GO:0002098
JSON
tRNA wobble uridine modification
Biological Process
Definition (GO:0002098 GONUTS page)
The process in which a uridine in position 34 of a tRNA is post-transcriptionally modified.
Ancestor Chart
Ancestor chart for GO:0002098
Child Terms
This table lists all terms that are direct descendants (child terms) of GO:0002098
Child Term | Relationship to GO:0002098 |
---|---|
tRNA wobble position uridine thiolation
|
is_a |
tRNA wobble base 5-methoxycarbonylmethyl-2-thiouridinylation
|
is_a |
mitochondrial tRNA wobble uridine modification
|
is_a |
Annotation Blacklist
This list aims to correct incorrect annotations to UniProtKB accessions inferred from electronic annotation (IEA) methods that are supplied by the UniProt-GOA project to the GO Consortium:
Category | Entity Type | Entity ID | Taxon ID | Entity Name | Ancestor GO ID | Reason | Rule/Method ID |
---|---|---|---|---|---|---|---|
NOT-qualified manual | protein | F4IL30 | 3702 | POP1_ARATH | GO:0008033 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000315 from this reference: PMID:22549728 | |
NOT-qualified manual | protein | O14133 | 284812 | ATE1_SCHPO | GO:0006399 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000303 from this reference: GO_REF:0000051 | |
NOT-qualified manual | protein | Q9SB36 | 3702 | PP337_ARATH | GO:0009451 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000315 from this reference: PMID:21288264 | |
NOT-qualified manual | protein | Q9ZW76 | 3702 | POP4_ARATH | GO:0008033 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000315 from this reference: PMID:22549728 |
Cross-references
Database | ID | Description |
---|---|---|
InterPro | IPR000541 | Cytoplasmic tRNA 2-thiolation protein 1 |
InterPro | IPR004416 | tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG |
InterPro | IPR005271 | Carboxy-S-adenosyl-L-methionine synthase |
InterPro | IPR006849 | Elongator complex protein 1 |
InterPro | IPR008728 | Elongator complex protein 4 |
InterPro | IPR010017 | tRNA U34 carboxymethyltransferase |
InterPro | IPR017582 | tRNA 2-selenouridine synthase |
InterPro | IPR018627 | Elongator complex protein 6 |
InterPro | IPR019407 | Cytoplasmic tRNA 2-thiolation protein 2 |
InterPro | IPR019519 | Elongator complex protein 5 |
Co-occurring Terms
These tables show the number of times the term listed in the table has been co-annotated.
No co-occurrence statistics for GO:0002098 based on ALL annotations
The top 100 of 1,092 co-occurring terms
Co-occurring Term | PR | S% | #Together | #Compared |
---|---|---|---|---|
|
1,104.27 | 100.00 | 179,445 | 179,445 |
|
381.04 | 28.65 | 112,688 | 326,575 |
|
821.69 | 11.67 | 21,824 | 29,329 |
|
438.46 | 8.09 | 16,545 | 41,669 |
|
78.13 | 6.87 | 125,791 | 1,777,988 |
|
1,100.29 | 6.79 | 12,191 | 12,235 |
|
1,011.31 | 6.23 | 11,239 | 12,272 |
|
80.99 | 6.12 | 48,342 | 659,163 |
|
1,104.27 | 5.66 | 10,152 | 10,152 |
|
168.16 | 5.31 | 13,518 | 88,767 |
Totals | 1251681 | 120842899 |
No co-occurrence statistics for GO:0002098 based on MANUAL annotations
The top 100 of 205 co-occurring terms
Co-occurring Term | PR | S% | #Together | #Compared |
---|---|---|---|---|
|
1,762.21 | 100.00 | 801 | 801 |
|
1,762.21 | 18.98 | 152 | 152 |
|
371.91 | 17.49 | 405 | 1,919 |
|
1,457.47 | 13.35 | 110 | 133 |
|
420.87 | 11.17 | 139 | 582 |
|
244.44 | 7.41 | 110 | 793 |
|
142.79 | 6.61 | 211 | 2,604 |
|
195.80 | 3.88 | 45 | 405 |
|
342.98 | 3.15 | 29 | 149 |
|
1,125.86 | 2.83 | 23 | 36 |
Totals | 3261 | 380029 |
Change Log
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- Term
- Definition / Synonyms
- Definition / Synonyms
- Relationships
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- Cross-references
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Timestamp | Action | Category | Detail |
---|---|---|---|
2010-12-17 | Added | DEFINITION | The process in which a uridine in position 34 of a tRNA is post-transcriptionally modified. |
2010-12-17 | Deleted | DEFINITION | The process whereby a uridine in position 34 of a tRNA is post-transcriptionally modified. |
2008-05-13 | Added | DEFINITION | The process whereby a uridine in position 34 of a tRNA is post-transcriptionally modified. |
2008-05-12 | Deleted | DEFINITION | The process whereby a uridine in position 34 of a tRNA is post-transcriptionally modified. |
2008-04-01 | Updated | RELATION | is a GO:0002097 (tRNA wobble base modification) |
2007-01-23 | Added | DEFINITION | The process whereby a uridine in position 34 of a tRNA is post-transcriptionally modified. |
2007-01-22 | Added | TERM | tRNA wobble uridine modification |
Timestamp | Action | Category | Detail |
---|---|---|---|
2007-01-22 | Added | TERM | tRNA wobble uridine modification |
Timestamp | Action | Category | Detail |
---|---|---|---|
2010-12-17 | Added | DEFINITION | The process in which a uridine in position 34 of a tRNA is post-transcriptionally modified. |
2010-12-17 | Deleted | DEFINITION | The process whereby a uridine in position 34 of a tRNA is post-transcriptionally modified. |
2008-05-13 | Added | DEFINITION | The process whereby a uridine in position 34 of a tRNA is post-transcriptionally modified. |
2008-05-12 | Deleted | DEFINITION | The process whereby a uridine in position 34 of a tRNA is post-transcriptionally modified. |
2007-01-23 | Added | DEFINITION | The process whereby a uridine in position 34 of a tRNA is post-transcriptionally modified. |
Timestamp | Action | Category | Detail |
---|---|---|---|
2008-04-01 | Updated | RELATION | is a GO:0002097 (tRNA wobble base modification) |
Timestamp | Action | Category | Detail |
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Timestamp | Action | Category | Detail |
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