GO:0005590
JSON
collagen type VII trimer
Cellular Component
Definition (GO:0005590 GONUTS page)
A collagen homotrimer of alpha1(VII) chains; type VII collagen triple helices form antiparallel dimer, which in turn associate laterally to form anchoring fibrils that connect type IV collagen in the basal lamina to plaques in the underlying connective tissue. It binds laminin. PMID:19693541
Ancestor Chart
Taxon Constraints
The use of this term should conform to the following taxon constraints:
Ancestor GO ID | Ancestor GO Term Name | Relationship | Taxon ID | Taxon | Reference(s) |
---|---|---|---|---|---|
GO:0005590 | collagen type VII trimer | Only in Taxon | 33208 | Metazoa |
More information on taxon constraints in GO is available here
Annotation Blacklist
This list aims to correct incorrect annotations to UniProtKB accessions inferred from electronic annotation (IEA) methods that are supplied by the UniProt-GOA project to the GO Consortium:
Category | Entity Type | Entity ID | Taxon ID | Entity Name | Ancestor GO ID | Reason | Rule/Method ID |
---|---|---|---|---|---|---|---|
NOT-qualified manual | protein | P00750 | 9606 | TPA_HUMAN | GO:0062023 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000314 from this reference: PMID:1632457 | |
NOT-qualified manual | protein | P19637 | 10116 | TPA_RAT | GO:0062023 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 |
Co-occurring Terms
These tables show the number of times the term listed in the table has been co-annotated.
No co-occurrence statistics for GO:0005590 based on ALL annotations
The top 16 of 16 co-occurring terms
Co-occurring Term | PR | S% | #Together | #Compared |
---|---|---|---|---|
collagen type VII trimer
|
194,938,780.00 | 100.00 | 1 | 1 |
endodermal cell differentiation
|
44,989.34 | 0.02 | 1 | 4,333 |
epidermis development
|
24,039.81 | 0.01 | 1 | 8,109 |
endoplasmic reticulum-Golgi intermediate compartment membrane
|
8,879.02 | 0.00 | 1 | 21,955 |
extracellular matrix structural constituent conferring tensile strength
|
7,355.63 | 0.00 | 1 | 26,502 |
COPII-coated ER to Golgi transport vesicle
|
4,742.23 | 0.00 | 1 | 41,107 |
protein binding
|
4,661.71 | 0.00 | 1 | 41,817 |
basement membrane
|
3,752.50 | 0.00 | 1 | 51,949 |
collagen trimer
|
2,885.12 | 0.00 | 1 | 67,567 |
endoplasmic reticulum lumen
|
2,754.38 | 0.00 | 1 | 70,774 |
Totals | 16 | 5101370 |
No co-occurrence statistics for GO:0005590 based on MANUAL annotations
The top 13 of 13 co-occurring terms
Co-occurring Term | PR | S% | #Together | #Compared |
---|---|---|---|---|
collagen type VII trimer
|
1,291,799.00 | 100.00 | 1 | 1 |
endoplasmic reticulum-Golgi intermediate compartment membrane
|
11,637.83 | 0.90 | 1 | 111 |
endodermal cell differentiation
|
7,925.15 | 0.61 | 1 | 163 |
epidermis development
|
2,820.52 | 0.22 | 1 | 458 |
extracellular matrix structural constituent conferring tensile strength
|
1,554.51 | 0.12 | 1 | 831 |
basement membrane
|
1,327.65 | 0.10 | 1 | 973 |
endoplasmic reticulum lumen
|
1,091.97 | 0.08 | 1 | 1,183 |
COPII-coated ER to Golgi transport vesicle
|
676.69 | 0.05 | 1 | 1,909 |
extracellular matrix organization
|
448.85 | 0.03 | 1 | 2,878 |
collagen-containing extracellular matrix
|
388.28 | 0.03 | 1 | 3,327 |
Totals | 13 | 94161 |
Change Log
- All changes
- All changes
- Term
- Term
- Definition / Synonyms
- Definition / Synonyms
- Relationships
- Relationships
- Cross-references
- Cross-references
- Other
- Other
Timestamp | Action | Category | Detail |
---|---|---|---|
2024-09-05 | Added | CONSTRAINT | in_taxon NCBITaxon:33208 (Metazoa) |
2017-11-08 | Deleted | RELATION | part of GO:0098648 (collagen anchoring fibril) |
2017-05-22 | Added | RELATION | part of GO:0098648 (collagen anchoring fibril) |
2017-04-06 | Deleted | RELATION | part of GO:0098648 (collagen anchoring fibril) |
2015-11-21 | Deleted | RELATION | is a GO:0005583 (fibrillar collagen trimer) |
2015-06-18 | Added | RELATION | capable of GO:0043236 (laminin binding) |
2014-05-25 | Added | RELATION | part of GO:0098652 (collagen type VII anchoring fibril) |
