This term is obsolete.

GO:0005590 JSON

collagen type VII trimer

Cellular Component

Definition (GO:0005590 GONUTS page)

A collagen homotrimer of alpha1(VII) chains; type VII collagen triple helices form antiparallel dimer, which in turn associate laterally to form anchoring fibrils that connect type IV collagen in the basal lamina to plaques in the underlying connective tissue. It binds laminin. PMID:19693541

1 annotations

Ancestor Chart

Ancestor chart for GO:0005590
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Ancestor chart

Taxon Constraints

The use of this term should conform to the following taxon constraints:

Ancestor GO ID Ancestor GO Term Name Relationship Taxon ID Taxon Reference(s)
GO:0005590 collagen type VII trimer Only in Taxon 33208 Metazoa

More information on taxon constraints in GO is available here

Annotation Blacklist

This list aims to correct incorrect annotations to UniProtKB accessions inferred from electronic annotation (IEA) methods that are supplied by the UniProt-GOA project to the GO Consortium:

Category Entity Type Entity ID Taxon ID Entity Name Ancestor GO ID Reason Rule/Method ID
NOT-qualified manual protein P00750 9606 TPA_HUMAN GO:0062023 1 NOT-qualified manual annotation exists with evidence code ECO:0000314 from this reference: PMID:1632457
NOT-qualified manual protein P19637 10116 TPA_RAT GO:0062023 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096

Co-occurring Terms

These tables show the number of times the term listed in the table has been co-annotated.

No co-occurrence statistics for GO:0005590 based on ALL annotations
The top 16 of 16 co-occurring terms
Co-occurring Term PR S% #Together #Compared
collagen type VII trimer
194,938,780.00 100.00 1 1
endodermal cell differentiation
44,989.34 0.02 1 4,333
epidermis development
24,039.81 0.01 1 8,109
endoplasmic reticulum-Golgi intermediate compartment membrane
8,879.02 0.00 1 21,955
extracellular matrix structural constituent conferring tensile strength
7,355.63 0.00 1 26,502
COPII-coated ER to Golgi transport vesicle
4,742.23 0.00 1 41,107
protein binding
4,661.71 0.00 1 41,817
basement membrane
3,752.50 0.00 1 51,949
collagen trimer
2,885.12 0.00 1 67,567
endoplasmic reticulum lumen
2,754.38 0.00 1 70,774
Totals 16 5101370
No co-occurrence statistics for GO:0005590 based on MANUAL annotations
The top 13 of 13 co-occurring terms
Co-occurring Term PR S% #Together #Compared
collagen type VII trimer
1,291,799.00 100.00 1 1
endoplasmic reticulum-Golgi intermediate compartment membrane
11,637.83 0.90 1 111
endodermal cell differentiation
7,925.15 0.61 1 163
epidermis development
2,820.52 0.22 1 458
extracellular matrix structural constituent conferring tensile strength
1,554.51 0.12 1 831
basement membrane
1,327.65 0.10 1 973
endoplasmic reticulum lumen
1,091.97 0.08 1 1,183
COPII-coated ER to Golgi transport vesicle
676.69 0.05 1 1,909
extracellular matrix organization
448.85 0.03 1 2,878
collagen-containing extracellular matrix
388.28 0.03 1 3,327
Totals 13 94161

