GO:0001018
JSON
mitochondrial promoter sequence-specific DNA binding
Molecular Function
Definition (GO:0001018 GONUTS page)
Binding to a DNA region that controls the transcription of the mitochondrial DNA. PMID:20056105
Secondary IDs
GO:0000997, GO:0001044, GO:0001045, GO:0070361, GO:0070362, GO:0070363, GO:0070364
Synonyms
Synonyms are alternative words or phrases closely related in meaning to the term name, with indication of the relationship between the name and synonym given by the synonym scope.
Synonym | Type |
---|---|
HSP non-coding strand binding | narrow |
mitochondrial light strand promoter anti-sense binding | narrow |
HSPas binding | narrow |
LSP non-coding strand binding | narrow |
LSPs binding | narrow |
mitochondrial heavy strand promoter sense binding | narrow |
mitochondrial RNA polymerase core promoter sequence-specific DNA binding | related |
mitochondrial RNA polymerase regulatory region sequence-specific DNA binding | related |
LSP coding strand binding | narrow |
HSP coding strand binding | narrow |
Ancestor Chart
Annotation Guidance
Usage of this term is subject to the following annotation guidelines:
Binding term considerations | Link |
Considerations when annotating from ChiP assay results | Link |
Annotation Blacklist
This list aims to correct incorrect annotations to UniProtKB accessions inferred from electronic annotation (IEA) methods that are supplied by the UniProt-GOA project to the GO Consortium:
Category | Entity Type | Entity ID | Taxon ID | Entity Name | Ancestor GO ID | Reason | Rule/Method ID |
---|---|---|---|---|---|---|---|
IEA Review | protein | P40999 | 284812 | PMT1M_SCHPO | GO:0003677 | To remove over-annotation from InterPro entries IPR001525 and IPR018117; for this particular C5-methyltransferase family member, there is a Ser residue in the active site that may be responsible. Reported by InterPro on 19-10-2012 | |
NOT-qualified manual | protein | A0A0G2K0G0 | 10116 | A0A0G2K0G0_RAT | GO:0003677 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | A0A0G2K6Q9 | 10116 | A0A0G2K6Q9_RAT | GO:0003690 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | A0A1B0GWQ8 | 10116 | A0A1B0GWQ8_RAT | GO:0003677 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | A0A1D8PIK2 | 237561 | A0A1D8PIK2_CANAL | GO:0000976 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000314 from this reference: PMID:20008550 | |
NOT-qualified manual | protein | A0A8I5Y5Z6 | 10116 | A0A8I5Y5Z6_RAT | GO:0003677 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | A0A8I5ZKC5 | 10116 | A0A8I5ZKC5_RAT | GO:0003677 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | A0A8I6A2T0 | 10116 | A0A8I6A2T0_RAT | GO:0003677 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | A0A8I6A7B9 | 10116 | A0A8I6A7B9_RAT | GO:0003677 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | A0A8I6AB42 | 10116 | A0A8I6AB42_RAT | GO:0003677 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 |
Co-occurring Terms
These tables show the number of times the term listed in the table has been co-annotated.
