This term is obsolete.

GO:0000992 JSON

RNA polymerase III cis-regulatory region sequence-specific DNA binding

Molecular Function

Definition (GO:0000992 GONUTS page)

Binding to a specific upstream regulatory DNA sequence (transcription factor recognition sequence or binding site) located in cis relative to the transcription start site (i.e., on the same strand of DNA) of a gene transcribed by RNA polymerase III. The transcribed region might be contain a single gene or a cistron containing multiple genes. PMID:12381659

24,629 annotations

Ancestor Chart

Ancestor chart for GO:0000992
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Ancestor chart

Child Terms

This table lists all terms that are direct descendants (child terms) of GO:0000992

Child Term Relationship to
GO:0000992
RNA polymerase III type 3 promoter sequence-specific DNA binding
is_a
RNA polymerase III hybrid type promoter sequence-specific DNA binding
is_a
RNA polymerase III type 1 promoter sequence-specific DNA binding
is_a
RNA polymerase III type 2 promoter sequence-specific DNA binding
is_a

Annotation Guidance

Usage of this term is subject to the following annotation guidelines:

Binding term considerations Link
Considerations when annotating from ChiP assay results Link

Annotation Blacklist

This list aims to correct incorrect annotations to UniProtKB accessions inferred from electronic annotation (IEA) methods that are supplied by the UniProt-GOA project to the GO Consortium:

Category Entity Type Entity ID Taxon ID Entity Name Ancestor GO ID Reason Rule/Method ID
IEA Review protein P40999 284812 PMT1M_SCHPO GO:0003677 To remove over-annotation from InterPro entries IPR001525 and IPR018117; for this particular C5-methyltransferase family member, there is a Ser residue in the active site that may be responsible. Reported by InterPro on 19-10-2012
NOT-qualified manual protein A0A0G2K0G0 10116 A0A0G2K0G0_RAT GO:0003677 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096
NOT-qualified manual protein A0A0G2K6Q9 10116 A0A0G2K6Q9_RAT GO:0003690 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096
NOT-qualified manual protein A0A1B0GWQ8 10116 A0A1B0GWQ8_RAT GO:0003677 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096
NOT-qualified manual protein A0A1D8PIK2 237561 A0A1D8PIK2_CANAL GO:0000976 1 NOT-qualified manual annotation exists with evidence code ECO:0000314 from this reference: PMID:20008550
NOT-qualified manual protein A0A8I5Y5Z6 10116 A0A8I5Y5Z6_RAT GO:0003677 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096
NOT-qualified manual protein A0A8I5ZKC5 10116 A0A8I5ZKC5_RAT GO:0003677 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096
NOT-qualified manual protein A0A8I6A2T0 10116 A0A8I6A2T0_RAT GO:0003677 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096
NOT-qualified manual protein A0A8I6A7B9 10116 A0A8I6A7B9_RAT GO:0003677 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096
NOT-qualified manual protein A0A8I6AB42 10116 A0A8I6AB42_RAT GO:0003677 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096

Co-occurring Terms

These tables show the number of times the term listed in the table has been co-annotated.

No co-occurrence statistics for GO:0000992 based on ALL annotations
The top 16 of 16 co-occurring terms
Co-occurring Term PR S% #Together #Compared
RNA polymerase III cis-regulatory region sequence-specific DNA binding
13,924,199.00 100.00 14 14
chromatin insulator sequence binding
129,166.97 0.91 5 539
RNA polymerase III type 2 promoter sequence-specific DNA binding
18,213.47 0.13 6 4,587
termination of RNA polymerase III transcription
15,807.98 0.11 6 5,285
RNA polymerase III type 1 promoter sequence-specific DNA binding
15,151.47 0.11 5 4,595
RNA polymerase III general transcription initiation factor activity
12,646.87 0.09 6 6,606
transcription initiation at RNA polymerase III promoter
7,113.26 0.05 12 23,490
transcription factor TFIIIC complex
3,432.57 0.02 6 24,339
snRNA transcription by RNA polymerase III
1,012.96 0.01 1 13,746
single-stranded RNA binding
857.93 0.01 4 64,920
Totals 94 65413104
No co-occurrence statistics for GO:0000992 based on MANUAL annotations
The top 15 of 15 co-occurring terms
Co-occurring Term PR S% #Together #Compared
RNA polymerase III cis-regulatory region sequence-specific DNA binding
161,474.88 100.00 8 8
termination of RNA polymerase III transcription
6,502.34 3.97 6 149
transcription initiation at RNA polymerase III promoter
3,568.51 2.21 8 362
RNA polymerase III type 2 promoter sequence-specific DNA binding
3,135.43 1.83 2 103
RNA polymerase III type 1 promoter sequence-specific DNA binding
1,583.09 0.92 1 102
RNA polymerase III general transcription initiation factor activity
1,291.80 0.78 2 250
DNA-directed 5'-3' RNA polymerase activity
1,205.04 0.74 6 804
transcription by RNA polymerase III
1,189.06 0.73 5 679
chromatin insulator sequence binding
640.77 0.39 1 252
transcription factor TFIIIC complex
590.40 0.36 2 547
Totals 56 461842

