action Category Detail
2009-09-12 Added TERM transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery
Timestamp Action Category Detail
2010-11-14 Added DEFINITION The chromosome organization process in which the DNA sequence containing a gene transcribed by RNA polymerase II is maintained in a specific location at the nuclear periphery. In S. cerevisiae, this process involves cis-acting DNA sequences such as the TATA box and upstream activating sequence (UAS) elements, trans-acting transcriptional activators, and also the 3'-UTR of the transcript.
2010-11-14 Deleted DEFINITION The process by which the DNA sequence containing a gene transcribed by RNA polymerase II is maintained in a specific location at the nuclear periphery. In S. cerevisiae, this process involves cis-acting DNA sequences such as the TATA box and upstream activating sequence (UAS) elements, trans-acting transcriptional activators, and also the 3'-UTR of the transcript.
2009-09-12 Added DEFINITION The process by which the DNA sequence containing a gene transcribed by RNA polymerase II is maintained in a specific location at the nuclear periphery. In S. cerevisiae, this process involves cis-acting DNA sequences such as the TATA box and upstream activating sequence (UAS) elements, trans-acting transcriptional activators, and also the 3'-UTR of the transcript.
Timestamp Action Category Detail
2009-09-12 Added RELATION is a GO:0051276 (chromosome organization)
Timestamp Action Category Detail
Timestamp Action Category Detail
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