No co-occurrence statistics for GO:0001018 based on ALL annotations
The top 100 of 154 co-occurring terms
Co-occurring Term | PR | S% | #Together | #Compared |
---|---|---|---|---|
mitochondrial promoter sequence-specific DNA binding
|
47,604.10 | 100.00 | 4,095 | 4,095 |
mitochondrial DNA-directed RNA polymerase complex
|
26,608.70 | 54.42 | 3,906 | 6,988 |
mitochondrial transcription
|
1,289.17 | 2.71 | 3,988 | 147,262 |
transcription initiation at mitochondrial promoter
|
2,335.82 | 2.51 | 200 | 4,076 |
mitochondrial single subunit type RNA polymerase activity
|
810.93 | 1.68 | 2,414 | 141,710 |
PH domain binding
|
4,865.20 | 1.39 | 65 | 636 |
mitochondrial transcription factor activity
|
963.60 | 1.02 | 82 | 4,051 |
mitochondrial nucleoid
|
516.02 | 0.94 | 262 | 24,170 |
oxidation-dependent protein catabolic process
|
880.54 | 0.85 | 64 | 3,460 |
DNA-directed 5'-3' RNA polymerase activity
|
379.02 | 0.80 | 3,946 | 495,607 |
Totals | 69365 | 48792756 |
No co-occurrence statistics for GO:0001018 based on MANUAL annotations
The top 75 of 75 co-occurring terms
Co-occurring Term | PR | S% | #Together | #Compared |
---|---|---|---|---|
mitochondrial promoter sequence-specific DNA binding
|
19,280.58 | 100.00 | 67 | 67 |
mitochondrial DNA-directed RNA polymerase complex
|
5,275.78 | 25.82 | 55 | 201 |
mitochondrial transcription
|
3,945.20 | 20.13 | 62 | 303 |
transcription initiation at mitochondrial promoter
|
2,481.66 | 8.39 | 13 | 101 |
DNA-directed 5'-3' RNA polymerase activity
|
1,318.95 | 6.74 | 55 | 804 |
mitochondrial transcription factor activity
|
1,836.25 | 5.59 | 8 | 84 |
oxidation-dependent protein catabolic process
|
19,280.58 | 2.99 | 2 | 2 |
DNA primase activity
|
723.02 | 2.71 | 6 | 160 |
mitochondrial nucleoid
|
471.90 | 2.24 | 14 | 572 |
PH domain binding
|
1,134.15 | 2.02 | 2 | 34 |
Totals | 440 | 851437 |
Change Log
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Timestamp | Action | Category | Detail |
---|---|---|---|
2021-05-24 | Added | DEFINITION | Binding to a DNA region that controls the transcription of the mitochondrial DNA. |
2021-05-24 | Deleted | DEFINITION | Interacting selectively and non-covalently with a DNA region that controls the transcription of the mitochondrial DNA. |
2020-04-29 | Added | RELATION | is a GO:0000976 (transcription cis-regulatory region binding) |
2020-04-29 | Deleted | RELATION | is a GO:0044212 (transcription regulatory region DNA binding) |
2018-03-21 | Deleted | RELATION | has part GO:0001142 (mitochondrial RNA polymerase transcription factor activity, sequence-specific DNA binding) |
2017-11-08 | Deleted | RELATION | has part GO:0001143 (transcription factor activity, mitochondrial RNA polymerase core promoter sequence-specific DNA binding) |
2017-11-08 | Deleted | RELATION | has part GO:0001144 (transcription factor activity, mitochondrial proximal promoter sequence-specific binding) |
2017-11-04 | Added | SYNONYM | mitochondrial heavy strand promoter sense binding |
2017-11-04 | Added | SYNONYM | mitochondrial RNA polymerase core promoter sequence-specific DNA binding |
2017-11-04 | Added | SYNONYM | mitochondrial RNA polymerase regulatory region sequence-specific DNA binding |
Timestamp | Action | Category | Detail |
---|---|---|---|
2017-11-04 | Updated | TERM | mitochondrial promoter sequence-specific DNA binding |
2010-09-03 | Added | TERM | mitochondrial RNA polymerase regulatory region DNA binding |
Timestamp | Action | Category | Detail |
---|---|---|---|
2021-05-24 | Added | DEFINITION | Binding to a DNA region that controls the transcription of the mitochondrial DNA. |
2021-05-24 | Deleted | DEFINITION | Interacting selectively and non-covalently with a DNA region that controls the transcription of the mitochondrial DNA. |
2017-11-04 | Added | SYNONYM | mitochondrial heavy strand promoter sense binding |
2017-11-04 | Added | SYNONYM | mitochondrial RNA polymerase core promoter sequence-specific DNA binding |
2017-11-04 | Added | SYNONYM | mitochondrial RNA polymerase regulatory region sequence-specific DNA binding |
2017-11-04 | Added | SYNONYM | LSP coding strand binding |
2017-11-04 | Added | SYNONYM | HSPs binding |
2017-11-04 | Added | SYNONYM | mitochondrial proximal promoter sequence-specific DNA binding |
2017-11-04 | Added | SYNONYM | LSPas binding |
2017-11-04 | Added | SYNONYM | mitochondrial RNA polymerase core promoter proximal region sequence-specific DNA binding |