Change Log

Timestamp Action Category Detail
2021-05-24 Deleted DEFINITION Interacting selectively and non-covalently with a specific upstream regulatory DNA sequence (transcription factor recognition sequence or binding site) located in cis relative to the transcription start site (i.e., on the same strand of DNA) of a gene transcribed by RNA polymerase III. The transcribed region might be contain a single gene or a cistron containing multiple genes.
2021-05-24 Added DEFINITION Binding to a specific upstream regulatory DNA sequence (transcription factor recognition sequence or binding site) located in cis relative to the transcription start site (i.e., on the same strand of DNA) of a gene transcribed by RNA polymerase III. The transcribed region might be contain a single gene or a cistron containing multiple genes.
2019-11-01 Deleted DEFINITION Interacting selectively and non-covalently with a sequence of DNA that is part of a regulatory region that controls transcription by RNA polymerase III. The transcribed region might be contain a single gene or a cistron containing multiple genes.
2019-11-01 Added RELATION is a GO:0000987 (cis-regulatory region sequence-specific DNA binding)
2019-11-01 Deleted RELATION is a GO:0000976 (transcription cis-regulatory region binding)
2019-11-01 Added DEFINITION Interacting selectively and non-covalently with a specific upstream regulatory DNA sequence (transcription factor recognition sequence or binding site) located in cis relative to the transcription start site (i.e., on the same strand of DNA) of a gene transcribed by RNA polymerase III. The transcribed region might be contain a single gene or a cistron containing multiple genes.
2019-10-20 Updated TERM RNA polymerase III cis-regulatory region sequence-specific DNA binding
2018-07-12 Deleted RELATION has part GO:0001004 (obsolete RNA polymerase III transcription regulator recruiting activity)
2010-09-03 Added RELATION is a GO:0001016 (RNA polymerase III transcription regulatory region sequence-specific DNA binding)
2010-09-03 Added DEFINITION Interacting selectively and non-covalently with a sequence of DNA that is part of a regulatory region that controls transcription by RNA polymerase III. The transcribed region might be contain a single gene or a cistron containing multiple genes.
Timestamp Action Category Detail
2019-10-20 Updated TERM RNA polymerase III cis-regulatory region sequence-specific DNA binding
2010-09-03 Added TERM polymerase III regulatory region sequence-specific DNA binding
Timestamp Action Category Detail
2021-05-24 Deleted DEFINITION Interacting selectively and non-covalently with a specific upstream regulatory DNA sequence (transcription factor recognition sequence or binding site) located in cis relative to the transcription start site (i.e., on the same strand of DNA) of a gene transcribed by RNA polymerase III. The transcribed region might be contain a single gene or a cistron containing multiple genes.
2021-05-24 Added DEFINITION Binding to a specific upstream regulatory DNA sequence (transcription factor recognition sequence or binding site) located in cis relative to the transcription start site (i.e., on the same strand of DNA) of a gene transcribed by RNA polymerase III. The transcribed region might be contain a single gene or a cistron containing multiple genes.
2019-11-01 Deleted DEFINITION Interacting selectively and non-covalently with a sequence of DNA that is part of a regulatory region that controls transcription by RNA polymerase III. The transcribed region might be contain a single gene or a cistron containing multiple genes.
2019-11-01 Added DEFINITION Interacting selectively and non-covalently with a specific upstream regulatory DNA sequence (transcription factor recognition sequence or binding site) located in cis relative to the transcription start site (i.e., on the same strand of DNA) of a gene transcribed by RNA polymerase III. The transcribed region might be contain a single gene or a cistron containing multiple genes.
2010-09-03 Added DEFINITION Interacting selectively and non-covalently with a sequence of DNA that is part of a regulatory region that controls transcription by RNA polymerase III. The transcribed region might be contain a single gene or a cistron containing multiple genes.
Timestamp Action Category Detail
2019-11-01 Added RELATION is a GO:0000987 (cis-regulatory region sequence-specific DNA binding)
2019-11-01 Deleted RELATION is a GO:0000976 (transcription cis-regulatory region binding)
2018-07-12 Deleted RELATION has part GO:0001004 (obsolete RNA polymerase III transcription regulator recruiting activity)
2010-09-03 Added RELATION is a GO:0001016 (RNA polymerase III transcription regulatory region sequence-specific DNA binding)
2010-09-03 Added RELATION has part GO:0001004 (obsolete RNA polymerase III transcription regulator recruiting activity)
2010-09-03 Added RELATION is a GO:0000976 (transcription cis-regulatory region binding)
Timestamp Action Category Detail
Timestamp Action Category Detail
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