GO:0000972
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transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery
Biological Process
Definition (GO:0000972 GONUTS page)
The chromosome organization process in which the DNA sequence containing a gene transcribed by RNA polymerase II is maintained in a specific location at the nuclear periphery. In S. cerevisiae, this process involves cis-acting DNA sequences such as the TATA box and upstream activating sequence (UAS) elements, trans-acting transcriptional activators, and also the 3'-UTR of the transcript. PMID:18614049
Ancestor Chart
Child Terms
This table lists all terms that are direct descendants (child terms) of GO:0000972
Child Term | Relationship to GO:0000972 |
---|---|
post-transcriptional tethering of RNA polymerase II gene DNA at nuclear periphery
|
is_a |
Co-occurring Terms
These tables show the number of times the term listed in the table has been co-annotated.
No co-occurrence statistics for GO:0000972 based on ALL annotations
The top 100 of 343 co-occurring terms
Co-occurring Term | PR | S% | #Together | #Compared |
---|---|---|---|---|
transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery
|
20,331.92 | 100.00 | 9,746 | 9,746 |
protein localization to nuclear inner membrane
|
10,681.58 | 35.22 | 5,034 | 9,582 |
nuclear pore inner ring
|
7,661.10 | 27.81 | 5,019 | 13,320 |
RNA export from nucleus
|
3,307.98 | 14.21 | 5,160 | 31,715 |
nuclear pore outer ring
|
3,212.54 | 13.24 | 4,378 | 27,708 |
structural constituent of nuclear pore
|
2,360.71 | 11.56 | 9,417 | 81,105 |
poly(A)+ mRNA export from nucleus
|
2,411.85 | 10.39 | 4,444 | 37,463 |
nuclear pore
|
1,376.50 | 6.74 | 9,191 | 135,758 |
nucleocytoplasmic transport
|
1,339.57 | 6.21 | 5,030 | 76,345 |
protein import into nucleus
|
1,138.40 | 5.59 | 9,400 | 167,885 |
Totals | 93329 | 14762891 |
No co-occurrence statistics for GO:0000972 based on MANUAL annotations
The top 100 of 182 co-occurring terms
Co-occurring Term | PR | S% | #Together | #Compared |
---|---|---|---|---|
transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery
|
3,794.44 | 100.00 | 372 | 372 |
RNA export from nucleus
|
1,095.04 | 25.60 | 258 | 894 |
protein localization to nuclear inner membrane
|
1,889.28 | 24.19 | 119 | 239 |
nuclear pore inner ring
|
1,728.74 | 23.00 | 118 | 259 |
structural constituent of nuclear pore
|
510.97 | 12.35 | 223 | 1,656 |
nuclear pore outer ring
|
501.91 | 9.73 | 100 | 756 |
nuclear pore
|
335.88 | 7.97 | 165 | 1,864 |
poly(A)+ mRNA export from nucleus
|
332.63 | 7.22 | 108 | 1,232 |
protein import into nucleus
|
216.32 | 5.48 | 220 | 3,859 |
ubiquitin binding
|
132.19 | 3.29 | 139 | 3,990 |
Totals | 2315 | 79776 |
Change Log
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Timestamp | Action | Category | Detail |
---|---|---|---|
2010-11-14 | Added | DEFINITION | The chromosome organization process in which the DNA sequence containing a gene transcribed by RNA polymerase II is maintained in a specific location at the nuclear periphery. In S. cerevisiae, this process involves cis-acting DNA sequences such as the TATA box and upstream activating sequence (UAS) elements, trans-acting transcriptional activators, and also the 3'-UTR of the transcript. |
2010-11-14 | Deleted | DEFINITION | The process by which the DNA sequence containing a gene transcribed by RNA polymerase II is maintained in a specific location at the nuclear periphery. In S. cerevisiae, this process involves cis-acting DNA sequences such as the TATA box and upstream activating sequence (UAS) elements, trans-acting transcriptional activators, and also the 3'-UTR of the transcript. |
2009-09-12 | Added | TERM | transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery |
2009-09-12 | Added | RELATION | is a GO:0051276 (chromosome organization) |
2009-09-12 | Added | DEFINITION | The process by which the DNA sequence containing a gene transcribed by RNA polymerase II is maintained in a specific location at the nuclear periphery. In S. cerevisiae, this process involves cis-acting DNA sequences such as the TATA box and upstream activating sequence (UAS) elements, trans-acting transcriptional activators, and also the 3'-UTR of the transcript. |
Timestamp | Action | Category | Detail |
---|---|---|---|
2009-09-12 | Added | TERM | transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery |
Timestamp | Action | Category | Detail |
---|---|---|---|
2010-11-14 | Added | DEFINITION | The chromosome organization process in which the DNA sequence containing a gene transcribed by RNA polymerase II is maintained in a specific location at the nuclear periphery. In S. cerevisiae, this process involves cis-acting DNA sequences such as the TATA box and upstream activating sequence (UAS) elements, trans-acting transcriptional activators, and also the 3'-UTR of the transcript. |
2010-11-14 | Deleted | DEFINITION | The process by which the DNA sequence containing a gene transcribed by RNA polymerase II is maintained in a specific location at the nuclear periphery. In S. cerevisiae, this process involves cis-acting DNA sequences such as the TATA box and upstream activating sequence (UAS) elements, trans-acting transcriptional activators, and also the 3'-UTR of the transcript. |
2009-09-12 | Added | DEFINITION | The process by which the DNA sequence containing a gene transcribed by RNA polymerase II is maintained in a specific location at the nuclear periphery. In S. cerevisiae, this process involves cis-acting DNA sequences such as the TATA box and upstream activating sequence (UAS) elements, trans-acting transcriptional activators, and also the 3'-UTR of the transcript. |
Timestamp | Action | Category | Detail |
---|---|---|---|
2009-09-12 | Added | RELATION | is a GO:0051276 (chromosome organization) |
Timestamp | Action | Category | Detail |
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Timestamp | Action | Category | Detail |
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