This term is obsolete.

GO:0002098 JSON

tRNA wobble uridine modification

Biological Process

Definition (GO:0002098 GONUTS page)

The process in which a uridine in position 34 of a tRNA is post-transcriptionally modified.

284,042 annotations

Ancestor Chart

Ancestor chart for GO:0002098
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Ancestor chart

Child Terms

This table lists all terms that are direct descendants (child terms) of GO:0002098

Child Term Relationship to
GO:0002098
tRNA wobble base 5-methoxycarbonylmethyl-2-thiouridinylation
is_a
mitochondrial tRNA wobble uridine modification
is_a
tRNA wobble position uridine thiolation
is_a

Annotation Blacklist

This list aims to correct incorrect annotations to UniProtKB accessions inferred from electronic annotation (IEA) methods that are supplied by the UniProt-GOA project to the GO Consortium:

Category Entity Type Entity ID Taxon ID Entity Name Ancestor GO ID Reason Rule/Method ID
NOT-qualified manual protein F4IL30 3702 POP1_ARATH GO:0008033 1 NOT-qualified manual annotation exists with evidence code ECO:0000315 from this reference: PMID:22549728
NOT-qualified manual protein O14133 284812 ATE1_SCHPO GO:0006399 1 NOT-qualified manual annotation exists with evidence code ECO:0000303 from this reference: GO_REF:0000051
NOT-qualified manual protein Q9SB36 3702 PP337_ARATH GO:0009451 1 NOT-qualified manual annotation exists with evidence code ECO:0000315 from this reference: PMID:21288264
NOT-qualified manual protein Q9ZW76 3702 POP4_ARATH GO:0008033 1 NOT-qualified manual annotation exists with evidence code ECO:0000315 from this reference: PMID:22549728

Cross-references

Database ID Description
InterPro IPR000541 Cytoplasmic tRNA 2-thiolation protein 1
InterPro IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG
InterPro IPR005271 Carboxy-S-adenosyl-L-methionine synthase
InterPro IPR006849 Elongator complex protein 1
InterPro IPR008728 Elongator complex protein 4
InterPro IPR010017 tRNA U34 carboxymethyltransferase
InterPro IPR017582 tRNA 2-selenouridine synthase
InterPro IPR018627 Elongator complex protein 6
InterPro IPR019407 Cytoplasmic tRNA 2-thiolation protein 2
InterPro IPR019519 Elongator complex protein 5

Co-occurring Terms

These tables show the number of times the term listed in the table has been co-annotated.

No co-occurrence statistics for GO:0002098 based on ALL annotations
The top 100 of 1,146 co-occurring terms
Co-occurring Term PR S% #Together #Compared
tRNA wobble uridine modification
1,103.95 100.00 176,583 176,583
tRNA methylation
382.60 28.79 111,212 320,887
elongator holoenzyme complex
821.22 11.56 21,253 28,570
tRNA thio-modification
435.75 8.00 16,106 40,804
tRNA processing
78.12 6.87 123,711 1,748,269
tRNA (uracil(54)-C5)-methyltransferase activity, 5,10-methylenetetrahydrofolate-dependent
1,099.67 6.84 12,088 12,135
protein urmylation
1,011.95 6.17 10,955 11,951
tRNA modification
80.60 6.09 47,485 650,376
tRNA 2-selenouridine synthase activity
1,103.95 5.68 10,036 10,036
tRNA wobble position uridine thiolation
166.54 5.25 13,161 87,241
Totals 1229011 121757257
No co-occurrence statistics for GO:0002098 based on MANUAL annotations
The top 100 of 218 co-occurring terms
Co-occurring Term PR S% #Together #Compared
tRNA wobble uridine modification
1,724.70 100.00 749 749
tRNA (5-carboxymethyluridine(34)-5-O)-methyltransferase activity
1,724.70 18.69 140 140
tRNA methylation
364.69 17.61 384 1,816
tRNA thio-modification
1,426.44 14.25 110 133
elongator holoenzyme complex
387.98 10.27 119 529
tRNA binding
141.16 6.66 197 2,407
transcription elongation factor complex
218.89 6.62 91 717
tRNA wobble position uridine thiolation
184.63 3.76 41 383
sulfurtransferase activity
335.01 3.14 27 139
phosphorylase kinase regulator activity
958.17 2.61 20 36
Totals 3065 351971

Change Log

Timestamp Action Category Detail
2010-12-17 Deleted DEFINITION The process whereby a uridine in position 34 of a tRNA is post-transcriptionally modified.
2010-12-17 Added DEFINITION The process in which a uridine in position 34 of a tRNA is post-transcriptionally modified.
2008-05-13 Added DEFINITION The process whereby a uridine in position 34 of a tRNA is post-transcriptionally modified.
2008-05-12 Deleted DEFINITION The process whereby a uridine in position 34 of a tRNA is post-transcriptionally modified.
2008-04-01 Updated RELATION is a GO:0002097 (tRNA wobble base modification)
2007-01-23 Added DEFINITION The process whereby a uridine in position 34 of a tRNA is post-transcriptionally modified.
2007-01-22 Added TERM tRNA wobble uridine modification
Timestamp Action Category Detail
2007-01-22 Added TERM tRNA wobble uridine modification
Timestamp Action Category Detail
2010-12-17 Deleted DEFINITION The process whereby a uridine in position 34 of a tRNA is post-transcriptionally modified.
2010-12-17 Added DEFINITION The process in which a uridine in position 34 of a tRNA is post-transcriptionally modified.
2008-05-13 Added DEFINITION The process whereby a uridine in position 34 of a tRNA is post-transcriptionally modified.
2008-05-12 Deleted DEFINITION The process whereby a uridine in position 34 of a tRNA is post-transcriptionally modified.
2007-01-23 Added DEFINITION The process whereby a uridine in position 34 of a tRNA is post-transcriptionally modified.
Timestamp Action Category Detail
2008-04-01 Updated RELATION is a GO:0002097 (tRNA wobble base modification)
Timestamp Action Category Detail
Timestamp Action Category Detail
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