This term is obsolete.

GO:0001018 JSON

mitochondrial promoter sequence-specific DNA binding

Molecular Function

Definition (GO:0001018 GONUTS page)

Binding to a DNA region that controls the transcription of the mitochondrial DNA. PMID:20056105

Secondary IDs

GO:0000997, GO:0001044, GO:0001045, GO:0070361, GO:0070362, GO:0070363, GO:0070364

4,195 annotations

Synonyms

Synonyms are alternative words or phrases closely related in meaning to the term name, with indication of the relationship between the name and synonym given by the synonym scope.

Synonym Type
LSPs binding narrow
mitochondrial heavy strand promoter sense binding narrow
mitochondrial RNA polymerase core promoter sequence-specific DNA binding related
mitochondrial RNA polymerase regulatory region sequence-specific DNA binding related
LSP coding strand binding narrow
HSPs binding narrow
mitochondrial proximal promoter sequence-specific DNA binding related
LSPas binding narrow
mitochondrial RNA polymerase core promoter proximal region sequence-specific DNA binding related
LSP non-coding strand binding narrow

Ancestor Chart

Ancestor chart for GO:0001018
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Ancestor chart

Annotation Guidance

Usage of this term is subject to the following annotation guidelines:

Binding term considerations Link
Considerations when annotating from ChiP assay results Link

Annotation Blacklist

This list aims to correct incorrect annotations to UniProtKB accessions inferred from electronic annotation (IEA) methods that are supplied by the UniProt-GOA project to the GO Consortium:

Category Entity Type Entity ID Taxon ID Entity Name Ancestor GO ID Reason Rule/Method ID
IEA Review protein P40999 284812 PMT1M_SCHPO GO:0003677 To remove over-annotation from InterPro entries IPR001525 and IPR018117; for this particular C5-methyltransferase family member, there is a Ser residue in the active site that may be responsible. Reported by InterPro on 19-10-2012
NOT-qualified manual protein A0A0G2K0G0 10116 A0A0G2K0G0_RAT GO:0003677 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096
NOT-qualified manual protein A0A0G2K6Q9 10116 A0A0G2K6Q9_RAT GO:0003690 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096
NOT-qualified manual protein A0A1B0GWQ8 10116 A0A1B0GWQ8_RAT GO:0003677 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096
NOT-qualified manual protein A0A1D8PIK2 237561 A0A1D8PIK2_CANAL GO:0000976 1 NOT-qualified manual annotation exists with evidence code ECO:0000314 from this reference: PMID:20008550
NOT-qualified manual protein A0A8I5Y5Z6 10116 A0A8I5Y5Z6_RAT GO:0003677 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096
NOT-qualified manual protein A0A8I5ZKC5 10116 A0A8I5ZKC5_RAT GO:0003677 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096
NOT-qualified manual protein A0A8I6A2T0 10116 A0A8I6A2T0_RAT GO:0003677 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096
NOT-qualified manual protein A0A8I6A7B9 10116 A0A8I6A7B9_RAT GO:0003677 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096
NOT-qualified manual protein A0A8I6AB42 10116 A0A8I6AB42_RAT GO:0003677 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096

Co-occurring Terms

These tables show the number of times the term listed in the table has been co-annotated.