2017-11-04 | Deleted | DEFINITION | Interacting selectively and non-covalently with a DNA region that controls the transcription of a region of DNA by mitochondrial RNA polymerase. Binding may occur as a high affinity and sequence specific interaction or as a lower affinity interaction observed once a factor has been recruited to the DNA by other factors. |
2017-11-04 | Added | DEFINITION | Interacting selectively and non-covalently with a DNA region that controls the transcription of the mitochondrial DNA. |
2017-11-04 | Added | SYNONYM | LSPs binding |
2017-11-04 | Added | SYNONYM | LSP non-coding strand binding |
2017-11-04 | Added | SYNONYM | HSPas binding |
2017-11-04 | Added | SYNONYM | mitochondrial light strand promoter anti-sense binding |
2017-11-04 | Added | SYNONYM | HSP non-coding strand binding |
2017-11-04 | Added | SYNONYM | HSP coding strand binding |
2017-11-04 | Added | SYNONYM | mitochondrial RNA polymerase regulatory region DNA binding |
2017-11-04 | Added | SYNONYM | mitochondrial light strand promoter sense binding |
2017-11-04 | Added | SYNONYM | mitochondrial heavy strand promoter anti-sense binding |
2012-10-29 | Deleted | DEFINITION | Interacting selectively with a DNA region that controls the transcription of a region of DNA by mitochondrial RNA polymerase. Binding may occur as a high affinity and sequence specific interaction or as a lower affinity interaction observed once a factor has been recruited to the DNA by other factors. |
2012-10-29 | Added | DEFINITION | Interacting selectively and non-covalently with a DNA region that controls the transcription of a region of DNA by mitochondrial RNA polymerase. Binding may occur as a high affinity and sequence specific interaction or as a lower affinity interaction observed once a factor has been recruited to the DNA by other factors. |
2010-09-03 | Added | DEFINITION | Interacting selectively with a DNA region that controls the transcription of a region of DNA by mitochondrial RNA polymerase. Binding may occur as a high affinity and sequence specific interaction or as a lower affinity interaction observed once a factor has been recruited to the DNA by other factors. |
Timestamp | Action | Category | Detail |
---|---|---|---|
2020-04-29 | Added | RELATION | is a GO:0000976 (transcription cis-regulatory region binding) |
2020-04-29 | Deleted | RELATION | is a GO:0044212 (transcription regulatory region DNA binding) |
2018-03-21 | Deleted | RELATION | has part GO:0001142 (mitochondrial RNA polymerase transcription factor activity, sequence-specific DNA binding) |
2017-11-08 | Deleted | RELATION | has part GO:0001143 (transcription factor activity, mitochondrial RNA polymerase core promoter sequence-specific DNA binding) |
2017-11-08 | Deleted | RELATION | has part GO:0001144 (transcription factor activity, mitochondrial proximal promoter sequence-specific binding) |
2017-11-04 | Added | RELATION | has part GO:0001142 (mitochondrial RNA polymerase transcription factor activity, sequence-specific DNA binding) |
2017-11-04 | Added | RELATION | has part GO:0034246 (mitochondrial transcription factor activity) |
2017-11-04 | Added | RELATION | has part GO:0001143 (transcription factor activity, mitochondrial RNA polymerase core promoter sequence-specific DNA binding) |
2017-11-04 | Added | RELATION | has part GO:0001144 (transcription factor activity, mitochondrial proximal promoter sequence-specific binding) |
2010-09-03 | Added | RELATION | is a GO:0044212 (transcription regulatory region DNA binding) |
Timestamp | Action | Category | Detail |
---|
Timestamp | Action | Category | Detail |
---|---|---|---|
2017-11-04 | Added | SECONDARY | GO:0000997 (mitochondrial RNA polymerase core promoter sequence-specific DNA binding) |
2017-11-04 | Added | SECONDARY | GO:0001044 (mitochondrial RNA polymerase regulatory region sequence-specific DNA binding) |
2017-11-04 | Added | SECONDARY | GO:0001045 (mitochondrial proximal promoter sequence-specific DNA binding) |
2017-11-04 | Added | SECONDARY | GO:0070361 (mitochondrial light strand promoter anti-sense binding) |
2017-11-04 | Added | SECONDARY | GO:0070362 (mitochondrial heavy strand promoter anti-sense binding) |
2017-11-04 | Added | SECONDARY | GO:0070363 (mitochondrial light strand promoter sense binding) |
2017-11-04 | Added | SECONDARY | GO:0070364 (mitochondrial heavy strand promoter sense binding) |
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