GO:0001917
JSON
photoreceptor inner segment
Cellular Component
Definition (GO:0001917 GONUTS page)
The inner segment of a vertebrate photoreceptor containing mitochondria, ribosomes and membranes where opsin molecules are assembled and passed to be part of the outer segment discs. PMID:12019563
Ancestor Chart
Child Terms
This table lists all terms that are direct descendants (child terms) of GO:0001917
Child Term | Relationship to GO:0001917 |
---|---|
photoreceptor inner segment membrane
|
part_of |
Taxon Constraints
The use of this term should conform to the following taxon constraints:
Ancestor GO ID | Ancestor GO Term Name | Relationship | Taxon ID | Taxon | Reference(s) |
---|---|---|---|---|---|
GO:0001917 | photoreceptor inner segment | Only in Taxon | 6072 | Eumetazoa |
More information on taxon constraints in GO is available here
Annotation Blacklist
This list aims to correct incorrect annotations to UniProtKB accessions inferred from electronic annotation (IEA) methods that are supplied by the UniProt-GOA project to the GO Consortium:
Category | Entity Type | Entity ID | Taxon ID | Entity Name | Ancestor GO ID | Reason | Rule/Method ID |
---|---|---|---|---|---|---|---|
NOT-qualified manual | protein | A0A8I5ZWB0 | 10116 | A0A8I5ZWB0_RAT | GO:0001917 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | A0A8J8XYU9 | 10116 | A0A8J8XYU9_RAT | GO:0001917 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | A6I6C4 | 10116 | A6I6C4_RAT | GO:0001917 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | A6I6C5 | 10116 | A6I6C5_RAT | GO:0001917 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | P97479 | 10090 | MYO7A_MOUSE | GO:0001917 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000314 from this reference: PMID:8842737 | |
NOT-qualified manual | protein | Q8CJE3 | 10116 | Q8CJE3_RAT | GO:0001917 | 2 NOT-qualified manual annotations exist with these evidence codes: ECO:0000266, ECO:0000314 from these references: GO_REF:0000096, PMID:8842737 |
Cross-references
Database | ID | Description |
---|---|---|
UniProtKB-SubCell | SL-0457 | Photoreceptor inner segment |
Cross-Ontology Relations
Relation | Other Ontology | ID | Term |
---|---|---|---|
part_of | CL | CL:0000210 | photoreceptor cell |
Co-occurring Terms
These tables show the number of times the term listed in the table has been co-annotated.
No co-occurrence statistics for GO:0001917 based on ALL annotations
The top 100 of 1,304 co-occurring terms
Co-occurring Term | PR | S% | #Together | #Compared |
---|---|---|---|---|
photoreceptor inner segment
|
9,824.55 | 100.00 | 19,842 | 19,842 |
photoreceptor outer segment
|
3,209.89 | 22.68 | 8,449 | 25,860 |
stereocilium tip
|
5,327.26 | 19.17 | 4,538 | 8,369 |
interphotoreceptor matrix
|
6,915.75 | 10.79 | 2,242 | 3,185 |
cone photoreceptor outer segment
|
8,407.55 | 10.57 | 2,136 | 2,496 |
stereocilia ankle link complex
|
4,786.69 | 10.51 | 2,344 | 4,811 |
regulation of actin filament length
|
4,675.94 | 9.91 | 2,206 | 4,635 |
calcium sensitive guanylate cyclase activator activity
|
4,681.84 | 8.75 | 1,920 | 4,029 |
sensory perception of sound
|
1,178.94 | 8.73 | 4,811 | 40,092 |
filopodium tip
|
2,802.30 | 8.70 | 2,206 | 7,734 |
Totals | 128039 | 2969935 |
No co-occurrence statistics for GO:0001917 based on MANUAL annotations
The top 100 of 990 co-occurring terms
Co-occurring Term | PR | S% | #Together | #Compared |
---|---|---|---|---|
photoreceptor inner segment
|
