This term is obsolete.

GO:0003680 JSON

minor groove of adenine-thymine-rich DNA binding

Molecular Function

Definition (GO:0003680 GONUTS page)

Binding to a DNA structure formed by the minor groove of adenine-thymine-rich DNA regions. Examples of proteins having this function are AT-rich interaction domain (ARID)-containing proteins. PMID:10545119 PMID:15802641 PMID:26223912 PMID:2670564

21,142 annotations

Synonyms

Synonyms are alternative words or phrases closely related in meaning to the term name, with indication of the relationship between the name and synonym given by the synonym scope.

Synonym Type
AT-rich DNA binding exact
AT binding exact
AT DNA binding exact

Ancestor Chart

Ancestor chart for GO:0003680
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Ancestor chart

Annotation Guidance

Usage of this term is subject to the following annotation guidelines:

Binding term considerations Link
Considerations when annotating from ChiP assay results Link

Annotation Blacklist

This list aims to correct incorrect annotations to UniProtKB accessions inferred from electronic annotation (IEA) methods that are supplied by the UniProt-GOA project to the GO Consortium:

Category Entity Type Entity ID Taxon ID Entity Name Ancestor GO ID Reason Rule/Method ID
IEA Review protein P40999 284812 PMT1M_SCHPO GO:0003677 To remove over-annotation from InterPro entries IPR001525 and IPR018117; for this particular C5-methyltransferase family member, there is a Ser residue in the active site that may be responsible. Reported by InterPro on 19-10-2012
NOT-qualified manual protein A0A0G2K0G0 10116 A0A0G2K0G0_RAT GO:0003677 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096
NOT-qualified manual protein A0A1B0GWQ8 10116 A0A1B0GWQ8_RAT GO:0003677 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096
NOT-qualified manual protein A0A8I5Y5Z6 10116 A0A8I5Y5Z6_RAT GO:0003677 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096
NOT-qualified manual protein A0A8I5ZKC5 10116 A0A8I5ZKC5_RAT GO:0003677 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096
NOT-qualified manual protein A0A8I6A2T0 10116 A0A8I6A2T0_RAT GO:0003677 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096
NOT-qualified manual protein A0A8I6A7B9 10116 A0A8I6A7B9_RAT GO:0003677 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096
NOT-qualified manual protein A0A8I6AB42 10116 A0A8I6AB42_RAT GO:0003677 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096
NOT-qualified manual protein A0A8I6ASJ7 10116 A0A8I6ASJ7_RAT GO:0003677 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096
NOT-qualified manual protein A0A8I6AUW9 10116 A0A8I6AUW9_RAT GO:0003677 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096

Cross-references

Database ID Description
InterPro IPR014476 AT-hook motif nuclear-localized protein 15-29
InterPro IPR039605 AT-hook motif nuclear-localized protein

Replaces

This term can be used instead of these obsolete terms:

GO Identifier GO Term Name Reason
GO:0006328 obsolete AT binding replaced_by GO:0003680

Co-occurring Terms

These tables show the number of times the term listed in the table has been co-annotated.

No co-occurrence statistics for GO:0003680 based on ALL annotations
The top 100 of 697 co-occurring terms
Co-occurring Term PR S% #Together #Compared
minor groove of adenine-thymine-rich DNA binding
9,496.70 100.00 20,527 20,527
DNA-binding transcription repressor activity
6,681.81 31.67 7,501 10,661
bent DNA binding
6,462.96 31.19 7,501 11,022
vegetative to reproductive phase transition of meristem
3,465.37 8.76 2,123 5,818
nucleoid
414.58 4.03 7,129 163,302
structural constituent of chromatin
150.32 1.48 3,923 247,845
protein-DNA complex
111.32 1.15 7,562 645,092
negative regulation of DNA-templated transcription
72.12 0.75 7,624 1,003,899
RNA polymerase II-specific DNA-binding transcription factor binding
100.24 0.56 238 22,547
senescence-associated heterochromatin focus
6,406.06 0.55 114 169
Totals 83524 5090389
No co-occurrence statistics for GO:0003680 based on MANUAL annotations
The top 100 of 573 co-occurring terms
Co-occurring Term PR S% #Together #Compared
minor groove of adenine-thymine-rich DNA binding
1,993.52 100.00 648 648
vegetative to reproductive phase transition of meristem
819.56 22.98 222 540
DNA-binding transcription factor activity
62.28 3.12 602 19,270
senescence-associated heterochromatin focus
1,107.51 2.27 15 27
oncogene-induced cell senescence
766.74 2.23 15 39
5'-deoxyribose-5-phosphate lyase activity
479.92 1.89 13 54
MH1 domain binding
1,993.52 1.85 12 12
mesodermal-endodermal cell signaling
1,840.17 1.85 12 13
MH2 domain binding
1,139.15 1.83 12 21
SMAD protein complex
629.53 1.78 12 38
Totals 2799 245635

