This term is obsolete.

GO:0001003 JSON

RNA polymerase III type 2 promoter sequence-specific DNA binding

Molecular Function

Definition (GO:0001003 GONUTS page)

Binding to a sequence of DNA that is a part of a type 2 promoter that controls transcription by RNA polymerase III. Type 2 promoters consist of an A box and a B box downstream of the transcription start site within the sequence within the sequence of the mature RNA. Type 2 promoters are found in many tRNA genes as well as in other small RNAs. PMID:12381659

Secondary IDs

GO:0001031

4,589 annotations

Synonyms

Synonyms are alternative words or phrases closely related in meaning to the term name, with indication of the relationship between the name and synonym given by the synonym scope.

Synonym Type
RNA polymerase III type 2 promoter DNA binding related

Ancestor Chart

Ancestor chart for GO:0001003
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Ancestor chart

Annotation Guidance

Usage of this term is subject to the following annotation guidelines:

Binding term considerations Link
Considerations when annotating from ChiP assay results Link

Annotation Blacklist

This list aims to correct incorrect annotations to UniProtKB accessions inferred from electronic annotation (IEA) methods that are supplied by the UniProt-GOA project to the GO Consortium:

Category Entity Type Entity ID Taxon ID Entity Name Ancestor GO ID Reason Rule/Method ID
IEA Review protein P40999 284812 PMT1M_SCHPO GO:0003677 To remove over-annotation from InterPro entries IPR001525 and IPR018117; for this particular C5-methyltransferase family member, there is a Ser residue in the active site that may be responsible. Reported by InterPro on 19-10-2012
NOT-qualified manual protein A0A0G2K0G0 10116 A0A0G2K0G0_RAT GO:0003677 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096
NOT-qualified manual protein A0A0G2K6Q9 10116 A0A0G2K6Q9_RAT GO:0003690 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096
NOT-qualified manual protein A0A1B0GWQ8 10116 A0A1B0GWQ8_RAT GO:0003677 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096
NOT-qualified manual protein A0A1D8PIK2 237561 A0A1D8PIK2_CANAL GO:0000976 1 NOT-qualified manual annotation exists with evidence code ECO:0000314 from this reference: PMID:20008550
NOT-qualified manual protein A0A8I5Y5Z6 10116 A0A8I5Y5Z6_RAT GO:0003677 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096
NOT-qualified manual protein A0A8I5ZKC5 10116 A0A8I5ZKC5_RAT GO:0003677 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096
NOT-qualified manual protein A0A8I6A2T0 10116 A0A8I6A2T0_RAT GO:0003677 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096
NOT-qualified manual protein A0A8I6A7B9 10116 A0A8I6A7B9_RAT GO:0003677 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096
NOT-qualified manual protein A0A8I6AB42 10116 A0A8I6AB42_RAT GO:0003677 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096

Co-occurring Terms

These tables show the number of times the term listed in the table has been co-annotated.

No co-occurrence statistics for GO:0001003 based on ALL annotations
The top 100 of 269 co-occurring terms
Co-occurring Term PR S% #Together #Compared
RNA polymerase III type 2 promoter sequence-specific DNA binding
42,498.10 100.00 4,587 4,587
RNA polymerase III type 1 promoter sequence-specific DNA binding
42,313.13 99.31 4,575 4,595
transcription initiation at RNA polymerase III promoter
7,897.16 18.41 4,365 23,490
transcription factor TFIIIC complex
7,686.29 17.95 4,402 24,339
negative regulation of lysosome organization
13,087.65 1.86 89 289
cardiac cell development
42,498.10 1.83 84 84
cellular response to methionine
9,953.50 1.82 89 380
positive regulation of wound healing, spreading of epidermal cells
9,953.50 1.82 89 380
T-helper 1 cell lineage commitment
11,781.65 1.75 84 303
regulation of locomotor rhythm
10,377.44 1.73 84 344
Totals 25710 1555446
No co-occurrence statistics for GO:0001003 based on MANUAL annotations
The top 100 of 199 co-occurring terms
Co-occurring Term PR S% #Together #Compared
RNA polymerase III type 2 promoter sequence-specific DNA binding
12,541.74 100.00 103 103
RNA polymerase III type 1 promoter sequence-specific DNA binding
12,418.78 97.12 101 102
transcription factor TFIIIC complex
2,224.04 17.54 97 547
5S class rRNA transcription by RNA polymerase III
844.16 3.50 7 104
transcription initiation at RNA polymerase III promoter
311.81 1.97 9 362
RNA polymerase III cis-regulatory region sequence-specific DNA binding
3,135.43 1.83 2 8
negative regulation of lysosome organization
2,090.29 1.77 2 12
RNA polymerase III general transcription initiation factor activity
301.00 1.73 6 250
cellular response to methionine
1,475.50 1.69 2 17
positive regulation of wound healing, spreading of epidermal cells
1,393.53 1.68 2 18
Totals 467 12402