No co-occurrence statistics for GO:0001018 based on ALL annotations
The top 100 of 151 co-occurring terms
Co-occurring Term PR S% #Together #Compared
mitochondrial promoter sequence-specific DNA binding
47,405.47 100.00 4,180 4,180
mitochondrial DNA-directed RNA polymerase complex
25,818.13 53.09 3,991 7,328
mitochondrial transcription
1,308.20 2.76 4,073 147,594
transcription initiation at mitochondrial promoter
2,306.09 2.49 203 4,173
obsolete mitochondrial single subunit type RNA polymerase activity
799.58 1.67 2,388 141,580
PH domain binding
4,844.90 1.37 65 636
mitochondrial transcription factor activity
936.24 0.99 82 4,152
mitochondrial nucleoid
508.25 0.93 265 24,717
oxidation-dependent protein catabolic process
854.15 0.83 64 3,552
DNA-directed RNA polymerase activity
379.27 0.80 4,031 503,841
Totals 69941 66659794
No co-occurrence statistics for GO:0001018 based on MANUAL annotations
The top 70 of 70 co-occurring terms
Co-occurring Term PR S% #Together #Compared
mitochondrial promoter sequence-specific DNA binding
20,164.76 100.00 70 70
mitochondrial DNA-directed RNA polymerase complex
5,650.03 26.48 58 207
mitochondrial transcription
4,174.23 20.38 65 314
transcription initiation at mitochondrial promoter
2,545.07 8.13 13 103
DNA-directed RNA polymerase activity
1,302.40 6.37 58 898
mitochondrial transcription factor activity
1,833.16 5.33 8 88
oxidation-dependent protein catabolic process
20,164.76 2.86 2 2
mitochondrial nucleoid
459.78 2.09 14 614
PH domain binding
1,186.16 1.96 2 34
obsolete DNA primase activity
429.04 1.73 6 282
Totals 452 953132