Change Log

Timestamp Action Category Detail
2021-05-24 Deleted DEFINITION Interacting selectively and non-covalently with the structure formed by the minor groove of adenine-thymine-rich DNA regions. Examples of proteins having this function are AT-rich interaction domain (ARID)-containing proteins.
2021-05-24 Added DEFINITION Binding to a DNA structure formed by the minor groove of adenine-thymine-rich DNA regions. Examples of proteins having this function are AT-rich interaction domain (ARID)-containing proteins.
2020-07-05 Deleted DEFINITION Interacting selectively and non-covalently with oligo(A) and oligo(T) tracts of DNA (AT DNA).
2020-07-05 Added DEFINITION Interacting selectively and non-covalently with the structure formed by the minor groove of adenine-thymine-rich DNA regions. Examples of proteins having this function are AT-rich interaction domain (ARID)-containing proteins.
2020-07-05 Updated TERM minor groove of adenine-thymine-rich DNA binding
2020-07-05 Added SYNONYM AT-rich DNA binding
2020-07-05 Deleted RELATION is a GO:1990837 (sequence-specific double-stranded DNA binding)
2020-07-05 Added SYNONYM AT DNA binding
2020-07-05 Added RELATION is a GO:0000217 (DNA secondary structure binding)
2015-09-27 Added RELATION is a GO:1990837 (sequence-specific double-stranded DNA binding)
Timestamp Action Category Detail
2020-07-05 Updated TERM minor groove of adenine-thymine-rich DNA binding
2003-06-10 Updated TERM AT DNA binding
2003-03-19 Updated TERM AT DNA binding activity
2002-02-06 Updated TERM AT DNA binding
2001-04-03 Updated TERM AT DNA binding
2001-03-30 Added TERM AT DNA binding
Timestamp Action Category Detail
2021-05-24 Deleted DEFINITION Interacting selectively and non-covalently with the structure formed by the minor groove of adenine-thymine-rich DNA regions. Examples of proteins having this function are AT-rich interaction domain (ARID)-containing proteins.
2021-05-24 Added DEFINITION Binding to a DNA structure formed by the minor groove of adenine-thymine-rich DNA regions. Examples of proteins having this function are AT-rich interaction domain (ARID)-containing proteins.
2020-07-05 Deleted DEFINITION Interacting selectively and non-covalently with oligo(A) and oligo(T) tracts of DNA (AT DNA).
2020-07-05 Added DEFINITION Interacting selectively and non-covalently with the structure formed by the minor groove of adenine-thymine-rich DNA regions. Examples of proteins having this function are AT-rich interaction domain (ARID)-containing proteins.
2020-07-05 Added SYNONYM AT-rich DNA binding
2020-07-05 Added SYNONYM AT DNA binding
2009-07-03 Deleted DEFINITION Interacting selectively with oligo(A) and oligo(T) tracts of DNA (AT DNA).
2009-07-03 Added DEFINITION Interacting selectively and non-covalently with oligo(A) and oligo(T) tracts of DNA (AT DNA).
2008-05-13 Added DEFINITION Interacting selectively with oligo(A) and oligo(T) tracts of DNA (AT DNA).
2008-05-12 Deleted DEFINITION Interacting selectively with oligo(A) and oligo(T) tracts of DNA (AT DNA).
2007-08-09 Deleted SYNONYM AT binding
2007-08-09 Added SYNONYM AT binding
2005-08-10 Added SYNONYM AT binding
2003-05-28 Added DEFINITION Interacting selectively with oligo(A) and oligo(T) tracts of DNA (AT DNA).
Timestamp Action Category Detail
2020-07-05 Deleted RELATION is a GO:1990837 (sequence-specific double-stranded DNA binding)
2020-07-05 Added RELATION is a GO:0000217 (DNA secondary structure binding)
2015-09-27 Added RELATION is a GO:1990837 (sequence-specific double-stranded DNA binding)
2015-09-27 Deleted RELATION is a GO:0043565 (sequence-specific DNA binding)
2008-04-01 Updated RELATION is a GO:0043565 (sequence-specific DNA binding)
Timestamp Action Category Detail
Timestamp Action Category Detail
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