This term is obsolete.

GO:0000972 JSON

transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery

Biological Process

Definition (GO:0000972 GONUTS page)

The chromosome organization process in which the DNA sequence containing a gene transcribed by RNA polymerase II is maintained in a specific location at the nuclear periphery. In S. cerevisiae, this process involves cis-acting DNA sequences such as the TATA box and upstream activating sequence (UAS) elements, trans-acting transcriptional activators, and also the 3'-UTR of the transcript. PMID:18614049

24,410 annotations

Ancestor Chart

Ancestor chart for GO:0000972
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Child Terms

This table lists all terms that are direct descendants (child terms) of GO:0000972

Child Term Relationship to
GO:0000972
post-transcriptional tethering of RNA polymerase II gene DNA at nuclear periphery
is_a

Co-occurring Terms

These tables show the number of times the term listed in the table has been co-annotated.

No co-occurrence statistics for GO:0000972 based on ALL annotations
The top 100 of 353 co-occurring terms
Co-occurring Term PR S% #Together #Compared
transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery
20,689.75 100.00 9,422 9,422
protein localization to nuclear inner membrane
10,881.07 35.16 4,850 9,222
nuclear pore inner ring
7,758.86 27.66 4,835 12,893
RNA export from nucleus
3,360.53 14.18 4,965 30,568
nuclear pore outer ring
3,293.28 13.33 4,249 26,694
structural constituent of nuclear pore
2,394.48 11.53 9,104 78,664
poly(A)+ mRNA export from nucleus
2,463.54 10.44 4,315 36,239
nuclear pore
1,389.45 6.69 8,879 132,214
nucleocytoplasmic transport
1,350.99 6.15 4,846 74,214
protein import into nucleus
1,161.29 5.60 9,087 161,896
Totals 90309 14659666
No co-occurrence statistics for GO:0000972 based on MANUAL annotations
The top 100 of 186 co-occurring terms
Co-occurring Term PR S% #Together #Compared
transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery
3,777.19 100.00 342 342
RNA export from nucleus
1,109.29 25.99 237 807
protein localization to nuclear inner membrane
1,854.57 23.96 109 222
nuclear pore inner ring
1,714.02 22.88 108 238
structural constituent of nuclear pore
505.61 12.27 204 1,524
nuclear pore outer ring
491.03 9.57 91 700
nuclear pore
311.73 7.50 154 1,866
poly(A)+ mRNA export from nucleus
322.36 7.06 99 1,160
protein import into nucleus
213.38 5.43 201 3,558
ubiquitin binding
130.74 3.27 128 3,698
Totals 2162 77532

Change Log

Timestamp Action Category Detail
2010-11-14 Added DEFINITION The chromosome organization process in which the DNA sequence containing a gene transcribed by RNA polymerase II is maintained in a specific location at the nuclear periphery. In S. cerevisiae, this process involves cis-acting DNA sequences such as the TATA box and upstream activating sequence (UAS) elements, trans-acting transcriptional activators, and also the 3'-UTR of the transcript.
2010-11-14 Deleted DEFINITION The process by which the DNA sequence containing a gene transcribed by RNA polymerase II is maintained in a specific location at the nuclear periphery. In S. cerevisiae, this process involves cis-acting DNA sequences such as the TATA box and upstream activating sequence (UAS) elements, trans-acting transcriptional activators, and also the 3'-UTR of the transcript.
2009-09-12 Added RELATION is a GO:0051276 (chromosome organization)
2009-09-12 Added DEFINITION The process by which the DNA sequence containing a gene transcribed by RNA polymerase II is maintained in a specific location at the nuclear periphery. In S. cerevisiae, this process involves cis-acting DNA sequences such as the TATA box and upstream activating sequence (UAS) elements, trans-acting transcriptional activators, and also the 3'-UTR of the transcript.
2009-09-12 Added TERM transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery
Timestamp Action Category Detail
2009-09-12 Added TERM transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery
Timestamp Action Category Detail
2010-11-14 Added DEFINITION The chromosome organization process in which the DNA sequence containing a gene transcribed by RNA polymerase II is maintained in a specific location at the nuclear periphery. In S. cerevisiae, this process involves cis-acting DNA sequences such as the TATA box and upstream activating sequence (UAS) elements, trans-acting transcriptional activators, and also the 3'-UTR of the transcript.
2010-11-14 Deleted DEFINITION The process by which the DNA sequence containing a gene transcribed by RNA polymerase II is maintained in a specific location at the nuclear periphery. In S. cerevisiae, this process involves cis-acting DNA sequences such as the TATA box and upstream activating sequence (UAS) elements, trans-acting transcriptional activators, and also the 3'-UTR of the transcript.
2009-09-12 Added DEFINITION The process by which the DNA sequence containing a gene transcribed by RNA polymerase II is maintained in a specific location at the nuclear periphery. In S. cerevisiae, this process involves cis-acting DNA sequences such as the TATA box and upstream activating sequence (UAS) elements, trans-acting transcriptional activators, and also the 3'-UTR of the transcript.
Timestamp Action Category Detail
2009-09-12 Added RELATION is a GO:0051276 (chromosome organization)
Timestamp Action Category Detail
Timestamp Action Category Detail
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