GO:0000972
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transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery
Biological Process
Definition (GO:0000972 GONUTS page)
The chromosome organization process in which the DNA sequence containing a gene transcribed by RNA polymerase II is maintained in a specific location at the nuclear periphery. In S. cerevisiae, this process involves cis-acting DNA sequences such as the TATA box and upstream activating sequence (UAS) elements, trans-acting transcriptional activators, and also the 3'-UTR of the transcript. PMID:18614049
Ancestor Chart
Child Terms
This table lists all terms that are direct descendants (child terms) of GO:0000972
Child Term | Relationship to GO:0000972 |
---|---|
post-transcriptional tethering of RNA polymerase II gene DNA at nuclear periphery
|
is_a |
Co-occurring Terms
These tables show the number of times the term listed in the table has been co-annotated.
No co-occurrence statistics for GO:0000972 based on ALL annotations
The top 100 of 353 co-occurring terms
Co-occurring Term | PR | S% | #Together | #Compared |
---|---|---|---|---|
transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery
|
20,689.75 | 100.00 | 9,422 | 9,422 |
protein localization to nuclear inner membrane
|
10,881.07 | 35.16 | 4,850 | 9,222 |
nuclear pore inner ring
|
7,758.86 | 27.66 | 4,835 | 12,893 |
RNA export from nucleus
|
3,360.53 | 14.18 | 4,965 | 30,568 |
nuclear pore outer ring
|
3,293.28 | 13.33 | 4,249 | 26,694 |
structural constituent of nuclear pore
|
2,394.48 | 11.53 | 9,104 | 78,664 |
poly(A)+ mRNA export from nucleus
|
2,463.54 | 10.44 | 4,315 | 36,239 |
nuclear pore
|
1,389.45 | 6.69 | 8,879 | 132,214 |
nucleocytoplasmic transport
|
1,350.99 | 6.15 | 4,846 | 74,214 |
protein import into nucleus
|
1,161.29 | 5.60 | 9,087 | 161,896 |
Totals | 90309 | 14659666 |
No co-occurrence statistics for GO:0000972 based on MANUAL annotations
The top 100 of 186 co-occurring terms
Co-occurring Term | PR | S% | #Together | #Compared |
---|---|---|---|---|
transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery
|
3,777.19 | 100.00 | 342 | 342 |
RNA export from nucleus
|
1,109.29 | 25.99 | 237 | 807 |
protein localization to nuclear inner membrane
|
1,854.57 | 23.96 | 109 | 222 |
nuclear pore inner ring
|
1,714.02 | 22.88 | 108 | 238 |
structural constituent of nuclear pore
|
505.61 | 12.27 | 204 | 1,524 |
nuclear pore outer ring
|
491.03 | 9.57 | 91 | 700 |
nuclear pore
|
311.73 | 7.50 | 154 | 1,866 |
poly(A)+ mRNA export from nucleus
|
322.36 | 7.06 | 99 | 1,160 |
protein import into nucleus
|
213.38 | 5.43 | 201 | 3,558 |
ubiquitin binding
|
130.74 | 3.27 | 128 | 3,698 |
Totals | 2162 | 77532 |
Change Log
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Timestamp | Action | Category | Detail |
---|---|---|---|
2010-11-14 | Added | DEFINITION | The chromosome organization process in which the DNA sequence containing a gene transcribed by RNA polymerase II is maintained in a specific location at the nuclear periphery. In S. cerevisiae, this process involves cis-acting DNA sequences such as the TATA box and upstream activating sequence (UAS) elements, trans-acting transcriptional activators, and also the 3'-UTR of the transcript. |
2010-11-14 | Deleted | DEFINITION | The process by which the DNA sequence containing a gene transcribed by RNA polymerase II is maintained in a specific location at the nuclear periphery. In S. cerevisiae, this process involves cis-acting DNA sequences such as the TATA box and upstream activating sequence (UAS) elements, trans-acting transcriptional activators, and also the 3'-UTR of the transcript. |
2009-09-12 | Added | RELATION | is a GO:0051276 (chromosome organization) |
2009-09-12 | Added | DEFINITION | The process by which the DNA sequence containing a gene transcribed by RNA polymerase II is maintained in a specific location at the nuclear periphery. In S. cerevisiae, this process involves cis-acting DNA sequences such as the TATA box and upstream activating sequence (UAS) elements, trans-acting transcriptional activators, and also the 3'-UTR of the transcript. |
2009-09-12 | Added | TERM | transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery |
Timestamp | Action | Category | Detail |
---|---|---|---|
2009-09-12 | Added | TERM | transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery |
Timestamp | Action | Category | Detail |
---|---|---|---|
2010-11-14 | Added | DEFINITION | The chromosome organization process in which the DNA sequence containing a gene transcribed by RNA polymerase II is maintained in a specific location at the nuclear periphery. In S. cerevisiae, this process involves cis-acting DNA sequences such as the TATA box and upstream activating sequence (UAS) elements, trans-acting transcriptional activators, and also the 3'-UTR of the transcript. |
2010-11-14 | Deleted | DEFINITION | The process by which the DNA sequence containing a gene transcribed by RNA polymerase II is maintained in a specific location at the nuclear periphery. In S. cerevisiae, this process involves cis-acting DNA sequences such as the TATA box and upstream activating sequence (UAS) elements, trans-acting transcriptional activators, and also the 3'-UTR of the transcript. |
2009-09-12 | Added | DEFINITION | The process by which the DNA sequence containing a gene transcribed by RNA polymerase II is maintained in a specific location at the nuclear periphery. In S. cerevisiae, this process involves cis-acting DNA sequences such as the TATA box and upstream activating sequence (UAS) elements, trans-acting transcriptional activators, and also the 3'-UTR of the transcript. |
Timestamp | Action | Category | Detail |
---|---|---|---|
2009-09-12 | Added | RELATION | is a GO:0051276 (chromosome organization) |
Timestamp | Action | Category | Detail |
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Timestamp | Action | Category | Detail |
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