GO:0005581
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collagen trimer
Cellular Component
Definition (GO:0005581 GONUTS page)
A protein complex consisting of three collagen chains assembled into a left-handed triple helix. These trimers typically assemble into higher order structures. PMID:19693541 PMID:21421911
Ancestor Chart
Child Terms
This table lists all terms that are direct descendants (child terms) of GO:0005581
Child Term | Relationship to GO:0005581 |
---|---|
collagen type XXVIII trimer
|
is_a |
network-forming collagen trimer
|
is_a |
basement membrane collagen trimer
|
is_a |
collagen type XXVI trimer
|
is_a |
transmembrane collagen trimer
|
is_a |
short-chain collagen trimer
|
is_a |
fibrillar collagen trimer
|
is_a |
collagen type VI trimer
|
is_a |
FACIT collagen trimer
|
is_a |
anchoring collagen complex
|
is_a |
Taxon Constraints
The use of this term should conform to the following taxon constraints:
Ancestor GO ID | Ancestor GO Term Name | Relationship | Taxon ID | Taxon | Reference(s) |
---|---|---|---|---|---|
GO:0005581 | collagen trimer | Only in Taxon | 33208 | Metazoa |
More information on taxon constraints in GO is available here
Cross-references
Database | ID | Description |
---|---|---|
InterPro | IPR001442 | Collagen IV, non-collagenous |
InterPro | IPR036954 | Collagen IV, non-collagenous domain superfamily |
UniProtKB-KW | KW-0176 | Collagen |
Wikipedia | Collagen |
Replaces
This term can be used instead of these obsolete terms:
GO Identifier | GO Term Name | Reason |
---|---|---|
GO:0005202 | obsolete collagen | consider GO:0005581 |
GO:0016341 | obsolete other collagen | replaced_by GO:0005581 |
Co-occurring Terms
These tables show the number of times the term listed in the table has been co-annotated.
No co-occurrence statistics for GO:0005581 based on ALL annotations
The top 100 of 1,641 co-occurring terms
Co-occurring Term | PR | S% | #Together | #Compared |
---|---|---|---|---|
collagen trimer
|
2,879.28 | 100.00 | 68,821 | 68,821 |
extracellular matrix structural constituent
|
1,506.62 | 25.95 | 23,392 | 44,704 |
extracellular matrix structural constituent conferring tensile strength
|
1,425.04 | 16.46 | 13,612 | 27,503 |
collagen-containing extracellular matrix
|
344.72 | 8.76 | 16,942 | 141,510 |
basement membrane
|
449.86 | 7.36 | 8,403 | 53,783 |
extracellular matrix organization
|
293.58 | 7.02 | 12,680 | 124,358 |
extracellular matrix
|
113.83 | 3.01 | 7,749 | 196,014 |
extracellular space
|
67.37 | 2.27 | 28,950 | 1,237,256 |
endodermal cell differentiation
|
1,055.63 | 2.23 | 1,593 | 4,345 |
structural constituent of cuticle
|
136.63 | 1.94 | 2,181 | 45,962 |
Totals | 273701 | 8461288 |
No co-occurrence statistics for GO:0005581 based on MANUAL annotations
The top 100 of 230 co-occurring terms
Co-occurring Term | PR | S% | #Together | #Compared |
---|---|---|---|---|
collagen trimer
|
11,475.88 | 100.00 | 123 | 123 |
cardiac muscle atrophy
|
11,475.88 | 13.82 | 17 | 17 |
skeletal muscle atrophy
|
4,536.98 | 11.41 | 17 | 43 |
extracellular matrix structural constituent conferring tensile strength
|
1,308.32 | 11.18 | 105 | 921 |
endothelial cell morphogenesis
|
2,700.21 | 10.64 | 20 | 85 |
collagen type IV trimer
|
1,811.98 | 8.22 | 18 | 114 |
soft palate development
|
4,675.36 | 7.91 | 11 | 27 |
basement membrane organization
|
1,434.48 | 7.42 | 19 | 152 |
skeletal system development
|
862.43 | 7.00 | 62 | 825 |
positive regulation of integrin-mediated signaling pathway
|
1,250.58 | 6.49 | 17 | 156 |
Totals | 1103 | 25351 |
Change Log
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Timestamp | Action | Category | Detail |
---|---|---|---|
2018-02-18 | Added | RELATION | is a GO:0032991 (protein-containing complex) |
2018-02-18 | Deleted | RELATION | is a GO:0043234 (protein complex) |
2018-02-01 | Updated | CONSTRAINT | in_taxon NCBITaxon:33208 (Metazoa) |
2015-12-09 | Added | CONSTRAINT | in_taxon NCBITaxon:33208 (Metazoa) |
2015-06-25 | Deleted | RELATION | is a GO:0005575 (cellular_component) |