Change Log

Timestamp Action Category Detail
2021-05-24 Added DEFINITION Binding to a sequence of DNA that is a part of a type 2 promoter that controls transcription by RNA polymerase III. Type 2 promoters consist of an A box and a B box downstream of the transcription start site within the sequence within the sequence of the mature RNA. Type 2 promoters are found in many tRNA genes as well as in other small RNAs.
2021-05-24 Deleted DEFINITION Interacting selectively and non-covalently with a sequence of DNA that is a part of a type 2 promoter that controls transcription by RNA polymerase III. Type 2 promoters consist of an A box and a B box downstream of the transcription start site within the sequence within the sequence of the mature RNA. Type 2 promoters are found in many tRNA genes as well as in other small RNAs.
2020-04-29 Added SYNONYM RNA polymerase III type 2 promoter DNA binding
2020-04-29 Added SECONDARY GO:0001031 (RNA polymerase III type 2 promoter DNA binding)
2020-04-29 Deleted RELATION is a GO:0001031 (RNA polymerase III type 2 promoter DNA binding)
2018-01-14 Deleted RELATION has part GO:0001008 (transcription factor activity, RNA polymerase III type 2 promoter sequence-specific binding, TFIIIB recruiting)
2010-09-03 Added RELATION is a GO:0001031 (RNA polymerase III type 2 promoter DNA binding)
2010-09-03 Added RELATION has part GO:0001008 (transcription factor activity, RNA polymerase III type 2 promoter sequence-specific binding, TFIIIB recruiting)
2010-09-03 Added RELATION is a GO:0000992 (RNA polymerase III cis-regulatory region sequence-specific DNA binding)
2010-09-03 Added DEFINITION Interacting selectively and non-covalently with a sequence of DNA that is a part of a type 2 promoter that controls transcription by RNA polymerase III. Type 2 promoters consist of an A box and a B box downstream of the transcription start site within the sequence within the sequence of the mature RNA. Type 2 promoters are found in many tRNA genes as well as in other small RNAs.
Timestamp Action Category Detail
2010-09-03 Added TERM RNA polymerase III type 2 promoter sequence-specific DNA binding
Timestamp Action Category Detail
2021-05-24 Added DEFINITION Binding to a sequence of DNA that is a part of a type 2 promoter that controls transcription by RNA polymerase III. Type 2 promoters consist of an A box and a B box downstream of the transcription start site within the sequence within the sequence of the mature RNA. Type 2 promoters are found in many tRNA genes as well as in other small RNAs.
2021-05-24 Deleted DEFINITION Interacting selectively and non-covalently with a sequence of DNA that is a part of a type 2 promoter that controls transcription by RNA polymerase III. Type 2 promoters consist of an A box and a B box downstream of the transcription start site within the sequence within the sequence of the mature RNA. Type 2 promoters are found in many tRNA genes as well as in other small RNAs.
2020-04-29 Added SYNONYM RNA polymerase III type 2 promoter DNA binding
2010-09-03 Added DEFINITION Interacting selectively and non-covalently with a sequence of DNA that is a part of a type 2 promoter that controls transcription by RNA polymerase III. Type 2 promoters consist of an A box and a B box downstream of the transcription start site within the sequence within the sequence of the mature RNA. Type 2 promoters are found in many tRNA genes as well as in other small RNAs.
Timestamp Action Category Detail
2020-04-29 Deleted RELATION is a GO:0001031 (RNA polymerase III type 2 promoter DNA binding)
2018-01-14 Deleted RELATION has part GO:0001008 (transcription factor activity, RNA polymerase III type 2 promoter sequence-specific binding, TFIIIB recruiting)
2010-09-03 Added RELATION is a GO:0001031 (RNA polymerase III type 2 promoter DNA binding)
2010-09-03 Added RELATION has part GO:0001008 (transcription factor activity, RNA polymerase III type 2 promoter sequence-specific binding, TFIIIB recruiting)
2010-09-03 Added RELATION is a GO:0000992 (RNA polymerase III cis-regulatory region sequence-specific DNA binding)
Timestamp Action Category Detail
Timestamp Action Category Detail
2020-04-29 Added SECONDARY GO:0001031 (RNA polymerase III type 2 promoter DNA binding)
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