GO:0005673
JSON
transcription factor TFIIE complex
Cellular Component
Definition (GO:0005673 GONUTS page)
A transcription factor which in humans consists of a complex of two alpha and two beta chains. Recruits TFIIH to the initiation complex and helps activate both RNA polymerase II and TFIIH. PMID:16547462
Ancestor Chart
Taxon Constraints
The use of this term should conform to the following taxon constraints:
Ancestor GO ID | Ancestor GO Term Name | Relationship | Taxon ID | Taxon | Reference(s) |
---|---|---|---|---|---|
GO:0005673 | transcription factor TFIIE complex | Only in Taxon | 2759 | Eukaryota |
More information on taxon constraints in GO is available here
Annotation Blacklist
This list aims to correct incorrect annotations to UniProtKB accessions inferred from electronic annotation (IEA) methods that are supplied by the UniProt-GOA project to the GO Consortium:
Category | Entity Type | Entity ID | Taxon ID | Entity Name | Ancestor GO ID | Reason | Rule/Method ID |
---|---|---|---|---|---|---|---|
NOT-qualified manual | protein | A0A096MJ18 | 10116 | A0A096MJ18_RAT | GO:0005634 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | A0A096MK97 | 10116 | A0A096MK97_RAT | GO:0005634 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | A0A0G2JW23 | 10116 | A0A0G2JW23_RAT | GO:0005634 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | A0A0G2K8T1 | 10116 | A0A0G2K8T1_RAT | GO:0005634 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | A0A1B0GR71 | 10090 | A0A1B0GR71_MOUSE | GO:0005634 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000314 from this reference: PMID:16904636 | |
NOT-qualified manual | protein | A0A1B0GRK6 | 10090 | A0A1B0GRK6_MOUSE | GO:0005634 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000314 from this reference: PMID:16904636 | |
NOT-qualified manual | protein | A0A1D8PHF8 | 237561 | A0A1D8PHF8_CANAL | GO:0005634 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000314 from this reference: PMID:8760936 | |
NOT-qualified manual | protein | A0A1W2Q633 | 10116 | A0A1W2Q633_RAT | GO:0005634 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | A0A8I5Y8H4 | 10116 | A0A8I5Y8H4_RAT | GO:0005634 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | A0A8I6A0E5 | 10116 | A0A8I6A0E5_RAT | GO:0005634 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 |
Cross-references
Database | ID | Description |
---|---|---|
InterPro | IPR016656 | Transcription initiation factor TFIIE, beta subunit |
Co-occurring Terms
These tables show the number of times the term listed in the table has been co-annotated.
No co-occurrence statistics for GO:0005673 based on ALL annotations
The top 100 of 107 co-occurring terms
Co-occurring Term | PR | S% | #Together | #Compared |
---|---|---|---|---|
transcription factor TFIIE complex
|
19,609.59 | 100.00 | 10,105 | 10,105 |
TFIIH-class transcription factor complex binding
|
18,839.84 | 48.43 | 4,993 | 5,197 |
transcription initiation at RNA polymerase II promoter
|
2,037.37 | 10.39 | 10,105 | 97,260 |
RNA polymerase II general transcription initiation factor activity
|
96.69 | 0.43 | 324 | 65,708 |
transcription open complex formation at RNA polymerase II promoter
|
1,644.95 | 0.36 | 38 | 453 |
transcription factor TFIID complex
|
54.64 | 0.24 | 182 | 65,322 |
transcription preinitiation complex
|
50.63 | 0.19 | 76 | 29,434 |
mRNA transcription by RNA polymerase II
|
142.26 | 0.19 | 26 | 3,584 |
translation initiation factor activity
|
35.85 | 0.18 | 816 | 446,359 |
RNA polymerase II complex binding
|
39.83 | 0.17 | 89 | 43,817 |
Totals | 36128 | 210282607 |
No co-occurrence statistics for GO:0005673 based on MANUAL annotations
The top 21 of 21 co-occurring terms
Co-occurring Term | PR | S% | #Together | #Compared |
---|---|---|---|---|
transcription factor TFIIE complex
|
5,346.72 | 100.00 | 264 | 264 |
TFIIH-class transcription factor complex binding
|
4,832.61 | 50.54 | 141 | 156 |
transcription initiation at RNA polymerase II promoter
|
730.23 | 13.66 | 264 | 1,933 |
