GO:0000992
JSON
RNA polymerase III cis-regulatory region sequence-specific DNA binding
Molecular Function
Definition (GO:0000992 GONUTS page)
Binding to a specific upstream regulatory DNA sequence (transcription factor recognition sequence or binding site) located in cis relative to the transcription start site (i.e., on the same strand of DNA) of a gene transcribed by RNA polymerase III. The transcribed region might be contain a single gene or a cistron containing multiple genes. PMID:12381659
Ancestor Chart
Child Terms
This table lists all terms that are direct descendants (child terms) of GO:0000992
Child Term | Relationship to GO:0000992 |
---|---|
RNA polymerase III type 2 promoter sequence-specific DNA binding
|
is_a |
RNA polymerase III type 1 promoter sequence-specific DNA binding
|
is_a |
RNA polymerase III hybrid type promoter sequence-specific DNA binding
|
is_a |
RNA polymerase III type 3 promoter sequence-specific DNA binding
|
is_a |
Annotation Guidance
Usage of this term is subject to the following annotation guidelines:
Binding term considerations | Link |
Considerations when annotating from ChiP assay results | Link |
Annotation Blacklist
This list aims to correct incorrect annotations to UniProtKB accessions inferred from electronic annotation (IEA) methods that are supplied by the UniProt-GOA project to the GO Consortium:
Category | Entity Type | Entity ID | Taxon ID | Entity Name | Ancestor GO ID | Reason | Rule/Method ID |
---|---|---|---|---|---|---|---|
IEA Review | protein | P40999 | 284812 | PMT1M_SCHPO | GO:0003677 | To remove over-annotation from InterPro entries IPR001525 and IPR018117; for this particular C5-methyltransferase family member, there is a Ser residue in the active site that may be responsible. Reported by InterPro on 19-10-2012 | |
NOT-qualified manual | protein | A0A0G2K0G0 | 10116 | A0A0G2K0G0_RAT | GO:0003677 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | A0A0G2K6Q9 | 10116 | A0A0G2K6Q9_RAT | GO:0003690 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | A0A1B0GWQ8 | 10116 | A0A1B0GWQ8_RAT | GO:0003677 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | A0A1D8PIK2 | 237561 | A0A1D8PIK2_CANAL | GO:0000976 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000314 from this reference: PMID:20008550 | |
NOT-qualified manual | protein | A0A8I5Y5Z6 | 10116 | A0A8I5Y5Z6_RAT | GO:0003677 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | A0A8I5ZKC5 | 10116 | A0A8I5ZKC5_RAT | GO:0003677 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | A0A8I6A2T0 | 10116 | A0A8I6A2T0_RAT | GO:0003677 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | A0A8I6A7B9 | 10116 | A0A8I6A7B9_RAT | GO:0003677 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | A0A8I6AB42 | 10116 | A0A8I6AB42_RAT | GO:0003677 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 |
Co-occurring Terms
These tables show the number of times the term listed in the table has been co-annotated.
No co-occurrence statistics for GO:0000992 based on ALL annotations
The top 16 of 16 co-occurring terms
Co-occurring Term | PR | S% | #Together | #Compared |
---|---|---|---|---|
RNA polymerase III cis-regulatory region sequence-specific DNA binding
|
14,153,919.00 | 100.00 | 14 | 14 |
chromatin insulator sequence binding
|
111,272.95 | 0.78 | 5 | 636 |
RNA polymerase III type 2 promoter sequence-specific DNA binding
|
17,958.03 | 0.13 | 6 | 4,729 |
termination of RNA polymerase III transcription
|
15,712.03 | 0.11 | 6 | 5,405 |
RNA polymerase III type 1 promoter sequence-specific DNA binding
|
14,939.75 | 0.11 | 5 | 4,737 |
RNA polymerase III general transcription initiation factor activity
|
12,448.48 | 0.09 | 6 | 6,822 |
transcription initiation at RNA polymerase III promoter
|
7,004.00 | 0.05 | 12 | 24,250 |
transcription factor TFIIIC complex
|
3,364.24 | 0.02 | 6 | 25,243 |
snRNA transcription by RNA polymerase III
|
982.09 | 0.01 | 1 | 14,412 |
single-stranded RNA binding
|
845.38 | 0.01 | 4 | 66,971 |
Totals | 94 | 66317878 |
No co-occurrence statistics for GO:0000992 based on MANUAL annotations
The top 15 of 15 co-occurring terms
Co-occurring Term | PR | S% | #Together | #Compared |
---|---|---|---|---|
RNA polymerase III cis-regulatory region sequence-specific DNA binding
|
176,441.62 | 100.00 | 8 | 8 |
termination of RNA polymerase III transcription
|
6,874.35 | 3.85 | 6 | 154 |
transcription initiation at RNA polymerase III promoter
|
3,600.85 | 2.04 | 8 | 392 |
RNA polymerase III type 2 promoter sequence-specific DNA binding
|
3,179.13 | 1.71 | 2 | 111 |
RNA polymerase III type 1 promoter sequence-specific DNA binding
|
1,604.01 | 0.85 | 1 | 110 |
RNA polymerase III general transcription initiation factor activity
|
1,367.76 | 0.76 | 2 | 258 |
transcription by RNA polymerase III
|
1,221.89 | 0.69 | 5 | 722 |
DNA-directed 5'-3' RNA polymerase activity
|
1,178.90 | 0.67 | 6 | 898 |
transcription factor TFIIIC complex
|
592.09 | 0.33 | 2 | 596 |
snRNA transcription by RNA polymerase III
|
533.06 | 0.30 | 1 | 331 |
Totals | 56 | 501959 |
Change Log
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Timestamp | Action | Category | Detail |
---|---|---|---|
