GO:0003680
JSON
minor groove of adenine-thymine-rich DNA binding
Molecular Function
Definition (GO:0003680 GONUTS page)
Binding to a DNA structure formed by the minor groove of adenine-thymine-rich DNA regions. Examples of proteins having this function are AT-rich interaction domain (ARID)-containing proteins. PMID:10545119 PMID:15802641 PMID:26223912 PMID:2670564
Synonyms
Synonyms are alternative words or phrases closely related in meaning to the term name, with indication of the relationship between the name and synonym given by the synonym scope.
Synonym | Type |
---|---|
AT-rich DNA binding | exact |
AT binding | exact |
AT DNA binding | exact |
Ancestor Chart
Annotation Guidance
Usage of this term is subject to the following annotation guidelines:
Binding term considerations | Link |
Considerations when annotating from ChiP assay results | Link |
Annotation Blacklist
This list aims to correct incorrect annotations to UniProtKB accessions inferred from electronic annotation (IEA) methods that are supplied by the UniProt-GOA project to the GO Consortium:
Category | Entity Type | Entity ID | Taxon ID | Entity Name | Ancestor GO ID | Reason | Rule/Method ID |
---|---|---|---|---|---|---|---|
IEA Review | protein | P40999 | 284812 | PMT1M_SCHPO | GO:0003677 | To remove over-annotation from InterPro entries IPR001525 and IPR018117; for this particular C5-methyltransferase family member, there is a Ser residue in the active site that may be responsible. Reported by InterPro on 19-10-2012 | |
NOT-qualified manual | protein | A0A0G2K0G0 | 10116 | A0A0G2K0G0_RAT | GO:0003677 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | A0A1B0GWQ8 | 10116 | A0A1B0GWQ8_RAT | GO:0003677 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | A0A8I5Y5Z6 | 10116 | A0A8I5Y5Z6_RAT | GO:0003677 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | A0A8I5ZKC5 | 10116 | A0A8I5ZKC5_RAT | GO:0003677 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | A0A8I6A2T0 | 10116 | A0A8I6A2T0_RAT | GO:0003677 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | A0A8I6A7B9 | 10116 | A0A8I6A7B9_RAT | GO:0003677 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | A0A8I6AB42 | 10116 | A0A8I6AB42_RAT | GO:0003677 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | A0A8I6ASJ7 | 10116 | A0A8I6ASJ7_RAT | GO:0003677 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | A0A8I6AUW9 | 10116 | A0A8I6AUW9_RAT | GO:0003677 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 |
Cross-references
Database | ID | Description |
---|---|---|
InterPro | IPR014476 | AT-hook motif nuclear-localized protein 15-29 |
InterPro | IPR039605 | AT-hook motif nuclear-localized protein |
Replaces
This term can be used instead of these obsolete terms:
GO Identifier | GO Term Name | Reason |
---|---|---|
GO:0006328 | obsolete AT binding | replaced_by GO:0003680 |
Co-occurring Terms
These tables show the number of times the term listed in the table has been co-annotated.
No co-occurrence statistics for GO:0003680 based on ALL annotations
The top 100 of 697 co-occurring terms
Co-occurring Term | PR | S% | #Together | #Compared |
---|---|---|---|---|
minor groove of adenine-thymine-rich DNA binding
|
9,496.70 | 100.00 | 20,527 | 20,527 |
DNA-binding transcription repressor activity
|
6,681.81 | 31.67 | 7,501 | 10,661 |
bent DNA binding
|
6,462.96 | 31.19 | 7,501 | 11,022 |
vegetative to reproductive phase transition of meristem
|
3,465.37 | 8.76 | 2,123 | 5,818 |
nucleoid
|
414.58 | 4.03 | 7,129 | 163,302 |
structural constituent of chromatin
|
150.32 | 1.48 | 3,923 | 247,845 |
protein-DNA complex
|
111.32 | 1.15 | 7,562 | 645,092 |
negative regulation of DNA-templated transcription
|
72.12 | 0.75 | 7,624 | 1,003,899 |
RNA polymerase II-specific DNA-binding transcription factor binding
|
100.24 | 0.56 | 238 | 22,547 |
senescence-associated heterochromatin focus
|
6,406.06 | 0.55 | 114 | 169 |
Totals | 83524 | 5090389 |
No co-occurrence statistics for GO:0003680 based on MANUAL annotations
The top 100 of 573 co-occurring terms
Co-occurring Term | PR | S% | #Together | #Compared |
---|---|---|---|---|
minor groove of adenine-thymine-rich DNA binding
|
1,993.52 | 100.00 | 648 | 648 |
vegetative to reproductive phase transition of meristem
|
819.56 | 22.98 | 222 | 540 |
DNA-binding transcription factor activity
|
62.28 | 3.12 | 602 | 19,270 |
senescence-associated heterochromatin focus
|
1,107.51 | 2.27 | 15 | 27 |
oncogene-induced cell senescence
|
766.74 | 2.23 | 15 | 39 |
5'-deoxyribose-5-phosphate lyase activity
|
479.92 | 1.89 | 13 | 54 |
MH1 domain binding
|
1,993.52 | 1.85 | 12 | 12 |