Change Log

Timestamp Action Category Detail
2021-05-24 Deleted DEFINITION Interacting selectively and non-covalently with a DNA region that controls the transcription of the mitochondrial DNA.
2021-05-24 Added DEFINITION Binding to a DNA region that controls the transcription of the mitochondrial DNA.
2020-04-29 Deleted RELATION is a GO:0044212 (transcription regulatory region DNA binding)
2020-04-29 Added RELATION is a GO:0000976 (transcription cis-regulatory region binding)
2018-03-21 Deleted RELATION has part GO:0001142 (mitochondrial RNA polymerase transcription factor activity, sequence-specific DNA binding)
2017-11-08 Deleted RELATION has part GO:0001144 (transcription factor activity, mitochondrial proximal promoter sequence-specific binding)
2017-11-08 Deleted RELATION has part GO:0001143 (transcription factor activity, mitochondrial RNA polymerase core promoter sequence-specific DNA binding)
2017-11-04 Added SYNONYM HSPs binding
2017-11-04 Added SYNONYM mitochondrial proximal promoter sequence-specific DNA binding
2017-11-04 Added SYNONYM LSPas binding
Timestamp Action Category Detail
2017-11-04 Updated TERM mitochondrial promoter sequence-specific DNA binding
2010-09-03 Added TERM mitochondrial RNA polymerase regulatory region DNA binding
Timestamp Action Category Detail
2021-05-24 Deleted DEFINITION Interacting selectively and non-covalently with a DNA region that controls the transcription of the mitochondrial DNA.
2021-05-24 Added DEFINITION Binding to a DNA region that controls the transcription of the mitochondrial DNA.
2017-11-04 Added SYNONYM HSPs binding
2017-11-04 Added SYNONYM mitochondrial proximal promoter sequence-specific DNA binding
2017-11-04 Added SYNONYM LSPas binding
2017-11-04 Added SYNONYM mitochondrial RNA polymerase core promoter proximal region sequence-specific DNA binding
2017-11-04 Deleted DEFINITION Interacting selectively and non-covalently with a DNA region that controls the transcription of a region of DNA by mitochondrial RNA polymerase. Binding may occur as a high affinity and sequence specific interaction or as a lower affinity interaction observed once a factor has been recruited to the DNA by other factors.
2017-11-04 Added DEFINITION Interacting selectively and non-covalently with a DNA region that controls the transcription of the mitochondrial DNA.
2017-11-04 Added SYNONYM LSP coding strand binding
2017-11-04 Added SYNONYM mitochondrial RNA polymerase regulatory region sequence-specific DNA binding
2017-11-04 Added SYNONYM mitochondrial RNA polymerase core promoter sequence-specific DNA binding
2017-11-04 Added SYNONYM mitochondrial heavy strand promoter sense binding
2017-11-04 Added SYNONYM LSPs binding
2017-11-04 Added SYNONYM LSP non-coding strand binding
2017-11-04 Added SYNONYM HSPas binding
2017-11-04 Added SYNONYM mitochondrial light strand promoter anti-sense binding
2017-11-04 Added SYNONYM HSP non-coding strand binding
2017-11-04 Added SYNONYM HSP coding strand binding
2017-11-04 Added SYNONYM mitochondrial RNA polymerase regulatory region DNA binding
2017-11-04 Added SYNONYM mitochondrial heavy strand promoter anti-sense binding
2017-11-04 Added SYNONYM mitochondrial light strand promoter sense binding
2012-10-29 Added DEFINITION Interacting selectively and non-covalently with a DNA region that controls the transcription of a region of DNA by mitochondrial RNA polymerase. Binding may occur as a high affinity and sequence specific interaction or as a lower affinity interaction observed once a factor has been recruited to the DNA by other factors.
2012-10-29 Deleted DEFINITION Interacting selectively with a DNA region that controls the transcription of a region of DNA by mitochondrial RNA polymerase. Binding may occur as a high affinity and sequence specific interaction or as a lower affinity interaction observed once a factor has been recruited to the DNA by other factors.
2010-09-03 Added DEFINITION Interacting selectively with a DNA region that controls the transcription of a region of DNA by mitochondrial RNA polymerase. Binding may occur as a high affinity and sequence specific interaction or as a lower affinity interaction observed once a factor has been recruited to the DNA by other factors.
Timestamp Action Category Detail
2020-04-29 Deleted RELATION is a GO:0044212 (transcription regulatory region DNA binding)
2020-04-29 Added RELATION is a GO:0000976 (transcription cis-regulatory region binding)
2018-03-21 Deleted RELATION has part GO:0001142 (mitochondrial RNA polymerase transcription factor activity, sequence-specific DNA binding)
2017-11-08 Deleted RELATION has part GO:0001144 (transcription factor activity, mitochondrial proximal promoter sequence-specific binding)
2017-11-08 Deleted RELATION has part GO:0001143 (transcription factor activity, mitochondrial RNA polymerase core promoter sequence-specific DNA binding)
2017-11-04 Added RELATION has part GO:0001142 (mitochondrial RNA polymerase transcription factor activity, sequence-specific DNA binding)
2017-11-04 Added RELATION has part GO:0001143 (transcription factor activity, mitochondrial RNA polymerase core promoter sequence-specific DNA binding)
2017-11-04 Added RELATION has part GO:0001144 (transcription factor activity, mitochondrial proximal promoter sequence-specific binding)
2017-11-04 Added RELATION has part GO:0034246 (mitochondrial transcription factor activity)
2010-09-03 Added RELATION is a GO:0044212 (transcription regulatory region DNA binding)
Timestamp Action Category Detail
Timestamp Action Category Detail
2017-11-04 Added SECONDARY GO:0001044 (mitochondrial RNA polymerase regulatory region sequence-specific DNA binding)
2017-11-04 Added SECONDARY GO:0001045 (mitochondrial proximal promoter sequence-specific DNA binding)
2017-11-04 Added SECONDARY GO:0000997 (mitochondrial RNA polymerase core promoter sequence-specific DNA binding)
2017-11-04 Added SECONDARY GO:0070361 (mitochondrial light strand promoter anti-sense binding)
2017-11-04 Added SECONDARY GO:0070362 (mitochondrial heavy strand promoter anti-sense binding)
2017-11-04 Added SECONDARY GO:0070363 (mitochondrial light strand promoter sense binding)
2017-11-04 Added SECONDARY GO:0070364 (mitochondrial heavy strand promoter sense binding)
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