GO:0005581
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collagen trimer
Cellular Component
Definition (GO:0005581 GONUTS page)
A protein complex consisting of three collagen chains assembled into a left-handed triple helix. These trimers typically assemble into higher order structures. PMID:19693541 PMID:21421911
Ancestor Chart
Child Terms
This table lists all terms that are direct descendants (child terms) of GO:0005581
Child Term | Relationship to GO:0005581 |
---|---|
anchoring collagen complex
|
is_a |
fibrillar collagen trimer
|
is_a |
transmembrane collagen trimer
|
is_a |
short-chain collagen trimer
|
is_a |
FACIT collagen trimer
|
is_a |
network-forming collagen trimer
|
is_a |
collagen type VI trimer
|
is_a |
collagen type XXVIII trimer
|
is_a |
basement membrane collagen trimer
|
is_a |
collagen type XXVI trimer
|
is_a |
Taxon Constraints
The use of this term should conform to the following taxon constraints:
Ancestor GO ID | Ancestor GO Term Name | Relationship | Taxon ID | Taxon | Reference(s) |
---|---|---|---|---|---|
GO:0005581 | collagen trimer | Only in Taxon | 33208 | Metazoa |
More information on taxon constraints in GO is available here
Cross-references
Database | ID | Description |
---|---|---|
InterPro | IPR001442 | Collagen IV, non-collagenous |
InterPro | IPR036954 | Collagen IV, non-collagenous domain superfamily |
UniProtKB-KW | KW-0176 | Collagen |
Wikipedia | Collagen |
Replaces
This term can be used instead of these obsolete terms:
GO Identifier | GO Term Name | Reason |
---|---|---|
GO:0005202 | obsolete collagen | consider GO:0005581 |
GO:0016341 | obsolete other collagen | replaced_by GO:0005581 |
Co-occurring Terms
These tables show the number of times the term listed in the table has been co-annotated.
No co-occurrence statistics for GO:0005581 based on ALL annotations
The top 100 of 1,612 co-occurring terms
Co-occurring Term | PR | S% | #Together | #Compared |
---|---|---|---|---|
collagen trimer
|
2,885.12 | 100.00 | 67,567 | 67,567 |
extracellular matrix structural constituent
|
1,501.91 | 25.63 | 22,673 | 43,554 |
extracellular matrix structural constituent conferring tensile strength
|
1,508.42 | 17.27 | 13,856 | 26,502 |
collagen-containing extracellular matrix
|
362.34 | 9.19 | 17,233 | 137,216 |
extracellular matrix organization
|
319.67 | 7.66 | 13,412 | 121,049 |
basement membrane
|
443.19 | 7.15 | 7,980 | 51,949 |
extracellular matrix
|
122.54 | 3.23 | 7,992 | 188,172 |
extracellular space
|
68.69 | 2.31 | 28,674 | 1,204,410 |
endodermal cell differentiation
|
1,075.34 | 2.30 | 1,615 | 4,333 |
structural constituent of cuticle
|
149.88 | 2.03 | 2,185 | 42,059 |
Totals | 269402 | 7868521 |
No co-occurrence statistics for GO:0005581 based on MANUAL annotations
The top 100 of 228 co-occurring terms
Co-occurring Term | PR | S% | #Together | #Compared |
---|---|---|---|---|
collagen trimer
|
10,502.43 | 100.00 | 123 | 123 |
endothelial cell morphogenesis
|
3,186.13 | 14.59 | 27 | 89 |
notochord development
|
2,299.35 | 14.51 | 37 | 169 |
cardiac muscle atrophy
|
10,502.43 | 13.82 | 17 | 17 |
extracellular matrix structural constituent conferring tensile strength
|
1,314.38 | 12.24 | 104 | 831 |
skeletal muscle atrophy
|
4,152.12 | 11.41 | 17 | 43 |
collagen fibril organization
|
1,252.45 | 11.28 | 83 | 696 |
soft palate development
|
4,278.77 | 7.91 | 11 | 27 |
basement membrane organization
|
1,255.01 | 7.22 | 19 | 159 |
skeletal system development
|
778.95 | 6.85 | 58 | 782 |
Totals | 1281 | 32438 |
Change Log
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Timestamp | Action | Category | Detail |
---|---|---|---|
2018-02-18 | Added | RELATION | is a GO:0032991 (protein-containing complex) |
2018-02-18 | Deleted | RELATION | is a GO:0043234 (protein complex) |
2018-02-01 | Updated | CONSTRAINT | in_taxon NCBITaxon:33208 (Metazoa) |
2015-12-09 | Added | CONSTRAINT | in_taxon NCBITaxon:33208 (Metazoa) |
2015-06-25 | Deleted | RELATION | is a GO:0005575 (cellular_component) |