Change Log

Timestamp Action Category Detail
2024-09-05 Added CONSTRAINT in_taxon NCBITaxon:33208 (Metazoa)
2017-11-08 Deleted RELATION part of GO:0098648 (collagen anchoring fibril)
2017-05-22 Added RELATION part of GO:0098648 (collagen anchoring fibril)
2017-04-06 Deleted RELATION part of GO:0098648 (collagen anchoring fibril)
2015-11-21 Deleted RELATION is a GO:0005583 (fibrillar collagen trimer)
2015-06-18 Added RELATION capable of GO:0043236 (laminin binding)
2014-05-25 Added RELATION part of GO:0098652 (collagen type VII anchoring fibril)
2014-05-25 Added DEFINITION A collagen homotrimer of alpha1(VII) chains; type VII collagen triple helices form antiparallel dimer, which in turn associate laterally to form anchoring fibrils that connect type IV collagen in the basal lamina to plaques in the underlying connective tissue. It binds laminin.
2014-05-25 Deleted DEFINITION A collagen homotrimer of alpha1(VII) chains; type VII collagen triple helices form antiparallel dimer, which in turn associate laterally to form anchoring fibrils that connect type IV collagen in the basal lamina to plaques in the underlying connective tissue. It binds laminin.
2014-05-11 Updated TERM collagen type VII trimer
Timestamp Action Category Detail
2014-05-11 Updated TERM collagen type VII trimer
2002-02-06 Updated TERM collagen type VII
2001-04-03 Updated TERM collagen type VII
2001-03-30 Added TERM collagen type VII
Timestamp Action Category Detail
2014-05-25 Added DEFINITION A collagen homotrimer of alpha1(VII) chains; type VII collagen triple helices form antiparallel dimer, which in turn associate laterally to form anchoring fibrils that connect type IV collagen in the basal lamina to plaques in the underlying connective tissue. It binds laminin.
2014-05-25 Deleted DEFINITION A collagen homotrimer of alpha1(VII) chains; type VII collagen triple helices form antiparallel dimer, which in turn associate laterally to form anchoring fibrils that connect type IV collagen in the basal lamina to plaques in the underlying connective tissue. It binds laminin.
2014-05-11 Deleted DEFINITION A collagen homotrimer of alpha1(VII) chains; type VII collagen triple helices form antiparallel dimer, which in turn associate laterally to form anchoring fibrils that connect type IV collagen in the basal lamina to plaques in the underlying connective tissue.
2014-05-11 Added DEFINITION A collagen homotrimer of alpha1(VII) chains; type VII collagen triple helices form antiparallel dimer, which in turn associate laterally to form anchoring fibrils that connect type IV collagen in the basal lamina to plaques in the underlying connective tissue. It binds laminin.
2008-05-13 Added DEFINITION A collagen homotrimer of alpha1(VII) chains; type VII collagen triple helices form antiparallel dimer, which in turn associate laterally to form anchoring fibrils that connect type IV collagen in the basal lamina to plaques in the underlying connective tissue.
2008-05-12 Deleted DEFINITION A collagen homotrimer of alpha1(VII) chains; type VII collagen triple helices form antiparallel dimer, which in turn associate laterally to form anchoring fibrils that connect type IV collagen in the basal lamina to plaques in the underlying connective tissue.
2004-04-18 Added DEFINITION A collagen homotrimer of alpha1(VII) chains; type VII collagen triple helices form antiparallel dimer, which in turn associate laterally to form anchoring fibrils that connect type IV collagen in the basal lamina to plaques in the underlying connective tissue.
Timestamp Action Category Detail
2017-11-08 Deleted RELATION part of GO:0098648 (collagen anchoring fibril)
2017-05-22 Added RELATION part of GO:0098648 (collagen anchoring fibril)
2017-04-06 Deleted RELATION part of GO:0098648 (collagen anchoring fibril)
2015-11-21 Deleted RELATION is a GO:0005583 (fibrillar collagen trimer)
2015-06-18 Added RELATION capable of GO:0043236 (laminin binding)
2014-05-25 Added RELATION part of GO:0098652 (collagen type VII anchoring fibril)
2014-05-11 Added RELATION part of GO:0098648 (collagen anchoring fibril)
2014-05-11 Added RELATION is a GO:0005583 (fibrillar collagen trimer)
2008-04-01 Updated RELATION is a GO:0030934 (anchoring collagen complex)
Timestamp Action Category Detail
Timestamp Action Category Detail
2024-09-05 Added CONSTRAINT in_taxon NCBITaxon:33208 (Metazoa)
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