mRNA transcription by RNA polymerase II
|
54.19 | 0.54 | 3 | 296 |
transcription open complex formation at RNA polymerase II promoter
|
281.41 | 0.35 | 1 | 19 |
RNA polymerase II general transcription initiation factor activity
|
18.88 | 0.32 | 8 | 2,266 |
transcription factor TFIID complex
|
17.84 | 0.29 | 6 | 1,798 |
transcription by RNA polymerase II
|
16.60 | 0.28 | 8 | 2,577 |
RNA polymerase II complex binding
|
15.48 | 0.24 | 4 | 1,382 |
transcription preinitiation complex
|
15.87 | 0.21 | 2 | 674 |
Totals | 735 | 613079 |
Change Log
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Timestamp | Action | Category | Detail |
---|---|---|---|
2024-09-05 | Added | CONSTRAINT | in_taxon NCBITaxon:2759 (Eukaryota) |
2019-09-12 | Deleted | RELATION | is a GO:0044451 (obsolete nucleoplasm part) |
2014-05-11 | Added | RELATION | is a GO:0090575 (RNA polymerase II transcription regulator complex) |
2014-05-11 | Deleted | RELATION | is a GO:0044798 (nuclear transcription factor complex) |
2013-09-05 | Added | RELATION | is a GO:0044451 (obsolete nucleoplasm part) |
2013-08-31 | Added | RELATION | is a GO:0044798 (nuclear transcription factor complex) |
2013-08-31 | Deleted | RELATION | is a GO:0005667 (transcription regulator complex) |
2008-05-13 | Added | DEFINITION | A transcription factor which in humans consists of a complex of two alpha and two beta chains. Recruits TFIIH to the initiation complex and helps activate both RNA polymerase II and TFIIH. |
2008-05-12 | Deleted | DEFINITION | A transcription factor which in humans consists of a complex of two alpha and two beta chains. Recruits TFIIH to the initiation complex and helps activate both RNA polymerase II and TFIIH. |
2008-04-01 | Updated | RELATION | is a GO:0005667 (transcription regulator complex) |
Timestamp | Action | Category | Detail |
---|---|---|---|
2002-12-14 | Updated | TERM | transcription factor TFIIE complex |
2002-02-06 | Updated | TERM | transcription factor TFIIE |
2001-04-03 | Updated | TERM | transcription factor TFIIE |
2001-03-30 | Added | TERM | transcription factor TFIIE |
Timestamp | Action | Category | Detail |
---|---|---|---|
2008-05-13 | Added | DEFINITION | A transcription factor which in humans consists of a complex of two alpha and two beta chains. Recruits TFIIH to the initiation complex and helps activate both RNA polymerase II and TFIIH. |
2008-05-12 | Deleted | DEFINITION | A transcription factor which in humans consists of a complex of two alpha and two beta chains. Recruits TFIIH to the initiation complex and helps activate both RNA polymerase II and TFIIH. |
2005-03-25 | Updated | DEFINITION | A transcription factor which in humans consists of a complex of two alpha and two beta chains. Recruits TFIIH to the initiation complex and helps activate both RNA polymerase II and TFIIH. |
2003-03-26 | Added | DEFINITION | A transcription factor which in humans consists of a complex of two alpha and two beta chains. Recruits TFIIH to the initiation complex and helps activate both RNA Pol II and TFIIH. |
Timestamp | Action | Category | Detail |
---|---|---|---|
2019-09-12 | Deleted | RELATION | is a GO:0044451 (obsolete nucleoplasm part) |
2014-05-11 | Added | RELATION | is a GO:0090575 (RNA polymerase II transcription regulator complex) |
2014-05-11 | Deleted | RELATION | is a GO:0044798 (nuclear transcription factor complex) |
2013-09-05 | Added | RELATION | is a GO:0044451 (obsolete nucleoplasm part) |
2013-08-31 | Added | RELATION | is a GO:0044798 (nuclear transcription factor complex) |
2013-08-31 | Deleted | RELATION | is a GO:0005667 (transcription regulator complex) |
2008-04-01 | Updated | RELATION | is a GO:0005667 (transcription regulator complex) |
2008-04-01 | Updated | RELATION | part of GO:0016591 (RNA polymerase II, holoenzyme) |
Timestamp | Action | Category | Detail |
---|
Timestamp | Action | Category | Detail |
---|---|---|---|
2024-09-05 | Added | CONSTRAINT | in_taxon NCBITaxon:2759 (Eukaryota) |
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