2014-05-25 | Added | DEFINITION | A collagen homotrimer of alpha1(VII) chains; type VII collagen triple helices form antiparallel dimer, which in turn associate laterally to form anchoring fibrils that connect type IV collagen in the basal lamina to plaques in the underlying connective tissue. It binds laminin. |
2014-05-25 | Deleted | DEFINITION | A collagen homotrimer of alpha1(VII) chains; type VII collagen triple helices form antiparallel dimer, which in turn associate laterally to form anchoring fibrils that connect type IV collagen in the basal lamina to plaques in the underlying connective tissue. It binds laminin. |
2014-05-11 | Updated | TERM | collagen type VII trimer |
Timestamp | Action | Category | Detail |
---|---|---|---|
2014-05-11 | Updated | TERM | collagen type VII trimer |
2002-02-06 | Updated | TERM | collagen type VII |
2001-04-03 | Updated | TERM | collagen type VII |
2001-03-30 | Added | TERM | collagen type VII |
Timestamp | Action | Category | Detail |
---|---|---|---|
2014-05-25 | Added | DEFINITION | A collagen homotrimer of alpha1(VII) chains; type VII collagen triple helices form antiparallel dimer, which in turn associate laterally to form anchoring fibrils that connect type IV collagen in the basal lamina to plaques in the underlying connective tissue. It binds laminin. |
2014-05-25 | Deleted | DEFINITION | A collagen homotrimer of alpha1(VII) chains; type VII collagen triple helices form antiparallel dimer, which in turn associate laterally to form anchoring fibrils that connect type IV collagen in the basal lamina to plaques in the underlying connective tissue. It binds laminin. |
2014-05-11 | Deleted | DEFINITION | A collagen homotrimer of alpha1(VII) chains; type VII collagen triple helices form antiparallel dimer, which in turn associate laterally to form anchoring fibrils that connect type IV collagen in the basal lamina to plaques in the underlying connective tissue. |
2014-05-11 | Added | DEFINITION | A collagen homotrimer of alpha1(VII) chains; type VII collagen triple helices form antiparallel dimer, which in turn associate laterally to form anchoring fibrils that connect type IV collagen in the basal lamina to plaques in the underlying connective tissue. It binds laminin. |
2008-05-13 | Added | DEFINITION | A collagen homotrimer of alpha1(VII) chains; type VII collagen triple helices form antiparallel dimer, which in turn associate laterally to form anchoring fibrils that connect type IV collagen in the basal lamina to plaques in the underlying connective tissue. |
2008-05-12 | Deleted | DEFINITION | A collagen homotrimer of alpha1(VII) chains; type VII collagen triple helices form antiparallel dimer, which in turn associate laterally to form anchoring fibrils that connect type IV collagen in the basal lamina to plaques in the underlying connective tissue. |
2004-04-18 | Added | DEFINITION | A collagen homotrimer of alpha1(VII) chains; type VII collagen triple helices form antiparallel dimer, which in turn associate laterally to form anchoring fibrils that connect type IV collagen in the basal lamina to plaques in the underlying connective tissue. |
Timestamp | Action | Category | Detail |
---|---|---|---|
2017-11-08 | Deleted | RELATION | part of GO:0098648 (collagen anchoring fibril) |
2017-05-22 | Added | RELATION | part of GO:0098648 (collagen anchoring fibril) |
2017-04-06 | Deleted | RELATION | part of GO:0098648 (collagen anchoring fibril) |
2015-11-21 | Deleted | RELATION | is a GO:0005583 (fibrillar collagen trimer) |
2015-06-18 | Added | RELATION | capable of GO:0043236 (laminin binding) |
2014-05-25 | Added | RELATION | part of GO:0098652 (collagen type VII anchoring fibril) |
2014-05-11 | Added | RELATION | part of GO:0098648 (collagen anchoring fibril) |
2014-05-11 | Added | RELATION | is a GO:0005583 (fibrillar collagen trimer) |
2008-04-01 | Updated | RELATION | is a GO:0030934 (anchoring collagen complex) |
Timestamp | Action | Category | Detail |
---|
Timestamp | Action | Category | Detail |
---|---|---|---|
2024-09-05 | Added | CONSTRAINT | in_taxon NCBITaxon:33208 (Metazoa) |
Not found :(
Sorry, but the Term you were trying to view does not exist.
Reported error:
It looks like this may have been caused by:
- a mistyped URL
- an out-of-date link