2021-05-24 | Deleted | DEFINITION | Interacting selectively and non-covalently with a specific upstream regulatory DNA sequence (transcription factor recognition sequence or binding site) located in cis relative to the transcription start site (i.e., on the same strand of DNA) of a gene transcribed by RNA polymerase III. The transcribed region might be contain a single gene or a cistron containing multiple genes. |
2021-05-24 | Added | DEFINITION | Binding to a specific upstream regulatory DNA sequence (transcription factor recognition sequence or binding site) located in cis relative to the transcription start site (i.e., on the same strand of DNA) of a gene transcribed by RNA polymerase III. The transcribed region might be contain a single gene or a cistron containing multiple genes. |
2019-11-01 | Deleted | DEFINITION | Interacting selectively and non-covalently with a sequence of DNA that is part of a regulatory region that controls transcription by RNA polymerase III. The transcribed region might be contain a single gene or a cistron containing multiple genes. |
2019-11-01 | Added | RELATION | is a GO:0000987 (cis-regulatory region sequence-specific DNA binding) |
2019-11-01 | Deleted | RELATION | is a GO:0000976 (transcription cis-regulatory region binding) |
2019-11-01 | Added | DEFINITION | Interacting selectively and non-covalently with a specific upstream regulatory DNA sequence (transcription factor recognition sequence or binding site) located in cis relative to the transcription start site (i.e., on the same strand of DNA) of a gene transcribed by RNA polymerase III. The transcribed region might be contain a single gene or a cistron containing multiple genes. |
2019-10-20 | Updated | TERM | RNA polymerase III cis-regulatory region sequence-specific DNA binding |
2018-07-12 | Deleted | RELATION | has part GO:0001004 (obsolete RNA polymerase III transcription regulator recruiting activity) |
2010-09-03 | Added | RELATION | is a GO:0001016 (RNA polymerase III transcription regulatory region sequence-specific DNA binding) |
2010-09-03 | Added | RELATION | is a GO:0000976 (transcription cis-regulatory region binding) |
Timestamp | Action | Category | Detail |
---|---|---|---|
2019-10-20 | Updated | TERM | RNA polymerase III cis-regulatory region sequence-specific DNA binding |
2010-09-03 | Added | TERM | polymerase III regulatory region sequence-specific DNA binding |
Timestamp | Action | Category | Detail |
---|---|---|---|
2021-05-24 | Deleted | DEFINITION | Interacting selectively and non-covalently with a specific upstream regulatory DNA sequence (transcription factor recognition sequence or binding site) located in cis relative to the transcription start site (i.e., on the same strand of DNA) of a gene transcribed by RNA polymerase III. The transcribed region might be contain a single gene or a cistron containing multiple genes. |
2021-05-24 | Added | DEFINITION | Binding to a specific upstream regulatory DNA sequence (transcription factor recognition sequence or binding site) located in cis relative to the transcription start site (i.e., on the same strand of DNA) of a gene transcribed by RNA polymerase III. The transcribed region might be contain a single gene or a cistron containing multiple genes. |
2019-11-01 | Deleted | DEFINITION | Interacting selectively and non-covalently with a sequence of DNA that is part of a regulatory region that controls transcription by RNA polymerase III. The transcribed region might be contain a single gene or a cistron containing multiple genes. |
2019-11-01 | Added | DEFINITION | Interacting selectively and non-covalently with a specific upstream regulatory DNA sequence (transcription factor recognition sequence or binding site) located in cis relative to the transcription start site (i.e., on the same strand of DNA) of a gene transcribed by RNA polymerase III. The transcribed region might be contain a single gene or a cistron containing multiple genes. |
2010-09-03 | Added | DEFINITION | Interacting selectively and non-covalently with a sequence of DNA that is part of a regulatory region that controls transcription by RNA polymerase III. The transcribed region might be contain a single gene or a cistron containing multiple genes. |
Timestamp | Action | Category | Detail |
---|---|---|---|
2019-11-01 | Added | RELATION | is a GO:0000987 (cis-regulatory region sequence-specific DNA binding) |
2019-11-01 | Deleted | RELATION | is a GO:0000976 (transcription cis-regulatory region binding) |
2018-07-12 | Deleted | RELATION | has part GO:0001004 (obsolete RNA polymerase III transcription regulator recruiting activity) |
2010-09-03 | Added | RELATION | is a GO:0001016 (RNA polymerase III transcription regulatory region sequence-specific DNA binding) |
2010-09-03 | Added | RELATION | is a GO:0000976 (transcription cis-regulatory region binding) |
2010-09-03 | Added | RELATION | has part GO:0001004 (obsolete RNA polymerase III transcription regulator recruiting activity) |
Timestamp | Action | Category | Detail |
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Timestamp | Action | Category | Detail |
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