GO:0002098
JSON
tRNA wobble uridine modification
Biological Process
Definition (GO:0002098 GONUTS page)
The process in which a uridine in position 34 of a tRNA is post-transcriptionally modified.
Ancestor Chart
Ancestor chart for GO:0002098
Child Terms
This table lists all terms that are direct descendants (child terms) of GO:0002098
Child Term | Relationship to GO:0002098 |
---|---|
tRNA wobble base 5-methoxycarbonylmethyl-2-thiouridinylation
|
is_a |
mitochondrial tRNA wobble uridine modification
|
is_a |
tRNA wobble position uridine thiolation
|
is_a |
Annotation Blacklist
This list aims to correct incorrect annotations to UniProtKB accessions inferred from electronic annotation (IEA) methods that are supplied by the UniProt-GOA project to the GO Consortium:
Category | Entity Type | Entity ID | Taxon ID | Entity Name | Ancestor GO ID | Reason | Rule/Method ID |
---|---|---|---|---|---|---|---|
NOT-qualified manual | protein | F4IL30 | 3702 | POP1_ARATH | GO:0008033 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000315 from this reference: PMID:22549728 | |
NOT-qualified manual | protein | O14133 | 284812 | ATE1_SCHPO | GO:0006399 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000303 from this reference: GO_REF:0000051 | |
NOT-qualified manual | protein | Q9SB36 | 3702 | PP337_ARATH | GO:0009451 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000315 from this reference: PMID:21288264 | |
NOT-qualified manual | protein | Q9ZW76 | 3702 | POP4_ARATH | GO:0008033 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000315 from this reference: PMID:22549728 |
Cross-references
Database | ID | Description |
---|---|---|
InterPro | IPR000541 | Cytoplasmic tRNA 2-thiolation protein 1 |
InterPro | IPR004416 | tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG |
InterPro | IPR005271 | Carboxy-S-adenosyl-L-methionine synthase |
InterPro | IPR006849 | Elongator complex protein 1 |
InterPro | IPR008728 | Elongator complex protein 4 |
InterPro | IPR010017 | tRNA U34 carboxymethyltransferase |
InterPro | IPR017582 | tRNA 2-selenouridine synthase |
InterPro | IPR018627 | Elongator complex protein 6 |
InterPro | IPR019407 | Cytoplasmic tRNA 2-thiolation protein 2 |
InterPro | IPR019519 | Elongator complex protein 5 |
Co-occurring Terms
These tables show the number of times the term listed in the table has been co-annotated.
No co-occurrence statistics for GO:0002098 based on ALL annotations
The top 100 of 1,146 co-occurring terms
Co-occurring Term | PR | S% | #Together | #Compared |
---|---|---|---|---|
tRNA wobble uridine modification
|
1,103.95 | 100.00 | 176,583 | 176,583 |
tRNA methylation
|
382.60 | 28.79 | 111,212 | 320,887 |
elongator holoenzyme complex
|
821.22 | 11.56 | 21,253 | 28,570 |
tRNA thio-modification
|
435.75 | 8.00 | 16,106 | 40,804 |
tRNA processing
|
78.12 | 6.87 | 123,711 | 1,748,269 |
tRNA (uracil(54)-C5)-methyltransferase activity, 5,10-methylenetetrahydrofolate-dependent
|
1,099.67 | 6.84 | 12,088 | 12,135 |
protein urmylation
|
1,011.95 | 6.17 | 10,955 | 11,951 |
tRNA modification
|
80.60 | 6.09 | 47,485 | 650,376 |
tRNA 2-selenouridine synthase activity
|
1,103.95 | 5.68 | 10,036 | 10,036 |
tRNA wobble position uridine thiolation
|
166.54 | 5.25 | 13,161 | 87,241 |
Totals | 1229011 | 121757257 |
No co-occurrence statistics for GO:0002098 based on MANUAL annotations
The top 100 of 218 co-occurring terms
Co-occurring Term | PR | S% | #Together | #Compared |
---|---|---|---|---|
tRNA wobble uridine modification
|
1,724.70 | 100.00 | 749 | 749 |
tRNA (5-carboxymethyluridine(34)-5-O)-methyltransferase activity
|
1,724.70 | 18.69 | 140 | 140 |
tRNA methylation
|
364.69 | 17.61 | 384 | 1,816 |
tRNA thio-modification
|
1,426.44 | 14.25 | 110 | 133 |
elongator holoenzyme complex
|
387.98 | 10.27 | 119 | 529 |
tRNA binding
|
141.16 | 6.66 | 197 | 2,407 |
transcription elongation factor complex
|
218.89 | 6.62 | 91 | 717 |
tRNA wobble position uridine thiolation
|
184.63 | 3.76 | 41 | 383 |
sulfurtransferase activity
|
335.01 | 3.14 | 27 | 139 |
phosphorylase kinase regulator activity
|
958.17 | 2.61 | 20 | 36 |
Totals | 3065 | 351971 |
Change Log
- All changes
- All changes
- Term
- Term
- Definition / Synonyms
- Definition / Synonyms
- Relationships
- Relationships
- Cross-references
- Cross-references
- Other
- Other
Timestamp | Action | Category | Detail |
---|---|---|---|
2010-12-17 | Deleted | DEFINITION | The process whereby a uridine in position 34 of a tRNA is post-transcriptionally modified. |
2010-12-17 | Added | DEFINITION | The process in which a uridine in position 34 of a tRNA is post-transcriptionally modified. |
2008-05-13 | Added | DEFINITION | The process whereby a uridine in position 34 of a tRNA is post-transcriptionally modified. |
2008-05-12 | Deleted | DEFINITION | The process whereby a uridine in position 34 of a tRNA is post-transcriptionally modified. |
2008-04-01 | Updated | RELATION | is a GO:0002097 (tRNA wobble base modification) |
2007-01-23 | Added | DEFINITION | The process whereby a uridine in position 34 of a tRNA is post-transcriptionally modified. |
2007-01-22 | Added | TERM | tRNA wobble uridine modification |
Timestamp | Action | Category | Detail |
---|---|---|---|
2007-01-22 | Added | TERM | tRNA wobble uridine modification |
Timestamp | Action | Category | Detail |
---|---|---|---|
2010-12-17 | Deleted | DEFINITION | The process whereby a uridine in position 34 of a tRNA is post-transcriptionally modified. |
2010-12-17 | Added | DEFINITION | The process in which a uridine in position 34 of a tRNA is post-transcriptionally modified. |
2008-05-13 | Added | DEFINITION | The process whereby a uridine in position 34 of a tRNA is post-transcriptionally modified. |
2008-05-12 | Deleted | DEFINITION | The process whereby a uridine in position 34 of a tRNA is post-transcriptionally modified. |
2007-01-23 | Added | DEFINITION | The process whereby a uridine in position 34 of a tRNA is post-transcriptionally modified. |
Timestamp | Action | Category | Detail |
---|---|---|---|
2008-04-01 | Updated | RELATION | is a GO:0002097 (tRNA wobble base modification) |
Timestamp | Action | Category | Detail |
---|
Timestamp | Action | Category | Detail |
---|
Please Wait...
Not found :(
Sorry, but the Term you were trying to view does not exist.
Reported error:
It looks like this may have been caused by:
- a mistyped URL
- an out-of-date link