2015-03-08 | Added | RELATION | has part GO:0098644 (complex of collagen trimers) |
2014-06-05 | Added | RELATION | is a GO:0005575 (cellular_component) |
2014-05-11 | Updated | TERM | collagen trimer |
2014-05-11 | Deleted | RELATION | is a GO:0005575 (cellular_component) |
2014-05-11 | Added | RELATION | is a GO:0043234 (protein complex) |
Timestamp | Action | Category | Detail |
---|---|---|---|
2014-05-11 | Updated | TERM | collagen trimer |
2002-02-06 | Updated | TERM | collagen |
2001-04-03 | Updated | TERM | collagen |
2001-03-30 | Added | TERM | collagen |
Timestamp | Action | Category | Detail |
---|---|---|---|
2014-05-11 | Deleted | SYNONYM | other collagen |
2014-05-11 | Deleted | DEFINITION | Any of the various assemblies in which collagen chains form a left-handed triple helix; may assemble into higher order structures. |
2014-05-11 | Added | DEFINITION | A protein complex consisting of three collagen chains assembled into a left-handed triple helix. These trimers typically assemble into higher order structures. |
2008-05-13 | Added | DEFINITION | Any of the various assemblies in which collagen chains form a left-handed triple helix; may assemble into higher order structures. |
2008-05-12 | Deleted | DEFINITION | Any of the various assemblies in which collagen chains form a left-handed triple helix; may assemble into higher order structures. |
2007-08-09 | Added | SYNONYM | other collagen |
2007-08-09 | Deleted | SYNONYM | other collagen |
2005-08-10 | Added | SYNONYM | other collagen |
2004-04-18 | Updated | DEFINITION | Any of the various assemblies in which collagen chains form a left-handed triple helix; may assemble into higher order structures. |
2002-11-27 | Updated | DEFINITION | A group of fibrous proteins of very high tensile strength that form the main component of connective tissue in animals. Collagen is highly enriched in glycine (some regions are 33% glycine) and proline, occurring predominantly as 3-hydroxyproline (about 20%). |
2001-08-06 | Added | DEFINITION | A group of fibrous proteins of very high tensile strength that form the main component of connective tissue in animals. Collagen is highly enriched in glycine (up to one-third of its amino-acid residues) and somewhat less so in proline plus 3- and 4-hydroxyproline (about 21%). |
Timestamp | Action | Category | Detail |
---|---|---|---|
2018-02-18 | Added | RELATION | is a GO:0032991 (protein-containing complex) |
2018-02-18 | Deleted | RELATION | is a GO:0043234 (protein complex) |
2015-06-25 | Deleted | RELATION | is a GO:0005575 (cellular_component) |
2015-03-08 | Added | RELATION | has part GO:0098644 (complex of collagen trimers) |
2014-06-05 | Added | RELATION | is a GO:0005575 (cellular_component) |
2014-05-11 | Deleted | RELATION | is a GO:0005575 (cellular_component) |
2014-05-11 | Added | RELATION | is a GO:0043234 (protein complex) |
2014-04-10 | Added | RELATION | is a GO:0005575 (cellular_component) |
2014-04-10 | Deleted | RELATION | part of GO:0005578 (proteinaceous extracellular matrix) |
2014-04-10 | Deleted | RELATION | is a GO:0044420 (obsolete extracellular matrix component) |
2014-04-10 | Deleted | RELATION | is a GO:0044421 (obsolete extracellular region part) |
2012-10-29 | Added | RELATION | is a GO:0044421 (obsolete extracellular region part) |
2008-10-21 | Deleted | RELATION | is a GO:0044421 (obsolete extracellular region part) |
2008-04-01 | Updated | RELATION | part of GO:0005578 (proteinaceous extracellular matrix) |
2008-04-01 | Updated | RELATION | is a GO:0044421 (obsolete extracellular region part) |
2008-04-01 | Updated | RELATION | is a GO:0044420 (obsolete extracellular matrix component) |
Timestamp | Action | Category | Detail |
---|---|---|---|
2009-02-05 | Added | XREF | Wikipedia:Collagen |
Timestamp | Action | Category | Detail |
---|---|---|---|
2018-02-01 | Updated | CONSTRAINT | in_taxon NCBITaxon:33208 (Metazoa) |
2015-12-09 | Added | CONSTRAINT | in_taxon NCBITaxon:33208 (Metazoa) |
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