mesodermal-endodermal cell signaling
|
1,840.17 | 1.85 | 12 | 13 |
MH2 domain binding
|
1,139.15 | 1.83 | 12 | 21 |
SMAD protein complex
|
629.53 | 1.78 | 12 | 38 |
Totals | 2799 | 245635 |
Change Log
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- Definition / Synonyms
- Definition / Synonyms
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Timestamp | Action | Category | Detail |
---|---|---|---|
2021-05-24 | Deleted | DEFINITION | Interacting selectively and non-covalently with the structure formed by the minor groove of adenine-thymine-rich DNA regions. Examples of proteins having this function are AT-rich interaction domain (ARID)-containing proteins. |
2021-05-24 | Added | DEFINITION | Binding to a DNA structure formed by the minor groove of adenine-thymine-rich DNA regions. Examples of proteins having this function are AT-rich interaction domain (ARID)-containing proteins. |
2020-07-05 | Deleted | DEFINITION | Interacting selectively and non-covalently with oligo(A) and oligo(T) tracts of DNA (AT DNA). |
2020-07-05 | Added | DEFINITION | Interacting selectively and non-covalently with the structure formed by the minor groove of adenine-thymine-rich DNA regions. Examples of proteins having this function are AT-rich interaction domain (ARID)-containing proteins. |
2020-07-05 | Updated | TERM | minor groove of adenine-thymine-rich DNA binding |
2020-07-05 | Added | SYNONYM | AT-rich DNA binding |
2020-07-05 | Deleted | RELATION | is a GO:1990837 (sequence-specific double-stranded DNA binding) |
2020-07-05 | Added | SYNONYM | AT DNA binding |
2020-07-05 | Added | RELATION | is a GO:0000217 (DNA secondary structure binding) |
2015-09-27 | Added | RELATION | is a GO:1990837 (sequence-specific double-stranded DNA binding) |
Timestamp | Action | Category | Detail |
---|---|---|---|
2020-07-05 | Updated | TERM | minor groove of adenine-thymine-rich DNA binding |
2003-06-10 | Updated | TERM | AT DNA binding |
2003-03-19 | Updated | TERM | AT DNA binding activity |
2002-02-06 | Updated | TERM | AT DNA binding |
2001-04-03 | Updated | TERM | AT DNA binding |
2001-03-30 | Added | TERM | AT DNA binding |
Timestamp | Action | Category | Detail |
---|---|---|---|
2021-05-24 | Deleted | DEFINITION | Interacting selectively and non-covalently with the structure formed by the minor groove of adenine-thymine-rich DNA regions. Examples of proteins having this function are AT-rich interaction domain (ARID)-containing proteins. |
2021-05-24 | Added | DEFINITION | Binding to a DNA structure formed by the minor groove of adenine-thymine-rich DNA regions. Examples of proteins having this function are AT-rich interaction domain (ARID)-containing proteins. |
2020-07-05 | Deleted | DEFINITION | Interacting selectively and non-covalently with oligo(A) and oligo(T) tracts of DNA (AT DNA). |
2020-07-05 | Added | DEFINITION | Interacting selectively and non-covalently with the structure formed by the minor groove of adenine-thymine-rich DNA regions. Examples of proteins having this function are AT-rich interaction domain (ARID)-containing proteins. |
2020-07-05 | Added | SYNONYM | AT-rich DNA binding |
2020-07-05 | Added | SYNONYM | AT DNA binding |
2009-07-03 | Deleted | DEFINITION | Interacting selectively with oligo(A) and oligo(T) tracts of DNA (AT DNA). |
2009-07-03 | Added | DEFINITION | Interacting selectively and non-covalently with oligo(A) and oligo(T) tracts of DNA (AT DNA). |
2008-05-13 | Added | DEFINITION | Interacting selectively with oligo(A) and oligo(T) tracts of DNA (AT DNA). |
2008-05-12 | Deleted | DEFINITION | Interacting selectively with oligo(A) and oligo(T) tracts of DNA (AT DNA). |
2007-08-09 | Deleted | SYNONYM | AT binding |
2007-08-09 | Added | SYNONYM | AT binding |
2005-08-10 | Added | SYNONYM | AT binding |
2003-05-28 | Added | DEFINITION | Interacting selectively with oligo(A) and oligo(T) tracts of DNA (AT DNA). |
Timestamp | Action | Category | Detail |
---|---|---|---|
2020-07-05 | Deleted | RELATION | is a GO:1990837 (sequence-specific double-stranded DNA binding) |
2020-07-05 | Added | RELATION | is a GO:0000217 (DNA secondary structure binding) |
2015-09-27 | Added | RELATION | is a GO:1990837 (sequence-specific double-stranded DNA binding) |
2015-09-27 | Deleted | RELATION | is a GO:0043565 (sequence-specific DNA binding) |
2008-04-01 | Updated | RELATION | is a GO:0043565 (sequence-specific DNA binding) |
Timestamp | Action | Category | Detail |
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Timestamp | Action | Category | Detail |
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