GO:0001003
JSON
RNA polymerase III type 2 promoter sequence-specific DNA binding
Molecular Function
Definition (GO:0001003 GONUTS page)
Binding to a sequence of DNA that is a part of a type 2 promoter that controls transcription by RNA polymerase III. Type 2 promoters consist of an A box and a B box downstream of the transcription start site within the sequence within the sequence of the mature RNA. Type 2 promoters are found in many tRNA genes as well as in other small RNAs. PMID:12381659
Secondary IDs
GO:0001031
Synonyms
Synonyms are alternative words or phrases closely related in meaning to the term name, with indication of the relationship between the name and synonym given by the synonym scope.
Synonym | Type |
---|---|
RNA polymerase III type 2 promoter DNA binding | related |
Ancestor Chart
Annotation Guidance
Usage of this term is subject to the following annotation guidelines:
Binding term considerations | Link |
Considerations when annotating from ChiP assay results | Link |
Annotation Blacklist
This list aims to correct incorrect annotations to UniProtKB accessions inferred from electronic annotation (IEA) methods that are supplied by the UniProt-GOA project to the GO Consortium:
Category | Entity Type | Entity ID | Taxon ID | Entity Name | Ancestor GO ID | Reason | Rule/Method ID |
---|---|---|---|---|---|---|---|
IEA Review | protein | P40999 | 284812 | PMT1M_SCHPO | GO:0003677 | To remove over-annotation from InterPro entries IPR001525 and IPR018117; for this particular C5-methyltransferase family member, there is a Ser residue in the active site that may be responsible. Reported by InterPro on 19-10-2012 | |
NOT-qualified manual | protein | A0A0G2K0G0 | 10116 | A0A0G2K0G0_RAT | GO:0003677 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | A0A0G2K6Q9 | 10116 | A0A0G2K6Q9_RAT | GO:0003690 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | A0A1B0GWQ8 | 10116 | A0A1B0GWQ8_RAT | GO:0003677 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | A0A1D8PIK2 | 237561 | A0A1D8PIK2_CANAL | GO:0000976 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000314 from this reference: PMID:20008550 | |
NOT-qualified manual | protein | A0A8I5Y5Z6 | 10116 | A0A8I5Y5Z6_RAT | GO:0003677 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | A0A8I5ZKC5 | 10116 | A0A8I5ZKC5_RAT | GO:0003677 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | A0A8I6A2T0 | 10116 | A0A8I6A2T0_RAT | GO:0003677 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | A0A8I6A7B9 | 10116 | A0A8I6A7B9_RAT | GO:0003677 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | A0A8I6AB42 | 10116 | A0A8I6AB42_RAT | GO:0003677 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 |
Co-occurring Terms
These tables show the number of times the term listed in the table has been co-annotated.
No co-occurrence statistics for GO:0001003 based on ALL annotations
The top 100 of 269 co-occurring terms
Co-occurring Term | PR | S% | #Together | #Compared |
---|---|---|---|---|
RNA polymerase III type 2 promoter sequence-specific DNA binding
|
42,498.10 | 100.00 | 4,587 | 4,587 |
RNA polymerase III type 1 promoter sequence-specific DNA binding
|
42,313.13 | 99.31 | 4,575 | 4,595 |
transcription initiation at RNA polymerase III promoter
|
7,897.16 | 18.41 | 4,365 | 23,490 |
transcription factor TFIIIC complex
|
7,686.29 | 17.95 | 4,402 | 24,339 |
negative regulation of lysosome organization
|
13,087.65 | 1.86 | 89 | 289 |
cardiac cell development
|
42,498.10 | 1.83 | 84 | 84 |
cellular response to methionine
|
9,953.50 | 1.82 | 89 | 380 |
positive regulation of wound healing, spreading of epidermal cells
|
9,953.50 | 1.82 | 89 | 380 |
T-helper 1 cell lineage commitment
|
11,781.65 | 1.75 | 84 | 303 |
regulation of locomotor rhythm
|
10,377.44 | 1.73 | 84 | 344 |
Totals | 25710 | 1555446 |
No co-occurrence statistics for GO:0001003 based on MANUAL annotations
The top 100 of 199 co-occurring terms
Co-occurring Term | PR | S% | #Together | #Compared |
---|---|---|---|---|
RNA polymerase III type 2 promoter sequence-specific DNA binding
|
12,541.74 | 100.00 | 103 | 103 |
RNA polymerase III type 1 promoter sequence-specific DNA binding
|
12,418.78 | 97.12 | 101 | 102 |
transcription factor TFIIIC complex
|
2,224.04 | 17.54 | 97 | 547 |
5S class rRNA transcription by RNA polymerase III
|
844.16 | 3.50 | 7 | 104 |
transcription initiation at RNA polymerase III promoter
|
311.81 | 1.97 | 9 | 362 |
RNA polymerase III cis-regulatory region sequence-specific DNA binding
|
3,135.43 | 1.83 | 2 | 8 |
negative regulation of lysosome organization
|
2,090.29 | 1.77 | 2 | 12 |
RNA polymerase III general transcription initiation factor activity
|
301.00 | 1.73 | 6 | 250 |
cellular response to methionine
|
1,475.50 | 1.69 | 2 | 17 |