2015-03-08 | Added | RELATION | has part GO:0098644 (complex of collagen trimers) |
2014-06-05 | Added | RELATION | is a GO:0005575 (cellular_component) |
2014-05-11 | Updated | TERM | collagen trimer |
2014-05-11 | Deleted | RELATION | is a GO:0005575 (cellular_component) |
2014-05-11 | Added | RELATION | is a GO:0043234 (protein complex) |
Timestamp | Action | Category | Detail |
---|---|---|---|
2014-05-11 | Updated | TERM | collagen trimer |
2002-02-06 | Updated | TERM | collagen |
2001-04-03 | Updated | TERM | collagen |
2001-03-30 | Added | TERM | collagen |
Timestamp | Action | Category | Detail |
---|---|---|---|
2014-05-11 | Deleted | SYNONYM | other collagen |
2014-05-11 | Deleted | DEFINITION | Any of the various assemblies in which collagen chains form a left-handed triple helix; may assemble into higher order structures. |
2014-05-11 | Added | DEFINITION | A protein complex consisting of three collagen chains assembled into a left-handed triple helix. These trimers typically assemble into higher order structures. |
2008-05-13 | Added | DEFINITION | Any of the various assemblies in which collagen chains form a left-handed triple helix; may assemble into higher order structures. |
2008-05-12 | Deleted | DEFINITION | Any of the various assemblies in which collagen chains form a left-handed triple helix; may assemble into higher order structures. |
2007-08-09 | Added | SYNONYM | other collagen |
2007-08-09 | Deleted | SYNONYM | other collagen |
2005-08-10 | Added | SYNONYM | other collagen |
2004-04-18 | Updated | DEFINITION | Any of the various assemblies in which collagen chains form a left-handed triple helix; may assemble into higher order structures. |
2002-11-27 | Updated | DEFINITION | A group of fibrous proteins of very high tensile strength that form the main component of connective tissue in animals. Collagen is highly enriched in glycine (some regions are 33% glycine) and proline, occurring predominantly as 3-hydroxyproline (about 20%). |
2001-08-06 | Added | DEFINITION | A group of fibrous proteins of very high tensile strength that form the main component of connective tissue in animals. Collagen is highly enriched in glycine (up to one-third of its amino-acid residues) and somewhat less so in proline plus 3- and 4-hydroxyproline (about 21%). |
Timestamp | Action | Category | Detail |
---|---|---|---|
2018-02-18 | Added | RELATION | is a GO:0032991 (protein-containing complex) |
2018-02-18 | Deleted | RELATION | is a GO:0043234 (protein complex) |
2015-06-25 | Deleted | RELATION | is a GO:0005575 (cellular_component) |
2015-03-08 | Added | RELATION | has part GO:0098644 (complex of collagen trimers) |
2014-06-05 | Added | RELATION | is a GO:0005575 (cellular_component) |
2014-05-11 | Deleted | RELATION | is a GO:0005575 (cellular_component) |
2014-05-11 | Added | RELATION | is a GO:0043234 (protein complex) |
2014-04-10 | Deleted | RELATION | is a GO:0044421 (obsolete extracellular region part) |
2014-04-10 | Added | RELATION | is a GO:0005575 (cellular_component) |
2014-04-10 | Deleted | RELATION | part of GO:0005578 (proteinaceous extracellular matrix) |
2014-04-10 | Deleted | RELATION | is a GO:0044420 (obsolete extracellular matrix component) |
2012-10-29 | Added | RELATION | is a GO:0044421 (obsolete extracellular region part) |
2008-10-21 | Deleted | RELATION | is a GO:0044421 (obsolete extracellular region part) |
2008-04-01 | Updated | RELATION | part of GO:0005578 (proteinaceous extracellular matrix) |
2008-04-01 | Updated | RELATION | is a GO:0044421 (obsolete extracellular region part) |
2008-04-01 | Updated | RELATION | is a GO:0044420 (obsolete extracellular matrix component) |
Timestamp | Action | Category | Detail |
---|---|---|---|
2009-02-05 | Added | XREF | Wikipedia:Collagen |
Timestamp | Action | Category | Detail |
---|---|---|---|
2018-02-01 | Updated | CONSTRAINT | in_taxon NCBITaxon:33208 (Metazoa) |
2015-12-09 | Added | CONSTRAINT | in_taxon NCBITaxon:33208 (Metazoa) |
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