3,364.06 | 100.00 | 384 | 384 |
photoreceptor outer segment
|
881.55 | 19.91 | 174 | 664 |
stereocilium tip
|
1,109.23 | 12.01 | 61 | 185 |
cone photoreceptor outer segment
|
2,293.68 | 11.11 | 45 | 66 |
photoreceptor cell maintenance
|
668.93 | 10.42 | 69 | 347 |
calcium sensitive guanylate cyclase activator activity
|
1,431.51 | 9.13 | 40 | 94 |
regulation of actin filament length
|
1,707.91 | 7.93 | 33 | 65 |
visual perception
|
334.85 | 7.40 | 86 | 864 |
retinal cone cell development
|
1,065.84 | 7.06 | 32 | 101 |
detection of light stimulus involved in visual perception
|
828.83 | 6.97 | 34 | 138 |
Totals | 2475 | 25100 |
GO Slims
This term is present in the following GO Consortium-maintained GO slims:
GO slim name | Total Number of Terms in Slim |
---|---|
goslim_pir | 439 |
Change Log
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Timestamp | Action | Category | Detail |
---|---|---|---|
2024-03-05 | Added | CONSTRAINT | in_taxon NCBITaxon:6072 (Eumetazoa) |
2019-09-12 | Added | RELATION | is a GO:0110165 (cellular anatomical structure) |
2019-09-12 | Deleted | RELATION | is a GO:0097458 (obsolete neuron part) |
2013-06-27 | Added | RELATION | is a GO:0097458 (obsolete neuron part) |
2013-06-27 | Deleted | RELATION | is a GO:0044464 (obsolete cell part) |
2013-04-18 | Updated | SUBSET | goslim_pir |
2008-06-09 | Added | SUBSET | goslim_pir |
2008-05-13 | Added | DEFINITION | The inner segment of a vertebrate photoreceptor containing mitochondria, ribosomes and membranes where opsin molecules are assembled and passed to be part of the outer segment discs. |
2008-05-12 | Deleted | DEFINITION | The inner segment of a vertebrate photoreceptor containing mitochondria, ribosomes and membranes where opsin molecules are assembled and passed to be part of the outer segment discs. |
2008-04-01 | Updated | RELATION | is a GO:0044464 (obsolete cell part) |
Timestamp | Action | Category | Detail |
---|---|---|---|
2004-10-29 | Added | TERM | photoreceptor inner segment |
Timestamp | Action | Category | Detail |
---|---|---|---|
2008-05-13 | Added | DEFINITION | The inner segment of a vertebrate photoreceptor containing mitochondria, ribosomes and membranes where opsin molecules are assembled and passed to be part of the outer segment discs. |
2008-05-12 | Deleted | DEFINITION | The inner segment of a vertebrate photoreceptor containing mitochondria, ribosomes and membranes where opsin molecules are assembled and passed to be part of the outer segment discs. |
2004-10-29 | Added | DEFINITION | The inner segment of a vertebrate photoreceptor containing mitochondria, ribosomes and membranes where opsin molecules are assembled and passed to be part of the outer segment discs. |
Timestamp | Action | Category | Detail |
---|---|---|---|
2019-09-12 | Added | RELATION | is a GO:0110165 (cellular anatomical structure) |
2019-09-12 | Deleted | RELATION | is a GO:0097458 (obsolete neuron part) |
2013-06-27 | Added | RELATION | is a GO:0097458 (obsolete neuron part) |
2013-06-27 | Deleted | RELATION | is a GO:0044464 (obsolete cell part) |
2008-04-01 | Updated | RELATION | is a GO:0044464 (obsolete cell part) |
Timestamp | Action | Category | Detail |
---|
Timestamp | Action | Category | Detail |
---|---|---|---|
2024-03-05 | Added | CONSTRAINT | in_taxon NCBITaxon:6072 (Eumetazoa) |
2013-04-18 | Updated | SUBSET | goslim_pir |
2008-06-09 | Added | SUBSET | goslim_pir |
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