positive regulation of wound healing, spreading of epidermal cells
|
1,393.53 | 1.68 | 2 | 18 |
Totals | 467 | 12402 |
Change Log
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Timestamp | Action | Category | Detail |
---|---|---|---|
2021-05-24 | Added | DEFINITION | Binding to a sequence of DNA that is a part of a type 2 promoter that controls transcription by RNA polymerase III. Type 2 promoters consist of an A box and a B box downstream of the transcription start site within the sequence within the sequence of the mature RNA. Type 2 promoters are found in many tRNA genes as well as in other small RNAs. |
2021-05-24 | Deleted | DEFINITION | Interacting selectively and non-covalently with a sequence of DNA that is a part of a type 2 promoter that controls transcription by RNA polymerase III. Type 2 promoters consist of an A box and a B box downstream of the transcription start site within the sequence within the sequence of the mature RNA. Type 2 promoters are found in many tRNA genes as well as in other small RNAs. |
2020-04-29 | Added | SYNONYM | RNA polymerase III type 2 promoter DNA binding |
2020-04-29 | Added | SECONDARY | GO:0001031 (RNA polymerase III type 2 promoter DNA binding) |
2020-04-29 | Deleted | RELATION | is a GO:0001031 (RNA polymerase III type 2 promoter DNA binding) |
2018-01-14 | Deleted | RELATION | has part GO:0001008 (transcription factor activity, RNA polymerase III type 2 promoter sequence-specific binding, TFIIIB recruiting) |
2010-09-03 | Added | RELATION | is a GO:0001031 (RNA polymerase III type 2 promoter DNA binding) |
2010-09-03 | Added | RELATION | has part GO:0001008 (transcription factor activity, RNA polymerase III type 2 promoter sequence-specific binding, TFIIIB recruiting) |
2010-09-03 | Added | RELATION | is a GO:0000992 (RNA polymerase III cis-regulatory region sequence-specific DNA binding) |
2010-09-03 | Added | DEFINITION | Interacting selectively and non-covalently with a sequence of DNA that is a part of a type 2 promoter that controls transcription by RNA polymerase III. Type 2 promoters consist of an A box and a B box downstream of the transcription start site within the sequence within the sequence of the mature RNA. Type 2 promoters are found in many tRNA genes as well as in other small RNAs. |
Timestamp | Action | Category | Detail |
---|---|---|---|
2010-09-03 | Added | TERM | RNA polymerase III type 2 promoter sequence-specific DNA binding |
Timestamp | Action | Category | Detail |
---|---|---|---|
2021-05-24 | Added | DEFINITION | Binding to a sequence of DNA that is a part of a type 2 promoter that controls transcription by RNA polymerase III. Type 2 promoters consist of an A box and a B box downstream of the transcription start site within the sequence within the sequence of the mature RNA. Type 2 promoters are found in many tRNA genes as well as in other small RNAs. |
2021-05-24 | Deleted | DEFINITION | Interacting selectively and non-covalently with a sequence of DNA that is a part of a type 2 promoter that controls transcription by RNA polymerase III. Type 2 promoters consist of an A box and a B box downstream of the transcription start site within the sequence within the sequence of the mature RNA. Type 2 promoters are found in many tRNA genes as well as in other small RNAs. |
2020-04-29 | Added | SYNONYM | RNA polymerase III type 2 promoter DNA binding |
2010-09-03 | Added | DEFINITION | Interacting selectively and non-covalently with a sequence of DNA that is a part of a type 2 promoter that controls transcription by RNA polymerase III. Type 2 promoters consist of an A box and a B box downstream of the transcription start site within the sequence within the sequence of the mature RNA. Type 2 promoters are found in many tRNA genes as well as in other small RNAs. |
Timestamp | Action | Category | Detail |
---|---|---|---|
2020-04-29 | Deleted | RELATION | is a GO:0001031 (RNA polymerase III type 2 promoter DNA binding) |
2018-01-14 | Deleted | RELATION | has part GO:0001008 (transcription factor activity, RNA polymerase III type 2 promoter sequence-specific binding, TFIIIB recruiting) |
2010-09-03 | Added | RELATION | is a GO:0001031 (RNA polymerase III type 2 promoter DNA binding) |
2010-09-03 | Added | RELATION | has part GO:0001008 (transcription factor activity, RNA polymerase III type 2 promoter sequence-specific binding, TFIIIB recruiting) |
2010-09-03 | Added | RELATION | is a GO:0000992 (RNA polymerase III cis-regulatory region sequence-specific DNA binding) |
Timestamp | Action | Category | Detail |
---|
Timestamp | Action | Category | Detail |
---|---|---|---|
2020-04-29 | Added | SECONDARY | GO:0001031 (RNA polymerase III type 2 promoter DNA binding) |
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